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Ahmed K, Choudhary MI, Saleem RSZ. Heterocyclic pyrimidine derivatives as promising antibacterial agents. Eur J Med Chem 2023; 259:115701. [PMID: 37591149 DOI: 10.1016/j.ejmech.2023.115701] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2023] [Revised: 07/18/2023] [Accepted: 07/29/2023] [Indexed: 08/19/2023]
Abstract
Antibiotic resistance is a growing public health concern. The quest to understand the underlying mechanisms of drug resistance needs to be accompanied by an expanded arsenal of drugs. This calls for the development of new compounds with anti-bacterial properties. The ease of functionalization of the pyrimidine core, to produce structurally distinct compound libraries, has made pyrimidine a privileged structure for identifying anti-bacterial hits. The activity of pyrimidine derivatives can be attributed to the various subunits linked with the main core, especially at C-2 or C-4 or C-6. Particularly, presence of NH2 attached to C-2 of the pyrimidine nucleus has been shown to enhance the anti-bacterial activity against pathogenic Gram-positive and Gram-negative bacteria. The diversity of synthetic routes used for the synthesis of such compounds, the reported biological activities, and a growing need to develop novel anti-bacterial agents warrant a review that presents recent reports on the synthesis and anti-bacterial activities of pyrimidine-containing compounds.
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Affiliation(s)
- Kainat Ahmed
- Department of Chemistry and Chemical Engineering, SBASSE, Lahore University of Management Sciences, Sector-U, DHA, Lahore, 54792, Pakistan
| | - M Iqbal Choudhary
- Dr. Panjwani Center for Molecular Medicine and Drug Research, International Center for Chemical and Biological Sciences, University of Karachi, Karachi, 75270, Pakistan
| | - Rahman Shah Zaib Saleem
- Department of Chemistry and Chemical Engineering, SBASSE, Lahore University of Management Sciences, Sector-U, DHA, Lahore, 54792, Pakistan.
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2
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Design, Cytotoxicity and Antiproliferative Activity of 4-Amino-5-methyl-thieno[2,3-d]pyrimidine-6-carboxylates against MFC-7 and MDA-MB-231 Breast Cancer Cell Lines. Molecules 2022; 27:molecules27103314. [PMID: 35630793 PMCID: PMC9148072 DOI: 10.3390/molecules27103314] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2022] [Revised: 05/13/2022] [Accepted: 05/18/2022] [Indexed: 11/17/2022] Open
Abstract
Novel 4-amino-thieno[2,3-d]pyrimidine-6-carboxylates substituted at the second position were prepared by cyclocondensation of 2-amino-3-cyano-thiophene and aryl nitriles in an acidic medium. The design of the target compounds was based on structural optimization. The derivatives thus obtained were tested in vitro against human and mouse cell lines. The examination of the compound effects on BLAB 3T3 and MFC-10A cells showed that they are safe, making them suitable for subsequent experiments to establish their antitumor activity. The photoirritancy factor of the compounds was calculated. Using the MTT test, the antiproliferative activity to MCF-10A, MCF-7 and MDA-MB-231 cell lines was estimated. The best antiproliferative effect in respect to the MCF-7 cell line revealed compound 2 with IC50 4.3 ± 0.11 µg/mL (0.013 µM). The highest selective index with respect to MCF-7 cells was shown by compound 3 (SI = 19.3), and to MDA-MB-231 cells by compound 2 (SI = 3.7). Based on energy analysis, the most stable conformers were selected and optimized by means of density functional theory (DFT). Ligand efficiency, ligand lipophilicity efficiency and the physicochemical parameters of the target 4-amino-thienopyrimidines were determined. The data obtained indicated that the lead compound among the tested substances is compound 2.
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3
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Wang T, Wu F, Luo L, Zhang Y, Ma J, Hu Y. Efficient synthesis and cytotoxic activity of polysubstituted thieno[2,3-d]pyrimidine derivatives. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.132497] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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4
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Lagardère P, Fersing C, Masurier N, Lisowski V. Thienopyrimidine: A Promising Scaffold to Access Anti-Infective Agents. Pharmaceuticals (Basel) 2021; 15:35. [PMID: 35056092 PMCID: PMC8780093 DOI: 10.3390/ph15010035] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2021] [Revised: 12/23/2021] [Accepted: 12/23/2021] [Indexed: 12/16/2022] Open
Abstract
Thienopyrimidines are widely represented in the literature, mainly due to their structural relationship with purine base such as adenine and guanine. This current review presents three isomers-thieno[2,3-d]pyrimidines, thieno[3,2-d]pyrimidines and thieno[3,4-d]pyrimidines-and their anti-infective properties. Broad-spectrum thienopyrimidines with biological properties such as antibacterial, antifungal, antiparasitic and antiviral inspired us to analyze and compile their structure-activity relationship (SAR) and classify their synthetic pathways. This review explains the main access route to synthesize thienopyrimidines from thiophene derivatives or from pyrimidine analogs. In addition, SAR study and promising anti-infective activity of these scaffolds are summarized in figures and explanatory diagrams. Ligand-receptor interactions were modeled when the biological target was identified and the crystal structure was solved.
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Affiliation(s)
- Prisca Lagardère
- IBMM, University of Montpellier, CNRS, ENSCM, 34293 Montpellier, France; (P.L.); (C.F.); (V.L.)
| | - Cyril Fersing
- IBMM, University of Montpellier, CNRS, ENSCM, 34293 Montpellier, France; (P.L.); (C.F.); (V.L.)
- Nuclear Medicine Department, Montpellier Cancer Institute (ICM), University of Montpellier, 208 Avenue des Apothicaires, CEDEX 5, 34298 Montpellier, France
| | - Nicolas Masurier
- IBMM, University of Montpellier, CNRS, ENSCM, 34293 Montpellier, France; (P.L.); (C.F.); (V.L.)
| | - Vincent Lisowski
- IBMM, University of Montpellier, CNRS, ENSCM, 34293 Montpellier, France; (P.L.); (C.F.); (V.L.)
- Department of Pharmacy, Lapeyronie Hospital, CHU Montpellier, 191 Av. du Doyen Gaston Giraud, 34295 Montpellier, France
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5
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Al-Ghorbani M, Gouda MA, Baashen M, Ranganatha V. L. Pyrimidine-Piperazine Hybrids; Recent Synthesis and Biological Activities. Polycycl Aromat Compd 2021. [DOI: 10.1080/10406638.2021.1998144] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- Mohammed Al-Ghorbani
- Department of Chemistry, Faculty of Science and Arts, Ulla, Taibah University, Medina, Saudi Arabia
- Department of Chemistry, Faculty of Education, Thamar University, Thamar, Yemen
| | - Moustafa A. Gouda
- Department of Chemistry, Faculty of Science and Arts, Ulla, Taibah University, Medina, Saudi Arabia
- Department of Chemistry, Faculty of Science, Mansoura University, Mansoura, Egypt
| | - Mohammed Baashen
- Department of Chemistry, Science and Humanities College, Shaqra University, Shaqraa, Saudi Arabia
| | - Lakshmi Ranganatha V.
- Department of Chemistry, The National Institute of Engineering, Mysore, Karnataka, India
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6
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García-Raso A, Terrón A, Fiol JJ, López-Zafra A, Massanet B, Frontera A, Barceló-Oliver M. Modified-amino acid/peptide pyrimidine analogs: synthesis, structural characterization and DFT studies of N-(pyrimidyl)gabapentine and N-(pyrimidyl)baclofen. NEW J CHEM 2021. [DOI: 10.1039/d1nj04639j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
H-Bonding networks and π–π and halogen bonding interactions in the crystal structures of N-modified amino acid pyrimidine analogs are investigated using DFT calculations and X-ray crystallography analysis.
