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Sreelakshmi P, Krishna BS, Santhisudha S, Murali S, Reddy GR, Venkataramaiah C, Rao PV, Reddy AVK, Swetha V, Zyryanov GV, Reddy CD, Reddy CS. Synthesis and biological evaluation of novel dialkyl (4-amino-5H-chromeno[2,3-d]pyrimidin-5-yl)phosphonates. Bioorg Chem 2022; 129:106121. [PMID: 36075177 DOI: 10.1016/j.bioorg.2022.106121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2022] [Revised: 08/28/2022] [Accepted: 08/29/2022] [Indexed: 11/02/2022]
Abstract
This study reports the design and synthesis of novel dialkyl (4-amino-5H-chromeno[2,3-d]pyrimidin-5-yl)phosphonates as potential antitumor agents against A549 (lung cancer), DU-145 (prostate cancer), PC-3 (prostate cancer), HeLa (cervical cancer) and MCF-7 (breast cancer), cell lines evidenced from the in vitro antitumor studies performed by MTT assay (across 10-30 μM concentrations). The structural eminence of these synthesized molecules has emanated by designing the structural core by uniting the chromene, pyrimidine and phosphonate moieties into one, which has augmented their novelty and made them unreported. Further the deep structural activity relationship study investigations articulated that the title compounds are promising drug-like compounds and potential inhibitor of histidine amino acid residue present on the respective enzymatic proteins [3QJZ (A549), 3VHE (DU-145), 3V49 (PC-3), 3F81 (HeLa), & 3R7Q (MCF-7)] of the cell lines screened and are identified as responsible for the multi-faceted antitumor activities predicted in vitro. The obtained results were further supported by molecular docking studies, QSAR, ADMET, and bioactivity studies which have supported them as potential BBB penetrable molecules and proficient CNS active neuro-protective agents during drug delivery.
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Affiliation(s)
- Poola Sreelakshmi
- Department of Chemistry, Sri Venkateswara University, Tirupati 517 502, India
| | | | - Sarva Santhisudha
- Department of Chemistry, Sri Venkateswara University, Tirupati 517 502, India
| | - Sudileti Murali
- Department of Chemistry, Sri Venkateswara University, Tirupati 517 502, India
| | | | - Chintha Venkataramaiah
- Department of Zoology, Sri Venkateswara University, Tirupati 517 502, India; Department of Medical Environmental Biology and Tropical Medicine, School of Medicine, Kangwon National University, Chuncheon, Gangwon-Do 24341, Republic of Korea
| | - Pasupuleti Visweswara Rao
- Centre for International Collaboration and Research, Reva University, Rukmini Knowledge Park, Bangalore 560 064, India; Department of Biochemistry, Faculty of Medicine and Health Sciences, Abdurrab University, Jl Riau Ujung No. 73, Pekanbaru 28292, Riau, Indonesia.
| | - Avula Vijaya Kumar Reddy
- Chemical Engineering Institute, Ural Federal University, Yekaterinburg 620002, Russian Federation
| | - Vallela Swetha
- Chemical Engineering Institute, Ural Federal University, Yekaterinburg 620002, Russian Federation
| | - Grigory Vasilievich Zyryanov
- Chemical Engineering Institute, Ural Federal University, Yekaterinburg 620002, Russian Federation; Ural Division of the Russian Academy of Sciences, I. Ya. Postovskiy Institute of Organic Synthesis, 22 S., Kovalevskoy Street, Yekaterinburg 620219, Russian Federation
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Synthesis and antimicrobial evaluation of novel polyheterocyclic systems derived from cyclopenta[4',5']pyrido[3',2':4,5]furo[3,2-d]pyrimidine. Chem Heterocycl Compd (N Y) 2021. [DOI: 10.1007/s10593-021-02870-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Sirakanyan SN, Hakobyan EK, Hovakimyan AA. Synthesis of New Furo[2,3-b]pyridine and Furo[3,2-d]pyrimidine Derivatives. RUSSIAN JOURNAL OF ORGANIC CHEMISTRY 2019. [DOI: 10.1134/s1070428019090136] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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DFT study on the reaction mechanism and regioselectivity for the [1,2]-anionic rearrangement of 2-benzyloxypyridine derivatives. Tetrahedron 2019. [DOI: 10.1016/j.tet.2019.06.018] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Sirakanyan SN, Kartsev VG, Hakobyan EK, Hovakimyan AA. Synthesis of New Heterocyclic Systems on the Basis of 7-Benzyl-3-chloro-1-(morpholin-4-yl)-5,6,7,8-tetrahydro-2,7-naphthiridine-4-carbonitrile. RUSSIAN JOURNAL OF ORGANIC CHEMISTRY 2018. [DOI: 10.1134/s1070428018060155] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Design, synthesis, and biological evaluation of novel catecholopyrimidine based PDE4 inhibitor for the treatment of atopic dermatitis. Eur J Med Chem 2018; 145:673-690. [DOI: 10.1016/j.ejmech.2017.12.069] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2017] [Revised: 12/14/2017] [Accepted: 12/18/2017] [Indexed: 12/19/2022]
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7
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DFT/ and TD-DFT/PCM calculations of molecular structure, spectroscopic characterization, NLO and NBO analyses of 4-(4-chlorophenyl) and 4-[4-(dimethylamino) phenyl]-2-oxo-1,2,5,6-tetrahydrobenzo[ h ]quinoline-3-carbonitrile dyes. J Mol Liq 2016. [DOI: 10.1016/j.molliq.2016.07.146] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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D'Ursi P, Guariento S, Trombetti G, Orro A, Cichero E, Milanesi L, Fossa P, Bruno O. Further Insights in the Binding Mode of Selective Inhibitors to Human PDE4D Enzyme Combining Docking and Molecular Dynamics. Mol Inform 2016; 35:369-81. [PMID: 27546041 PMCID: PMC5094559 DOI: 10.1002/minf.201501033] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2015] [Accepted: 05/19/2016] [Indexed: 12/18/2022]
Abstract
Alzheimer's disease has recently emerged as a possible field of application for PDE4D inhibitors (PDE4DIs). The great structure similarity among the various PDE4 isoforms and, furthermore, the lack of the full length crystal structure of the enzyme, impaired the rational design of new selective PDE4DIs. In this paper, with the aim of exploring new insights into the PDE4D binding, we tackled the problem by performing a computational study based on docking simulations combined with molecular dynamics (D-MD). Our work uniquely identified the binding mode and the key residues involved in the interaction with a number of in-house catechol iminoether derivatives, acting as PDE4DIs. Moreover, the new binding mode was tested using a series of analogues previously reported by us and it was used to confirm their key structural features to allow PDE4D inhibition. The binding model disclosed within the current computational study may prove to be useful to further advance the design and synthesis of novel, more potent and selective, PDE4D inhibitors.
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Affiliation(s)
- Pasqualina D'Ursi
- Institute for Biomedical Technologies e National Research Council (ITB-CNR), Via Fratelli Cervi 93, 20090, Segrate (MI, Italy
| | - Sara Guariento
- Department of Pharmacy, Section of Medicinal Chemistry, School of Medical and Pharmaceutical Sciences, University of Genoa, Viale Benedetto XV 3, 16132, Genova (GE, Italy
| | - Gabriele Trombetti
- Institute for Biomedical Technologies e National Research Council (ITB-CNR), Via Fratelli Cervi 93, 20090, Segrate (MI, Italy
| | - Alessandro Orro
- Institute for Biomedical Technologies e National Research Council (ITB-CNR), Via Fratelli Cervi 93, 20090, Segrate (MI, Italy
| | - Elena Cichero
- Department of Pharmacy, Section of Medicinal Chemistry, School of Medical and Pharmaceutical Sciences, University of Genoa, Viale Benedetto XV 3, 16132, Genova (GE, Italy
| | - Luciano Milanesi
- Institute for Biomedical Technologies e National Research Council (ITB-CNR), Via Fratelli Cervi 93, 20090, Segrate (MI, Italy
| | - Paola Fossa
- Department of Pharmacy, Section of Medicinal Chemistry, School of Medical and Pharmaceutical Sciences, University of Genoa, Viale Benedetto XV 3, 16132, Genova (GE, Italy .
