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Guo F, Liu D, Mo S, Li Q, Meng J, Huang Q. Assessment of Phenological Dynamics of Different Vegetation Types and Their Environmental Drivers with Near-Surface Remote Sensing: A Case Study on the Loess Plateau of China. PLANTS (BASEL, SWITZERLAND) 2024; 13:1826. [PMID: 38999666 PMCID: PMC11244282 DOI: 10.3390/plants13131826] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2024] [Revised: 06/22/2024] [Accepted: 07/01/2024] [Indexed: 07/14/2024]
Abstract
Plant phenology is an important indicator of the impact of climate change on ecosystems. We have continuously monitored vegetation phenology using near-surface remote sensing, i.e., the PhenoCam in a gully region of the Loess Plateau of China from March 2020 to November 2022. In each image, three regions of interest (ROIs) were selected to represent different types of vegetation (scrub, arbor, and grassland), and five vegetation indexes were calculated within each ROI. The results showed that the green chromatic coordinate (GCC), excess green index (ExG), and vegetation contrast index (VCI) all well-captured seasonal changes in vegetation greenness. The PhenoCam captured seasonal trajectories of different vegetation that reflect differences in vegetation growth. Such differences may be influenced by external abiotic environmental factors. We analyzed the nonlinear response of the GCC series to environmental variables with the generalized additive model (GAM). Our results suggested that soil temperature was an important driver affecting plant phenology in the Loess gully region, especially the scrub showed a significant nonlinear response to soil temperature change. Since in situ phenology monitoring experiments of the small-scale on the Loess Plateau are still relatively rare, our work provides a reference for further understanding of vegetation phenological variations and ecosystem functions on the Loess Plateau.
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Affiliation(s)
- Fengnian Guo
- State Key Laboratory of Eco-Hydraulics in Northwest Arid Region of China, School of Water Resources and Hydropower, Xi’an University of Technology, Xi’an 710048, China; (F.G.); (S.M.); (J.M.); (Q.H.)
| | - Dengfeng Liu
- State Key Laboratory of Eco-Hydraulics in Northwest Arid Region of China, School of Water Resources and Hydropower, Xi’an University of Technology, Xi’an 710048, China; (F.G.); (S.M.); (J.M.); (Q.H.)
| | - Shuhong Mo
- State Key Laboratory of Eco-Hydraulics in Northwest Arid Region of China, School of Water Resources and Hydropower, Xi’an University of Technology, Xi’an 710048, China; (F.G.); (S.M.); (J.M.); (Q.H.)
| | - Qiang Li
- Center for Ecological Forecasting and Global Change, College of Forestry, Northwest A&F University, Yangling 712100, China;
| | - Jingjing Meng
- State Key Laboratory of Eco-Hydraulics in Northwest Arid Region of China, School of Water Resources and Hydropower, Xi’an University of Technology, Xi’an 710048, China; (F.G.); (S.M.); (J.M.); (Q.H.)
| | - Qiang Huang
- State Key Laboratory of Eco-Hydraulics in Northwest Arid Region of China, School of Water Resources and Hydropower, Xi’an University of Technology, Xi’an 710048, China; (F.G.); (S.M.); (J.M.); (Q.H.)
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Sales-Baptista E, Ferraz-de-Oliveira MI, Terra-Braga M, de Castro JAL, Serrano J, d’Abreu MC. Characterization of grazing behaviour microstructure using point-of-view cameras. PLoS One 2022; 17:e0265037. [PMID: 35302988 PMCID: PMC8932577 DOI: 10.1371/journal.pone.0265037] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2021] [Accepted: 02/22/2022] [Indexed: 11/18/2022] Open
Abstract
Grazing patterns, intake structure, and diet selection are dynamic responses to animals' feeding environment. This study uses video sequences from animal-borne cameras to capture time- and scale-dependent grazing behaviour variables related to sward explanatory conditions. We observed grazing 'through' the sheep's eyes using point-of-view (POV) cameras coupled with event logging software. Time-specific sward features were measured by sampling 'really' grazed patches identified by applying a global navigation satellite system (GNSS) precision-grazing approach. Sward variables on a Mediterranean native sward were measured for two years during the active spring plant-growth cycle. Overall, the results demonstrate that POV cameras were able to capture grazing behaviour fine-tuning to changes in sward characteristics. Sheep compensate for the decrease in sward quantity and nutritive value by increasing the size and duration at each behavioural scale (i.e., meal, bout, and station) while increasing the bout rate and decreasing the station rate. Diet composition also changed as sward matured. The proportion of forbs in the diet remained high in early and late spring, and forbs and legumes were preferred to grasses in early spring. Grazing selectivity was more pronounced in late spring, with sheep favouring the middle stratum of the sward's vertical structure, preferring green vegetative material, while enlarging the feeding niches' span and spending more time at each niche, consequently reducing the station rate. Although data collected by individual animal-borne POV cameras were representative of the flock behaviour, they may underestimate the total grazing time outside major meals. The results indicate that the use of animal-borne video cameras is suitable for assessing variations in sheep grazing behaviour patterns in complex swards.
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Affiliation(s)
- Elvira Sales-Baptista
- Departamento de Zootecnia, Mediterranean Institute for Agriculture, Environment and Development (MED), Universidade de Évora, Évora, Portugal
| | - Maria Isabel Ferraz-de-Oliveira
- Departamento de Zootecnia, Mediterranean Institute for Agriculture, Environment and Development (MED), Universidade de Évora, Évora, Portugal
| | - Marina Terra-Braga
- Master 1 Biologie-Agronomie-Santé, Parcours Comportement Animal et Humain Université de Rennes, Rennes, France
| | - José António Lopes de Castro
- Departamento de Zootecnia, Mediterranean Institute for Agriculture, Environment and Development (MED), Universidade de Évora, Évora, Portugal
| | - João Serrano
- Departamento de Engenharia, Mediterranean Institute for Agriculture, Environment and Development (MED), Universidade de Évora, Évora, Portugal
| | - Manuel Cancela d’Abreu
- Departamento de Zootecnia, Mediterranean Institute for Agriculture, Environment and Development (MED), Universidade de Évora, Évora, Portugal
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Do details matter? Disentangling the processes related to plant species interactions in two grassland models of different complexity. Ecol Modell 2021. [DOI: 10.1016/j.ecolmodel.2021.109737] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Guan P, Zheng Y, Lei G. Analysis of canopy phenology in man-made forests using near-earth remote sensing. PLANT METHODS 2021; 17:104. [PMID: 34641927 PMCID: PMC8507189 DOI: 10.1186/s13007-021-00803-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/19/2021] [Accepted: 09/29/2021] [Indexed: 06/13/2023]
Abstract
BACKGROUND Forest canopies are highly sensitive to their growth, health, and climate change. The study aims to obtain time sequence images in mix foresters using a near-earth remote sensing method to track the seasonal variation in the color index and select the optimal color index. Three different regions of interest (RIOs) were defined and six color indexes (GRVI, HUE, GGR, RCC, GCC, and GEI) were calculated to analyze the microenvironment difference. The key phenological phase was identified using the double logistic model and the derivative method, and the phenology forecast of color indexes was performed based on the long short-term memory (LSTM) model. RESULTS The results showed that the same color index in different RIOs and different color indexes in the same RIO present a slight difference in the days of growth and the days corresponding to the peak value, exhibiting different phenological phases; the mean squared error (MSE), root mean squared error (RMSE), mean absolute error (MAE), and mean absolute percentage error (MAPE) of the LSTM model was 0.0016, 0.0405, 0.0334, and 12.55%, respectively, indicating that this model has a good forecast effect. CONCLUSIONS In different areas of the same forest, differences in the micro-ecological environment in the canopies were prevalent, with their internal growth mechanism being affected by different cultivation ways and the external environment. Besides, the optimal color index also varies with species in phenological response, that is, different color indexes are used for different forests. With the data of color indexes as the training set and forecast set, the feasibility of the LSTM model in phenology forecast is verified.
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Affiliation(s)
- Peng Guan
- School of Engineering, Beijing Forestry University, Beijing, China
- Beijing Laboratory of Urban and Rural Ecological Environment, Beijing Municipal Education Commission, Beijing, China
| | - Yili Zheng
- School of Engineering, Beijing Forestry University, Beijing, China.
- Beijing Laboratory of Urban and Rural Ecological Environment, Beijing Municipal Education Commission, Beijing, China.
| | - Guannan Lei
- School of Engineering, Beijing Forestry University, Beijing, China
- Beijing Laboratory of Urban and Rural Ecological Environment, Beijing Municipal Education Commission, Beijing, China
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Tashakor S, Chamani A. Temporal variability of noise pollution attenuation by vegetation in urban parks. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:23143-23151. [PMID: 33442797 DOI: 10.1007/s11356-021-12355-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/21/2020] [Accepted: 01/02/2021] [Indexed: 05/17/2023]
Abstract
The present study proposed a novel approach to investigate variability in the acoustic behavior of a number of deciduous tree-dominated narrow and long urban parks in Isfahan city, central Iran, between winter leaf fall and summer foliage. Noise levels (Lq30 in dB) were measured along two adjacent sides of the parks: along the road-adjacent side (Ro transect) and the relatively calmer river-adjacent side of the parks (Ri transect) during 4-17 January 2018 and 7-14 August 2019. Using Sentinel-2 images, two NDVI maps were also produced for these two periods to determine how changes in green biomass were associated with changes in noise levels. Using ANOVA, a significant difference was found in Ri-Lq30 and NDVI maps between winter and summer (p = 0.0), while the difference was insignificant for Ri-Lq30 (p = 0.1). We also developed two multiple linear regressions, one for each season, to assess the dependency of Ri-Lq30 to the intensity of vegetation and Ro-Lq30 and compare the two seasons by performing a t test analysis on the intercept and slope of the models, with results suggesting there is a significant difference in the association of green biomass and noise levels measured inside the parks between leaf fall and foliage time (p = 0.04). Our results indicated the temporal variability of park characteristics in providing calmer urban landscapes throughout the year.
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Affiliation(s)
- Shahla Tashakor
- Environmental Science Department, Isfahan (Khorasgan) Branch, Islamic Azad University, Isfahan, Iran
| | - Atefeh Chamani
- Environmental Science Department, Isfahan (Khorasgan) Branch, Islamic Azad University, Isfahan, Iran.
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Development of a Miniaturized Mobile Mapping System for In-Row, Under-Canopy Phenotyping. REMOTE SENSING 2021. [DOI: 10.3390/rs13020276] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
This paper focuses on the development of a miniaturized mobile mapping platform with advantages over current agricultural phenotyping systems in terms of acquiring data that facilitate under-canopy plant trait extraction. The system is based on an unmanned ground vehicle (UGV) for in-row, under-canopy data acquisition to deliver accurately georeferenced 2D and 3D products. The paper addresses three main aspects pertaining to the UGV development: (a) architecture of the UGV mobile mapping system (MMS), (b) quality assessment of acquired data in terms of georeferencing information as well as derived 3D point cloud, and (c) ability to derive phenotypic plant traits using data acquired by the UGV MMS. The experimental results from this study demonstrate the ability of the UGV MMS to acquire dense and accurate data over agricultural fields that would facilitate highly accurate plant phenotyping (better than above-canopy platforms such as unmanned aerial systems and high-clearance tractors). Plant centers and plant count with an accuracy in the 90% range have been achieved.
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Austin CM, Ramp D. Flight responses of eastern gray kangaroos to benign or harmful human behavior. Ecol Evol 2019; 9:13824-13834. [PMID: 31938484 PMCID: PMC6953569 DOI: 10.1002/ece3.5818] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2019] [Revised: 10/01/2019] [Accepted: 10/04/2019] [Indexed: 11/23/2022] Open
Abstract
Globally, wilderness is being converted for rural and agricultural land use. In countryside landscapes, many habitat structures remain intact, providing suitable habitat for wildlife species that can accurately assess novel risks and develop tolerance to benign disturbances. Associative learning that promotes avoidance and also facilitates desensitization to benign disturbance is key to persisting in these landscapes. Conversely, learning to distinguish and avoid negative interactions with humans, like hunting, is vital. To determine if eastern gray kangaroos are capable of learning from previous interactions with humans, we tested the flight responses of wild kangaroos which have previously experienced either low or high frequencies of harmful and benign encounters with humans. We found that eastern gray kangaroos rapidly habituated to benign disturbance as there was no significant difference in assessment distance between groups that previously experienced low or high frequencies of disturbance. The threat of harmful disturbances was not as quickly learnt, as groups that experienced low frequencies of harmful disturbance delayed flight longer than those experiencing frequent harm. We found that the influence of environmental and group parameters on a kangaroo's decision to flee depended on the intent and frequency of previous interactions with humans. Our study indicates that kangaroos are learning from previous encounters with humans, correctly assessing novel risks which may be contributing to their persistence in countryside landscapes.
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Affiliation(s)
- Caitlin M. Austin
- Centre for Compassionate ConservationFaculty of ScienceUniversity of Technology SydneyUltimoNSWAustralia
| | - Daniel Ramp
- Centre for Compassionate ConservationFaculty of ScienceUniversity of Technology SydneyUltimoNSWAustralia
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Austin CM, Ramp D. Behavioural Plasticity by Eastern Grey Kangaroos inResponse to Human Behaviour. Animals (Basel) 2019; 9:ani9050244. [PMID: 31096679 PMCID: PMC6562978 DOI: 10.3390/ani9050244] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2019] [Revised: 04/11/2019] [Accepted: 05/01/2019] [Indexed: 12/03/2022] Open
Abstract
Simple Summary Many species of wildlife live in landscapes they share with people. Some exploit resources and protection provided by close proximity to people, while others learn to avoid people all together. In this study, we sought to test whether individuals from a population of eastern grey kangaroos altered grouping and spacing behaviour in response to human presence, depending upon whether the intent and actions of those people were benign or harmful. Under harmful conditions, kangaroos failed to form larger groups when far from cover, however, this typical antipredator grouping behaviour persisted when human disturbances were benign. These differences in grouping and spacing behaviour suggest that kangaroos can exhibit bidirectional behavioural plasticity at fine scales, a trait that may confer adaptive advantages when sharing landscapes with humans. Abstract Sharing landscapes with humans is an increasingly fraught challenge for wildlife across the globe. While some species benefit from humans by exploiting novel opportunities (e.g., provision of resources or removal of competitors or predators), many wildlife experience harmful effects, either directly through persecution or indirectly through loss of habitat. Consequently, some species have been shown to be attracted to human presence while others avoid us. For any given population of a single species, though, the question of whether they can recognise and change their response to human presence depending on the type of human actions (i.e., either positive or negative) has received little attention to date. In this study, we chose to examine the behavioural plasticity within a single population of eastern grey kangaroos (Macropus giganteus) to both positive and negative human activity. Within a relatively small and contiguous landscape, we identified areas where kangaroos experience a combination of either low and high frequencies of benign and harmful human disturbances. From six sampling sessions over five months, we found that density and group sizes were higher where humans acted benignly towards them, and that these groups had higher representations of sub-adults and juveniles than where humans had harmful intentions. Importantly, we found that the vital antipredator strategy of increasing group size with distance from cover was not detectable at sites with low and high levels of harm. Our findings suggest that these kangaroos are recognising and adjusting their behavioural response to humans at fine spatial scales, a plasticity trait that may be key to the survival of these species in human dominated landscapes.
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Affiliation(s)
- Caitlin M Austin
- Centre for Compassionate Conservation, Faculty of Science, University of Technology Sydney,Ultimo, NSW 2007, Australia.
| | - Daniel Ramp
- Centre for Compassionate Conservation, Faculty of Science, University of Technology Sydney,Ultimo, NSW 2007, Australia.
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Comparison of the Economic Value of Urban Trees through Surveys with Photographs in Two Seasons. FORESTS 2018. [DOI: 10.3390/f9030132] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Spatiotemporal dynamics of grassland aboveground biomass on the Qinghai-Tibet Plateau based on validated MODIS NDVI. Sci Rep 2017. [PMID: 28646198 PMCID: PMC5482894 DOI: 10.1038/s41598-017-04038-4] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
Abstract
Spatiotemporal dynamics of aboveground biomass (AGB) is a fundamental problem for grassland environmental management on the Qinghai-Tibet Plateau (QTP). Moderate Resolution Imaging Spectroradiometer (MODIS) Normalized Difference Vegetation Index (NDVI) data can feasibly be used to estimate AGB at large scales, and their precise validation is necessary to utilize them effectively. In our study, the clip-harvest method was used at 64 plots in QTP grasslands to obtain actual AGB values, and a handheld hyperspectral spectrometer was used to calculate field-measured NDVI to validate MODIS NDVI. Based on the models between NDVI and AGB, AGB dynamics trends during 2000–2012 were analyzed. The results showed that the AGB in QTP grasslands increased during the study period, with 70% of the grasslands undergoing increases mainly in the Qinghai Province. Also, the meadow showed a larger increasing trend than steppe. Future AGB dynamic trends were also investigated using a combined analysis of the slope values and the Hurst exponent. The results showed high sustainability of AGB dynamics trends after the study period. Predictions indicate 60% of the steppe and meadow grasslands would continue to increase in AGB, while 25% of the grasslands would remain in degradation, with most of them distributing in Tibet.
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Use of Unmanned Aerial Vehicles for Monitoring Recovery of Forest Vegetation on Petroleum Well Sites. REMOTE SENSING 2017. [DOI: 10.3390/rs9050413] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Alberton B, Torres RDS, Cancian LF, Borges BD, Almeida J, Mariano GC, Santos JD, Morellato LPC. Introducing digital cameras to monitor plant phenology in the tropics: applications for conservation. Perspect Ecol Conserv 2017. [DOI: 10.1016/j.pecon.2017.06.004] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
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Extracting Plant Phenology Metrics in a Great Basin Watershed: Methods and Considerations for Quantifying Phenophases in a Cold Desert. SENSORS 2016; 16:s16111948. [PMID: 27869752 PMCID: PMC5134607 DOI: 10.3390/s16111948] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/26/2016] [Revised: 11/09/2016] [Accepted: 11/15/2016] [Indexed: 11/17/2022]
Abstract
Plant phenology is recognized as important for ecological dynamics. There has been a recent advent of phenology and camera networks worldwide. The established PhenoCam Network has sites in the United States, including the western states. However, there is a paucity of published research from semi-arid regions. In this study, we demonstrate the utility of camera-based repeat digital imagery and use of R statistical phenopix package to quantify plant phenology and phenophases in four plant communities in the semi-arid cold desert region of the Great Basin. We developed an automated variable snow/night filter for removing ephemeral snow events, which allowed fitting of phenophases with a double logistic algorithm. We were able to detect low amplitude seasonal variation in pinyon and juniper canopies and sagebrush steppe, and characterize wet and mesic meadows in area-averaged analyses. We used individual pixel-based spatial analyses to separate sagebrush shrub canopy pixels from interspace by determining differences in phenophases of sagebrush relative to interspace. The ability to monitor plant phenology with camera-based images fills spatial and temporal gaps in remotely sensed data and field based surveys, allowing species level relationships between environmental variables and phenology to be developed on a fine time scale thus providing powerful new tools for land management.
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Using Ordinary Digital Cameras in Place of Near-Infrared Sensors to Derive Vegetation Indices for Phenology Studies of High Arctic Vegetation. REMOTE SENSING 2016. [DOI: 10.3390/rs8100847] [Citation(s) in RCA: 44] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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15
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Evaluating the level of agreement between human and time-lapse camera observations of understory plant phenology at multiple scales. ECOL INFORM 2016. [DOI: 10.1016/j.ecoinf.2016.02.005] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Nagai S, Ichie T, Yoneyama A, Kobayashi H, Inoue T, Ishii R, Suzuki R, Itioka T. Usability of time-lapse digital camera images to detect characteristics of tree phenology in a tropical rainforest. ECOL INFORM 2016. [DOI: 10.1016/j.ecoinf.2016.01.006] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Nasahara KN, Nagai S. Review: Development of an in situ observation network for terrestrial ecological remote sensing: the Phenological Eyes Network (PEN). Ecol Res 2015. [DOI: 10.1007/s11284-014-1239-x] [Citation(s) in RCA: 88] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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