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Affiliation(s)
- Angel García-Raso
- Departament de Química, Universitat de les Illes Balears, Crta. de Valldemossa km 7.5, 07122 Palma, Baleares, Spain
| | - Angel Terrón
- Departament de Química, Universitat de les Illes Balears, Crta. de Valldemossa km 7.5, 07122 Palma, Baleares, Spain
| | - Juan J. Fiol
- Departament de Química, Universitat de les Illes Balears, Crta. de Valldemossa km 7.5, 07122 Palma, Baleares, Spain
| | - Adela López-Zafra
- Departament de Química, Universitat de les Illes Balears, Crta. de Valldemossa km 7.5, 07122 Palma, Baleares, Spain
| | - Bárbara Massanet
- Departament de Química, Universitat de les Illes Balears, Crta. de Valldemossa km 7.5, 07122 Palma, Baleares, Spain
| | - Antonio Frontera
- Departament de Química, Universitat de les Illes Balears, Crta. de Valldemossa km 7.5, 07122 Palma, Baleares, Spain
| | - Miquel Barceló-Oliver
- Departament de Química, Universitat de les Illes Balears, Crta. de Valldemossa km 7.5, 07122 Palma, Baleares, Spain
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Deshmukh SU, Toche RB, Takate SJ, Salve SP, Sabnis RW. Synthesis of novel thiazol‐5‐ylpyrimidine derivatives and their antimicrobial evaluation. J Heterocycl Chem 2020. [DOI: 10.1002/jhet.4116] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Sanjay U. Deshmukh
- Department of Chemistry KRT Arts, BH Commerce & AM Science College Nashik India
| | - Raghunath B. Toche
- Department of Chemistry Dadasheb Bidkar Arts, Science & Commerce College Peth, Nashik‐422208 India
| | - Sushama J. Takate
- Department of Chemistry New Art, Commerce and Science College Ahmednagar India
| | - Supriya P. Salve
- Department of Chemistry New Art, Commerce and Science College Ahmednagar India
| | - Ram W. Sabnis
- Patent Law Department Georgia‐Pacific LLC Atlanta Georgia USA
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Saber AF, Sayed M, Tolba MS, Kamal El-Dean AM, Hassanien R, Ahmed M. A facile method for preparation and evaluation of the antimicrobial efficiency of various heterocycles containing thieno[2,3-d]pyrimidine. SYNTHETIC COMMUN 2020. [DOI: 10.1080/00397911.2020.1829645] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Ahmed F. Saber
- Chemistry Department, Faculty of Science, Assiut University, Assiut, Egypt
| | - Mostafa Sayed
- Chemistry Department, Faculty of Science, New Valley University, El-Kharja, Egypt
| | - Mahmoud S. Tolba
- Chemistry Department, Faculty of Science, New Valley University, El-Kharja, Egypt
| | | | - Reda Hassanien
- Chemistry Department, Faculty of Science, New Valley University, El-Kharja, Egypt
| | - Mostafa Ahmed
- Chemistry Department, Faculty of Science, New Valley University, El-Kharja, Egypt
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9
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U. Deshmukh S, B. Toche R, W. Sabnis R, J. Takate S, P. Salve S. Synthesis of Novel (Thiazol-5-yl)pyrazoles and Their Antimicrobial Evaluation. HETEROCYCLES 2020. [DOI: 10.3987/com-20-14316] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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10
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Inoue MH, Nunes FS. Redox- and thermally-induced linkage isomerization of thieno[2,3-d]pyrimidin-4-one pentacyanoferrate(II/III) complexes. Inorganica Chim Acta 2019. [DOI: 10.1016/j.ica.2019.02.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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11
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Settypalli T, Chunduri VR, Kerru N, Nallapaneni HK, Chintha VR, Daggupati T, Yeguvapalli S, Wudayagiri R. Design, Synthesis, Neuroprotective and Antibacterial Activities of 1,2,4‐Triazolo[3,4‐b]1,3,4‐thiadiazole Linked Thieno[2,3‐d]pyrimidine Derivatives and In Silico Docking Studies. ChemistrySelect 2019. [DOI: 10.1002/slct.201803917] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
| | | | - Nagaraju Kerru
- Department of ChemistrySri Venkateswara University- Tirupati- 517502
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12