| | - Olga Bruno
- Department of Pharmacy, Section of Medicinal Chemistry, School of Medical and Pharmaceutical Sciences, University of Genoa, Viale Benedetto XV 3, 16132, Genova (GE, Italy
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Dashyan SS, Paronikyan EG, Noravyan AS, Paronikyan RG. Synthesis and Anticonvulsive Activity of 5-Pyrrolidin-1-Ylpyrano[4″,3″:4′,5′]Pyrido-3′,2′:4,5]Thieno[3,2-D]Pyrimidine Derivatives. Pharm Chem J 2016. [DOI: 10.1007/s11094-016-1426-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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The azide/tetrazole equilibrium: an investigation in the series of furo- and thieno[2,3-e]tetrazolo[3,2-d]pyrimidine derivatives. Tetrahedron 2016. [DOI: 10.1016/j.tet.2016.02.048] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Sirakanyan SN, Hovakimyan AA, Noravyan AS. Synthesis, transformations and biological properties of furo[2,3-b]pyridines. RUSSIAN CHEMICAL REVIEWS 2015. [DOI: 10.1070/rcr4447] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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12
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Sirakanyan SN, Spinelli D, Geronikaki A, Hovakimyan AA, Noravyan AS. On the reaction of 2-[(4-cyano-5,6,7,8-tetrahydroisoquinolin-3-yl)oxy]acetamides with bases: 1-amino-6,7,8,9-tetrahydrofuro[2,3-c]isoquinoline-2-carboxamides and 3-amino-4-cyano-5,6,7,8-tetrahydroisoquinolines via a Smiles-type rearrangement. Tetrahedron 2015. [DOI: 10.1016/j.tet.2015.03.114] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
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Stroganova TA, Vasilin VK, Shestakova PS, Red'kin VM, Krapivin GD. Novel Rearrangement of 3-Acylaminofuro[2,3-b]pyridines into 3-(oxazol-4-yl)pyridin-2-ones. J Heterocycl Chem 2014. [DOI: 10.1002/jhet.2032] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Tatyana A. Stroganova
- Kuban State Technological University; Moskovskaya Street 2 Krasnodar 350072 Russian Federation
| | - Vladimir K. Vasilin
- Kuban State Technological University; Moskovskaya Street 2 Krasnodar 350072 Russian Federation
| | - Polina S. Shestakova
- Kuban State Technological University; Moskovskaya Street 2 Krasnodar 350072 Russian Federation
| | - Viktor M. Red'kin
- Kuban State Technological University; Moskovskaya Street 2 Krasnodar 350072 Russian Federation
| | - Gennady D. Krapivin
- Kuban State Technological University; Moskovskaya Street 2 Krasnodar 350072 Russian Federation
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Gewald R, Grunwald C, Egerland U. Discovery of triazines as potent, selective and orally active PDE4 inhibitors. Bioorg Med Chem Lett 2013; 23:4308-14. [PMID: 23806553 DOI: 10.1016/j.bmcl.2013.05.099] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2013] [Revised: 05/27/2013] [Accepted: 05/31/2013] [Indexed: 01/21/2023]
Abstract
Expanding on HTS hit 4 afforded a series of [1,3,5]triazine derivatives as novel PDE4 inhibitors. The SAR development and optimization process with the emphasis on ligand efficiency and physicochemical properties led to the discovery of compound 44 as a potent, selective and orally active PDE4 inhibitor.
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Affiliation(s)
- Rainer Gewald
- BioCrea GmbH, Meissner Strasse 191, 01445 Radebeul, Germany.
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