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Matturro B, Di Franca ML, Tonanzi B, Cruz Viggi C, Aulenta F, Di Leo M, Giandomenico S, Rossetti S. Enrichment of Aerobic and Anaerobic Hydrocarbon-Degrading Bacteria from Multicontaminated Marine Sediment in Mar Piccolo Site (Taranto, Italy). Microorganisms 2023; 11:2782. [PMID: 38004793 PMCID: PMC10673493 DOI: 10.3390/microorganisms11112782] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2023] [Revised: 11/07/2023] [Accepted: 11/14/2023] [Indexed: 11/26/2023] Open
Abstract
Marine sediments act as a sink for the accumulation of various organic contaminants such as polychlorobiphenyls (PCBs). These contaminants affect the composition and activity of microbial communities, particularly favoring those capable of thriving from their biodegradation and biotransformation under favorable conditions. Hence, contaminated environments represent a valuable biological resource for the exploration and cultivation of microorganisms with bioremediation potential. In this study, we successfully cultivated microbial consortia with the capacity for PCB removal under both aerobic and anaerobic conditions. The source of these consortia was a multicontaminated marine sediment collected from the Mar Piccolo (Taranto, Italy), one of Europe's most heavily polluted sites. High-throughput sequencing was employed to investigate the dynamics of the bacterial community of the marine sediment sample, revealing distinct and divergent selection patterns depending on the imposed reductive or oxidative conditions. The aerobic incubation resulted in the rapid selection of bacteria specialized in oxidative pathways for hydrocarbon transformation, leading to the isolation of Marinobacter salinus and Rhodococcus cerastii species, also known for their involvement in aerobic polycyclic aromatic hydrocarbons (PAHs) transformation. On the other hand, anaerobic incubation facilitated the selection of dechlorinating species, including Dehalococcoides mccartyi, involved in PCB reduction. This study significantly contributes to our understanding of the diversity, dynamics, and adaptation of the bacterial community in the hydrocarbon-contaminated marine sediment from one sampling point of the Mar Piccolo basin, particularly in response to stressful conditions. Furthermore, the establishment of consortia with biodegradation and biotransformation capabilities represents a substantial advancement in addressing the challenge of restoring polluted sites, including marine sediments, thus contributing to expanding the toolkit for effective bioremediation strategies.
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Affiliation(s)
- Bruna Matturro
- Water Research Institute (IRSA), National Research Council (CNR), 00010 Montelibretti, Italy (F.A.); (S.R.)
- National Biodiversity Future Center, 90133 Palermo, Italy
| | - Maria Letizia Di Franca
- Water Research Institute (IRSA), National Research Council (CNR), 00010 Montelibretti, Italy (F.A.); (S.R.)
| | - Barbara Tonanzi
- Water Research Institute (IRSA), National Research Council (CNR), 00010 Montelibretti, Italy (F.A.); (S.R.)
- National Biodiversity Future Center, 90133 Palermo, Italy
| | - Carolina Cruz Viggi
- Water Research Institute (IRSA), National Research Council (CNR), 00010 Montelibretti, Italy (F.A.); (S.R.)
| | - Federico Aulenta
- Water Research Institute (IRSA), National Research Council (CNR), 00010 Montelibretti, Italy (F.A.); (S.R.)
- National Biodiversity Future Center, 90133 Palermo, Italy
| | - Magda Di Leo
- Water Research Institute (IRSA), National Research Council (CNR), 00010 Montelibretti, Italy (F.A.); (S.R.)
| | - Santina Giandomenico
- Water Research Institute (IRSA), National Research Council (CNR), 00010 Montelibretti, Italy (F.A.); (S.R.)
| | - Simona Rossetti
- Water Research Institute (IRSA), National Research Council (CNR), 00010 Montelibretti, Italy (F.A.); (S.R.)
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Bako C, Martinez A, Ewald JM, Hua JBX, Ramotowski DJ, Dong Q, Schnoor JL, Mattes TE. Aerobic Bioaugmentation to Decrease Polychlorinated Biphenyl (PCB) Emissions from Contaminated Sediments to Air. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2022; 56:14338-14349. [PMID: 36178372 PMCID: PMC9583607 DOI: 10.1021/acs.est.2c01043] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/17/2022] [Revised: 09/15/2022] [Accepted: 09/19/2022] [Indexed: 06/16/2023]
Abstract
We conducted experiments to determine whether bioaugmentation with aerobic, polychlorinated biphenyl (PCB)-degrading microorganisms can mitigate polychlorinated biphenyl (PCB) emissions from contaminated sediment to air. Paraburkholderia xenovorans strain LB400 was added to bioreactors containing PCB-contaminated site sediment. PCB mass in both the headspace and aqueous bioreactor compartments was measured using passive samplers over 35 days. Time-series measurements of all 209 PCB congeners revealed a 57% decrease in total PCB mass accumulated in the vapor phase of bioaugmented treatments relative to non-bioaugmented controls, on average. A comparative congener-specific analysis revealed preferential biodegradation of lower-chlorinated PCBs (LC-PCBs) by LB400. Release of the most abundant congener (PCB 4 [2,2'-dichlorobiphenyl]) decreased by over 90%. Simulations with a PCB reactive transport model closely aligned with experimental observations. We also evaluated the effect of the phytogenic biosurfactant, saponin, on PCB bioavailability and biodegradation by LB400. Time-series qPCR measurements of biphenyl dioxygenase (bphA) genes showed that saponin better maintained bphA abundance, compared to the saponin-free treatment. These findings indicate that an active population of bioaugmented, aerobic PCB-degrading microorganisms can effectively lower PCB emissions and may therefore contribute to minimizing PCB inhalation exposure in communities surrounding PCB-contaminated sites.
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Affiliation(s)
- Christian
M. Bako
- The
Department of Civil & Environmental Engineering, 4105 Seamans
Center for the Engineering Arts & Sciences, University of Iowa, Iowa City, Iowa 52245, United States
- IIHR—Hydroscience
& Engineering, University of Iowa, Iowa City, Iowa 52242, United States
| | - Andres Martinez
- The
Department of Civil & Environmental Engineering, 4105 Seamans
Center for the Engineering Arts & Sciences, University of Iowa, Iowa City, Iowa 52245, United States
- IIHR—Hydroscience
& Engineering, University of Iowa, Iowa City, Iowa 52242, United States
| | - Jessica M. Ewald
- The
Department of Civil & Environmental Engineering, 4105 Seamans
Center for the Engineering Arts & Sciences, University of Iowa, Iowa City, Iowa 52245, United States
- IIHR—Hydroscience
& Engineering, University of Iowa, Iowa City, Iowa 52242, United States
| | - Jason B. X. Hua
- The
Department of Civil & Environmental Engineering, 4105 Seamans
Center for the Engineering Arts & Sciences, University of Iowa, Iowa City, Iowa 52245, United States
- IIHR—Hydroscience
& Engineering, University of Iowa, Iowa City, Iowa 52242, United States
| | - David J. Ramotowski
- The
Department of Civil & Environmental Engineering, 4105 Seamans
Center for the Engineering Arts & Sciences, University of Iowa, Iowa City, Iowa 52245, United States
- IIHR—Hydroscience
& Engineering, University of Iowa, Iowa City, Iowa 52242, United States
| | - Qin Dong
- The
Department of Civil & Environmental Engineering, 4105 Seamans
Center for the Engineering Arts & Sciences, University of Iowa, Iowa City, Iowa 52245, United States
- IIHR—Hydroscience
& Engineering, University of Iowa, Iowa City, Iowa 52242, United States
| | - Jerald L. Schnoor
- The
Department of Civil & Environmental Engineering, 4105 Seamans
Center for the Engineering Arts & Sciences, University of Iowa, Iowa City, Iowa 52245, United States
- IIHR—Hydroscience
& Engineering, University of Iowa, Iowa City, Iowa 52242, United States
| | - Timothy E. Mattes
- The
Department of Civil & Environmental Engineering, 4105 Seamans
Center for the Engineering Arts & Sciences, University of Iowa, Iowa City, Iowa 52245, United States
- IIHR—Hydroscience
& Engineering, University of Iowa, Iowa City, Iowa 52242, United States
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