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Liu X, Song X, Liu Y, Xie M, Yu W, Yan S, Lin J, Jin Y. Novel 5H-[1,2,4]oxadiazolo[4,5-a]pyrimidin-5-one derivatives as antibacterial and anticancer agents: Synthesis and biological evaluation. Tetrahedron Lett 2018. [DOI: 10.1016/j.tetlet.2018.09.011] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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13
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Triloknadh S, Venkata Rao C, Nagaraju K, Hari Krishna N, Venkata Ramaiah C, Rajendra W, Trinath D, Suneetha Y. Design, synthesis, neuroprotective, antibacterial activities and docking studies of novel thieno[2,3-d]pyrimidine-alkyne Mannich base and oxadiazole hybrids. Bioorg Med Chem Lett 2018; 28:1663-1669. [PMID: 29602681 DOI: 10.1016/j.bmcl.2018.03.030] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2017] [Revised: 03/05/2018] [Accepted: 03/12/2018] [Indexed: 01/07/2023]
Abstract
A series of thieno[2,3-d]pyrimidine alkyne Mannich base derivatives (7a-e, 8a-e) and thieno[2,3-d]pyrimidine 1,3,4-oxadiazole derivatives (9a-e, 10a-e) have been synthesized and evaluated for their neuroprotective and neurotoxicity activities where 9a, 10d displayed good neuroprotection 10.6 and 11.88 µg/mL respectively against the H2O2 induced cell death at the EC50 values and 9b, 9d showed respective toxic effects on PC12 cells at CC50 86.12 and 94.16 µg/mL. Compounds 9a, 9e, 10a and 10b showed strong antibacterial activity against two gram positive (S. aureus, B. subtilis) and two gram-negative strains (E. coli, P. aeruginosa) and showed good binding affinities with C(30) carotenoid dehydrosqualene synthase, Gyrase A and LpxC. This is the first report for the demonstration of thieno[2,3-d] pyrimidine derivatives as promising neuroprotective agents against H2O2 induced neurotoxicity on PC12 cells.
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Affiliation(s)
- Settypalli Triloknadh
- Department of Chemistry, Sri Venkateswara University, Tirupati 517502, Andhra Pradesh, India
| | - Chunduri Venkata Rao
- Department of Chemistry, Sri Venkateswara University, Tirupati 517502, Andhra Pradesh, India.
| | - Kerru Nagaraju
- Department of Chemistry, Sri Venkateswara University, Tirupati 517502, Andhra Pradesh, India
| | | | | | - Wudayagiri Rajendra
- Department of Zoology, Sri Venkateswara University, Tirupati 517502, Andhra Pradesh, India
| | - Daggupati Trinath
- Department of Zoology, Sri Venkateswara University, Tirupati 517502, Andhra Pradesh, India
| | - Yeguvapalli Suneetha
- Department of Zoology, Sri Venkateswara University, Tirupati 517502, Andhra Pradesh, India
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14
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Kumbhar D, Chandam D, Patil R, Jadhav S, Patil D, Patravale A, Deshmukh M. Synthesis and Antimicrobial Activity of Novel Derivatives of 7-aryl-10-thioxo-7, 10, 11, 12 - tertahydro-9H
-benzo[H
] pyrimido [4,5-b
] quinoline-8-one. J Heterocycl Chem 2018. [DOI: 10.1002/jhet.3089] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Digambar Kumbhar
- Department of Agrochemicals and Pest Management; Shivaji University; Kolhapur Maharashtra India
| | - Dattatray Chandam
- Department of Chemistry; Bhogawati Mahavidyalaya; Kurukali Kolhapur Maharashtra India
| | - Reshma Patil
- Department of Agrochemicals and Pest Management; Shivaji University; Kolhapur Maharashtra India
| | - Sunetra Jadhav
- Department of Agrochemicals and Pest Management; Shivaji University; Kolhapur Maharashtra India
| | - Dayanand Patil
- Department of Chemistry; Shivaji University; Kolhapur Maharashtra India
| | - Ajinkya Patravale
- Department of Chemistry; Shivaji University; Kolhapur Maharashtra India
| | - Madhukar Deshmukh
- Department of Agrochemicals and Pest Management; Shivaji University; Kolhapur Maharashtra India
- Department of Chemistry; Shivaji University; Kolhapur Maharashtra India
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Quadri SAI, Malik MS, Seddigi ZS, Farooqui M. Efficient Ferric Citrate-Catalyzed Synthesis of Novel Dihydropyrimidin-(1H)-ones Sulfonamide Conjugates and Their Evaluation as Potential Antimicrobials. ChemistrySelect 2017. [DOI: 10.1002/slct.201700291] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
