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First report on an X-linked hypohidrotic ectodermal dysplasia family with X chromosome inversion: Breakpoint mapping reveals the pathogenic mechanism and preimplantation genetics diagnosis achieves an unaffected birth. Clin Chim Acta 2017; 475:78-84. [PMID: 29037841 DOI: 10.1016/j.cca.2017.10.010] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2017] [Revised: 10/05/2017] [Accepted: 10/13/2017] [Indexed: 12/31/2022]
Abstract
BACKGROUND To investigate the etiology of X-linked hypohidrotic ectodermal dysplasia (XLHED) in a family with an inversion of the X chromosome [inv(X)(p21q13)] and to achieve a healthy birth following preimplantation genetic diagnosis (PGD). METHODS Next generation sequencing (NGS) and Sanger sequencing analysis were carried out to define the inversion breakpoint. Multiple displacement amplification, amplification of breakpoint junction fragments, Sanger sequencing of exon 1 of ED1, haplotyping of informative short tandem repeat markers and gender determination were performed for PGD. RESULTS NGS data of the proband sample revealed that the size of the possible inverted fragment was over 42Mb, spanning from position 26, 814, 206 to position 69, 231, 915 on the X chromosome. The breakpoints were confirmed by Sanger sequencing. A total of 5 blastocyst embryos underwent trophectoderm biopsy. Two embryos were diagnosed as carriers and three were unaffected. Two unaffected blastocysts were transferred and a singleton pregnancy was achieved. Following confirmation by prenatal diagnosis, a healthy baby was delivered. CONCLUSIONS This is the first report of an XLHED family with inv(X). ED1 is disrupted by the X chromosome inversion in this XLHED family and embryos with the X chromosomal abnormality can be accurately identified by means of PGD.
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Milachich T, Shterev A. Are there optimal numbers of oocytes, spermatozoa and embryos in assisted reproduction? JBRA Assist Reprod 2016; 20:142-9. [PMID: 27584608 PMCID: PMC5264380 DOI: 10.5935/1518-0557.20160032] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
The aim of this overview is to discuss the current information about the search for the optimum yield of gametes in assisted reproduction, as one of the major pillars of IVF success. The first topic is focused on the number of male gametes and the possible impact of some genetic traits on these parameters. The number of spermatozoa did not seem to be crucial when there is no severe male factor of infertility. Genetic testing prior to using those sperm cells is very important. Different methods were applied in order to elect the "best" spermatozoa according to specific indications. The next problem discussed is the importance of the number of oocytes collected. Several studies have agreed that "15 oocytes is the perfect number," as the number of mature oocytes is more important. However, if elective single embryo transfer is performed, the optimal number of oocytes will enable a proper embryo selection. The third problem discussed concerns fertility preservation. Many educational programs promote and encourage procreation at maternal ages between 20-35 years, since assisted reproduction is unable to fully overcome the effects of female aging and fertility loss after that age. It is also strongly recommended to ensure a reasonable number of cryopreserved mature oocytes, preferably in younger ages (<35), for which an average of two stimulation cycles are likely required. For embryo cryopreservation, the "freeze all" strategy suggests the vitrification of good embryos, therefore quality is prior to number and patient recruitment for this strategy should be performed cautiously.
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Chen M, Tan ASC, Cheah FSH, Saw EEL, Chong SS. