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Coutinho ID, Facchinatto WM, Mertz-Henning LM, Viana AC, Marin SR, Santagneli SH, Nepomuceno AL, Colnago LA. NMR Fingerprinting of Conventional and Genetically Modified Soybean Plants with AtAREB1 Transcription Factors. ACS OMEGA 2024; 9:32651-32661. [PMID: 39100338 PMCID: PMC11292650 DOI: 10.1021/acsomega.4c01796] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/24/2024] [Revised: 06/09/2024] [Accepted: 06/12/2024] [Indexed: 08/06/2024]
Abstract
Drought stress impacts soybean yields and physiological processes. However, the insertion of the activated form of the AtAREB1 gene in the soybean cultivar BR16, which is sensitive to water deficit, improved the drought response of the genetically modified plants. Thus, in this study, we used 1H NMR in solution and solid-state NMR to investigate the response of genetically modified soybean overexpressing AtAREB1 under water deficiency conditions. We achieved that drought-tolerant soybean yields high content of amino acids isoleucine, leucine, threonine, valine, proline, glutamate, aspartate, asparagine, tyrosine, and phenylalanine after 12 days of drought stress conditions, as compared to drought-sensitive soybean under the same conditions. Specific target compounds, including sugars, organic acids, and phenolic compounds, were identified as involved in controlling sensitive soybean during the vegetative stage. Solid-state NMR was used to study the impact of drought stress on starch and cellulose contents in different soybean genotypes. The findings provide insights into the metabolic adjustments of soybean overexpressing AREB transcription factors in adapting to dry climates. This study presents NMR techniques for investigating the metabolome of transgenic soybean plants in response to the water deficit. The approach allowed for the identification of physiological and morphological changes in drought-resistant and drought-tolerant soybean tissues. The findings indicate that drought stress significantly alters micro- and macromolecular metabolism in soybean plants. Differential responses were observed among roots and leaves as well as drought-tolerant and drought-sensitive cultivars, highlighting the complex interplay between overexpressed transcription factors and drought stress in soybean plants.
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Affiliation(s)
- Isabel Duarte Coutinho
- Embrapa
Instrumentation, Brazilian Agricultural
Research Corporation, St. XV de Novembro 1452, P.O. Box 741, 13560-970 São Carlos, São Paulo, Brazil
| | - William Marcondes Facchinatto
- Embrapa
Instrumentation, Brazilian Agricultural
Research Corporation, St. XV de Novembro 1452, P.O. Box 741, 13560-970 São Carlos, São Paulo, Brazil
| | - Liliane Marcia Mertz-Henning
- Embrapa
Soybean, Brazilian Agricultural Research
Corporation, HWY Carlos João Strass, Warta District, P.O.
Box 4006, 86085-981 Londrina, Paraná, Brazil
| | - Américo
José Carvalho Viana
- Embrapa
Soybean, Brazilian Agricultural Research
Corporation, HWY Carlos João Strass, Warta District, P.O.
Box 4006, 86085-981 Londrina, Paraná, Brazil
| | - Silvana Regina
Rockenbach Marin
- Embrapa
Soybean, Brazilian Agricultural Research
Corporation, HWY Carlos João Strass, Warta District, P.O.
Box 4006, 86085-981 Londrina, Paraná, Brazil
| | - Silvia Helena Santagneli
- Institute
of Chemistry, São Paulo State University
(UNESP), Avenue Francisco Degni 55, CEP 14800-060 Araraquara, São Paulo, Brazil
| | - Alexandre Lima Nepomuceno
- Embrapa
Soybean, Brazilian Agricultural Research
Corporation, HWY Carlos João Strass, Warta District, P.O.
Box 4006, 86085-981 Londrina, Paraná, Brazil
| | - Luiz Alberto Colnago
- Embrapa
Instrumentation, Brazilian Agricultural
Research Corporation, St. XV de Novembro 1452, P.O. Box 741, 13560-970 São Carlos, São Paulo, Brazil
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Ismail M, Hassan MHA, Mohamed EIA, Azmy AF, Moawad A, Mohammed R, Zaki MA. New insights into the anti-inflammatory and anti-melanoma mechanisms of action of azelaic acid and other Fusarium solani metabolites via in vitro and in silico studies. Sci Rep 2024; 14:14370. [PMID: 38909081 PMCID: PMC11193793 DOI: 10.1038/s41598-024-63958-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2023] [Accepted: 06/04/2024] [Indexed: 06/24/2024] Open
Abstract
Metabolites exploration of the ethyl acetate extract of Fusarium solani culture broth that was isolated from Euphorbia tirucalli root afforded five compounds; 4-hydroxybenzaldehyde (1), 4-hydroxybenzoic acid (2), tyrosol (3), azelaic acid (4), malic acid (5), and fusaric acid (6). Fungal extract as well as its metabolites were evaluated for their anti-inflammatory and anti-hyperpigmentation potential via in vitro cyclooxygenases and tyrosinase inhibition assays, respectively. Azelaic acid (4) exhibited powerful and selective COX-2 inhibition followed by fusaric acid (6) with IC50 values (2.21 ± 0.06 and 4.81 ± 0.14 μM, respectively). As well, azelaic acid (4) had the most impressive tyrosinase inhibitory effect with IC50 value of 8.75 ± 0.18 μM compared to kojic acid (IC50 = 9.27 ± 0.19 μM). Exclusive computational studies of azelaic acid and fusaric acid with COX-2 were in good accord with the in vitro results. Interestingly, this is the first time to investigate and report the potential of compounds 3-6 to inhibit cyclooxygenase enzymes. One of the most invasive forms of skin cancer is melanoma, a molecular docking study using a set of enzymes related to melanoma suggested pirin to be therapeutic target for azelaic acid and fusaric acid as a plausible mechanism for their anti-melanoma activity.
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Affiliation(s)
- Mona Ismail
- Department of Pharmacognosy, Faculty of Pharmacy, Beni-Suef University, Beni-Suef, 62514, Egypt
| | - Marwa H A Hassan
- Department of Pharmacognosy, Faculty of Pharmacy, Beni-Suef University, Beni-Suef, 62514, Egypt
| | - Enas I A Mohamed
- Department of Pharmacognosy, Faculty of Pharmacy, Beni-Suef University, Beni-Suef, 62514, Egypt
| | - Ahmed F Azmy
- Department of Microbiology and Immunology, Faculty of Pharmacy, Beni-Suef University, Beni-Suef, 62514, Egypt
| | - Abeer Moawad
- Department of Pharmacognosy, Faculty of Pharmacy, Beni-Suef University, Beni-Suef, 62514, Egypt.
| | - Rabab Mohammed
- Department of Pharmacognosy, Faculty of Pharmacy, Beni-Suef University, Beni-Suef, 62514, Egypt.
| | - Mohamed A Zaki
- Department of Pharmacognosy, Faculty of Pharmacy, Beni-Suef University, Beni-Suef, 62514, Egypt
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3
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Quintela A, Santos MFC, de Lima RF, Mayer JLS, Marcheafave GG, Arruda MAZ, Tormena CF. Influence of Silver Nanoparticles on the Metabolites of Two Transgenic Soybean Varieties: An NMR-Based Metabolomics Approach. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2024; 72:12281-12294. [PMID: 38747520 PMCID: PMC11140748 DOI: 10.1021/acs.jafc.4c00756] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2024] [Revised: 05/02/2024] [Accepted: 05/06/2024] [Indexed: 05/30/2024]
Abstract
This study investigated the effect of AgNPs and AgNO3, at concentrations equivalent, on the production of primary and secondary metabolites on transgenic soybean plants through an NMR-based metabolomics. The plants were cultivated in a germination chamber following three different treatments: T0 (addition of water), T1 (addition of AgNPs), and T2 (addition of AgNO3). Physiological characteristics, anatomical analyses through microscopic structures, and metabolic profile studies were carried out to establish the effect of abiotic stress on these parameters in soybean plants. Analysis of the 1H NMR spectra revealed the presence of amino acids, organic acids, sugars, and polyphenols. The metabolic profiles of plants with AgNP and AgNO3 were qualitatively similar to the metabolic profile of the control group, suggesting that the application of silver does not affect secondary metabolites. From the PCA, it was possible to differentiate the three treatments applied, mainly based on the content of fatty acids, pinitol, choline, and betaine.
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Affiliation(s)
- Amanda
L. Quintela
- Physical
Organic Chemistry Laboratory, Institute of Chemistry, Universidade Estadual de Campinas, UNICAMP, PO Box 6154, Campinas 13083-970, São Paulo, Brazil
- Spectrometry,
Sample Preparation and Mechanization Group, Institute of Chemistry, Universidade Estadual de Campinas, UNICAMP, PO Box 6154, Campinas 13083-970, São Paulo, Brazil
| | - Maria F. C. Santos
- Physical
Organic Chemistry Laboratory, Institute of Chemistry, Universidade Estadual de Campinas, UNICAMP, PO Box 6154, Campinas 13083-970, São Paulo, Brazil
| | - Rodrigo F. de Lima
- Laboratory
of Plant Anatomy, Institute of Biology, Universidade Estadual de Campinas, UNICAMP, PO Box 6109, Campinas 13083-862, São Paulo, Brazil
| | - Juliana L. S. Mayer
- Laboratory
of Plant Anatomy, Institute of Biology, Universidade Estadual de Campinas, UNICAMP, PO Box 6109, Campinas 13083-862, São Paulo, Brazil
| | - Gustavo G. Marcheafave
- Institute
of Chemistry, Universidade Estadual de Campinas,
UNICAMP, PO Box 6154, Campinas 13083-970, São Paulo, Brazil
| | - Marco A. Z. Arruda
- Spectrometry,
Sample Preparation and Mechanization Group, Institute of Chemistry, Universidade Estadual de Campinas, UNICAMP, PO Box 6154, Campinas 13083-970, São Paulo, Brazil
| | - Cláudio F. Tormena
- Physical
Organic Chemistry Laboratory, Institute of Chemistry, Universidade Estadual de Campinas, UNICAMP, PO Box 6154, Campinas 13083-970, São Paulo, Brazil
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4
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Identification of Functional Genetic Variations Underlying Flooding Tolerance in Brazilian Soybean Genotypes. Int J Mol Sci 2022; 23:ijms231810611. [PMID: 36142529 PMCID: PMC9502317 DOI: 10.3390/ijms231810611] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2022] [Revised: 08/23/2022] [Accepted: 09/05/2022] [Indexed: 11/21/2022] Open
Abstract
Flooding is a frequent environmental stress that reduces soybean (Glycine max) growth and grain yield in many producing areas in the world, such as, e.g., in the United States, Southeast Asia and Southern Brazil. In these regions, soybean is frequently cultivated in lowland areas by rotating with rice (Oryza sativa), which provides numerous technical, economic and environmental benefits. Given these realities, this work aimed to characterize physiological responses, identify genes differentially expressed under flooding stress in Brazilian soybean genotypes with contrasting flooding tolerance, and select SNPs with potential use for marker-assisted selection. Soybean cultivars TECIRGA 6070 (flooding tolerant) and FUNDACEP 62 (flooding sensitive) were grown up to the V6 growth stage and then flooding stress was imposed. Total RNA was extracted from leaves 24 h after the stress was imposed and sequenced. In total, 421 induced and 291 repressed genes were identified in both genotypes. TECIRGA 6070 presented 284 and 460 genes up- and down-regulated, respectively, under flooding conditions. Of those, 100 and 148 genes were exclusively up- and down-regulated, respectively, in the tolerant genotype. Based on the RNA sequencing data, SNPs in differentially expressed genes in response to flooding stress were identified. Finally, 38 SNPs, located in genes with functional annotation for response to abiotic stresses, were found in TECIRGA 6070 and absent in FUNDACEP 62. To validate them, 22 SNPs were selected for designing KASP assays that were used to genotype a panel of 11 contrasting genotypes with known phenotypes. In addition, the phenotypic and grain yield impacts were analyzed in four field experiments using a panel of 166 Brazilian soybean genotypes. Five SNPs possibly related to flooding tolerance in Brazilian soybean genotypes were identified. The information generated from this research will be useful to develop soybean genotypes adapted to poorly drained soils or areas subject to flooding.