| | | | - Zaki Shakir Seddigi
- Department of Environmental Health, College of Public Health and Health informatics; Umm Al-Qura University; 21955 Makkah Saudi Arabia
| | - Mazahar Farooqui
- Dr. Rafiq Zakaria College for women; Aurangabad (M.S) 431001 India
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16
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Gill RK, Singh H, Raj T, Sharma A, Singh G, Bariwal J. 4-Substituted thieno[2,3-d
]pyrimidines as potent antibacterial agents: Rational design, microwave-assisted synthesis, biological evaluation and molecular docking studies. Chem Biol Drug Des 2017; 90:1115-1121. [DOI: 10.1111/cbdd.13028] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2016] [Revised: 04/27/2017] [Accepted: 05/01/2017] [Indexed: 01/24/2023]
Affiliation(s)
- Rupinder K. Gill
- Department of Pharmaceutical Chemistry; ISF College of Pharmacy; Moga Punjab India
- I. K. Gujral Punjab Technical University; Kapurthala, Jalandhar Punjab India
| | - Harpreet Singh
- Department of Chemistry; Guru Nanak Dev University; Amritsar India
| | - Tilak Raj
- Toxicology Division; Forensic Science Laboratory, Phase-IV; Mohali Punjab India
| | - Anuradha Sharma
- University Institute of Pharmaceutical Sciences; Panjab University; Chandigarh India
| | - Gagandeep Singh
- Bioorganic and Photochemistry Laboratory; Department of Pharmaceutical Sciences; Guru Nanak Dev University; Amritsar Punjab India
| | - Jitender Bariwal
- Department of Pharmaceutical Chemistry; ISF College of Pharmacy; Moga Punjab India
- Shiva Institute of B. Pharmacy; Chandpur, Bilaspur Himachal Pradesh India
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17
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Wilding B, Klempier N. Newest Developments in the Preparation of Thieno[2,3-d]pyrimidines. ORG PREP PROCED INT 2017. [DOI: 10.1080/00304948.2017.1320513] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Affiliation(s)
- B. Wilding
- Institute of Organic Chemistry, Graz University of Technology, Stremayrgasse 9, 8010 Graz, Austria
| | - N. Klempier
- Institute of Organic Chemistry, Graz University of Technology, Stremayrgasse 9, 8010 Graz, Austria
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19
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Soares MI, de Lyra AC, Henriques MS, Paixão JA, Pinho e Melo TM. Thermolysis of 1-(thiophen-2-yl)-1H-tetrazoles: a route to thiophene-fused imidazoles and pyrimidines. Tetrahedron 2015. [DOI: 10.1016/j.tet.2015.03.102] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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20
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Improved and Scalable Preparation of 6-Bromo-4-Chlorothieno[2,3-d]Pyrimidine. Chem Heterocycl Compd (N Y) 2014. [DOI: 10.1007/s10593-014-1579-z] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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21
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Bozorov K, Ma HR, Zhao JY, Zhao HQ, Chen H, Bobakulov K, Xin XL, Elmuradov B, Shakhidoyatov K, Aisa HA. Discovery of diethyl 2,5-diaminothiophene-3,4-dicarboxylate derivatives as potent anticancer and antimicrobial agents and screening of anti-diabetic activity: Synthesis and in vitro biological evaluation. Part 1. Eur J Med Chem 2014; 84:739-45. [DOI: 10.1016/j.ejmech.2014.07.065] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2014] [Revised: 07/18/2014] [Accepted: 07/19/2014] [Indexed: 11/29/2022]
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22
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Raj T, Singh N, Ishar M. Unusual transformation of substituted-3-formylchromones to pyrimidine analogues: Synthesis and antimicrobial activities of 5-(o-hydroxyaroyl)pyrimidines. Bioorg Med Chem Lett 2013; 23:6093-6. [DOI: 10.1016/j.bmcl.2013.09.024] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2013] [Revised: 09/04/2013] [Accepted: 09/07/2013] [Indexed: 11/27/2022]
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