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Bragagnolo FS, Álvarez-Rivera G, Breitkreitz MC, Ibáñez E, Cifuentes A, Funari CS. Metabolite Profiling of Soy By-Products: A Comprehensive Approach. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2022; 70:7321-7341. [PMID: 35652359 DOI: 10.1021/acs.jafc.2c01050] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Soy is the major oilseed crop as soybeans are widely used to produce biofuel, food, and feed. Other parts of the plant are left on the ground after harvest. The accumulation of such by-products on the soil can cause environmental problems. This work presents for the first time a comprehensive metabolite profiling of soy by-products collected directly from the ground just after mechanical harvesting. A two-liquid-phase extraction using n-heptane and EtOH-H2O 7:3 (v/v) provided extracts with complete characterization by gas chromatography and ultra-high-performance liquid chromatography both coupled to time-of-flight mass spectrometry. A total of 146 metabolites, including flavones, flavonols, isoflavonoids, fatty acids, steroids, mono-, sesqui-, di-, and triterpenoids, were tentatively identified in soy by-products and soybeans. These proved to be sources of a wide range of bioactive metabolites, thus suggesting that they could be valorized while reducing potential environmental damage in line with a circular economy model.
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Affiliation(s)
- Felipe Sanchez Bragagnolo
- Green Biotech Network, School of Agricultural Sciences, São Paulo State University (UNESP), Botucatu, São Paulo - 18610-034, Brazil
- Laboratory of Foodomics, Institute of Food Science Research (CIAL-CSIC), Madrid 28049, Spain
| | - Gerardo Álvarez-Rivera
- Laboratory of Foodomics, Institute of Food Science Research (CIAL-CSIC), Madrid 28049, Spain
| | | | - Elena Ibáñez
- Laboratory of Foodomics, Institute of Food Science Research (CIAL-CSIC), Madrid 28049, Spain
| | - Alejandro Cifuentes
- Laboratory of Foodomics, Institute of Food Science Research (CIAL-CSIC), Madrid 28049, Spain
| | - Cristiano Soleo Funari
- Green Biotech Network, School of Agricultural Sciences, São Paulo State University (UNESP), Botucatu, São Paulo - 18610-034, Brazil
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Bragagnolo FS, Funari CS, Ibáñez E, Cifuentes A. Metabolomics as a Tool to Study Underused Soy Parts: In Search of Bioactive Compounds. Foods 2021; 10:foods10061308. [PMID: 34200265 PMCID: PMC8230045 DOI: 10.3390/foods10061308] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2021] [Revised: 06/01/2021] [Accepted: 06/03/2021] [Indexed: 12/19/2022] Open
Abstract
The valorization of agri-food by-products is essential from both economic and sustainability perspectives. The large quantity of such materials causes problems for the environment; however, they can also generate new valuable ingredients and products which promote beneficial effects on human health. It is estimated that soybean production, the major oilseed crop worldwide, will leave about 597 million metric tons of branches, leaves, pods, and roots on the ground post-harvesting in 2020/21. An alternative for the use of soy-related by-products arises from the several bioactive compounds found in this plant. Metabolomics studies have already identified isoflavonoids, saponins, and organic and fatty acids, among other metabolites, in all soy organs. The present review aims to show the application of metabolomics for identifying high-added-value compounds in underused parts of the soy plant, listing the main bioactive metabolites identified up to now, as well as the factors affecting their production.
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Affiliation(s)
- Felipe Sanchez Bragagnolo
- School of Agricultural Sciences, São Paulo State University (UNESP), Botucatu 18610-034, SP, Brazil; (F.S.B.); (C.S.F.)
- Laboratory of Foodomics, Institute of Food Science Research (CIAL-CSIC), 28049 Madrid, Spain;
| | - Cristiano Soleo Funari
- School of Agricultural Sciences, São Paulo State University (UNESP), Botucatu 18610-034, SP, Brazil; (F.S.B.); (C.S.F.)
| | - Elena Ibáñez
- Laboratory of Foodomics, Institute of Food Science Research (CIAL-CSIC), 28049 Madrid, Spain;
| | - Alejandro Cifuentes
- Laboratory of Foodomics, Institute of Food Science Research (CIAL-CSIC), 28049 Madrid, Spain;
- Correspondence:
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Niyukuri J, Raiti J, El Qarnifa S, El Abbassi A, Hafidi A. Potential of some autochthonous wild plants of Burundi for vegetable oil and valuable compounds production. BRAZ J BIOL 2019; 80:860-871. [PMID: 31800768 DOI: 10.1590/1519-6984.223481] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2019] [Accepted: 07/15/2019] [Indexed: 11/21/2022] Open
Abstract
Twelve species of indigenous plants have been studied in order to valorize some natural resources of Burundi (Eastern Africa) to investigate possibilities of vegetable oil production. Physicochemical properties and oil contents were determined from seeds harvested through five ecogeographic zones. From oilcake extracts, total sugars contents, proteins (TPrC), polyphenolic (TPhC), and flavonoids were quantified using spectrophotometry. Furthermore, antioxidant activity of oilcake extracts was assessed by 2, 2-diphenyl-b-picrylhydrazyl (DPPH) radical-scavenging and ferric reducing antioxidant power (FRAP) assays. All oil contents obtained were found to be quite similar to those of common oleaginous seeds. The two highest were found in Parinari curatellifolia (61.44 ± 4.81% Dry Matter) and Myrianthus arboreus (48.26 ± 5.96% DM). More than half of the species have shown TPrC ranging from 10 to 24% dry matter of oilcake (DM). Brachystegia longifolia was revealed exceptionally stronger antioxidant potential: effectiveness antiradical of 163.06 ± 26.29 mL/μg.min (DPPH assay) and reducing power of 2618.21 ± 161.22 GAE/100 g DM (FRAP assay). TPhC were positively correlated (p < 0.05) to the antioxidant activity. This pioneering work on these wild species highlight the potential for producing vegetable oil and valuable biomolecule sources likely for food, cosmetics, pharmacy and industry.
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Affiliation(s)
- J Niyukuri
- Food Sciences Laboratory, Department of Biology, Faculty of Sciences Semlalia, Cadi Ayyad, University, P.O. Box 2390, 40000, Marrakech, Morocco.,Department of Environmental Sciences and Technologies, Faculty of Agronomy and Bioengineering, University of Burundi, P.O. Box 2940, Bujumbura, Burundi
| | - J Raiti
- Food Sciences Laboratory, Department of Biology, Faculty of Sciences Semlalia, Cadi Ayyad, University, P.O. Box 2390, 40000, Marrakech, Morocco
| | - S El Qarnifa
- Food Sciences Laboratory, Department of Biology, Faculty of Sciences Semlalia, Cadi Ayyad, University, P.O. Box 2390, 40000, Marrakech, Morocco
| | - A El Abbassi
- Food Sciences Laboratory, Department of Biology, Faculty of Sciences Semlalia, Cadi Ayyad, University, P.O. Box 2390, 40000, Marrakech, Morocco
| | - A Hafidi
- Food Sciences Laboratory, Department of Biology, Faculty of Sciences Semlalia, Cadi Ayyad, University, P.O. Box 2390, 40000, Marrakech, Morocco
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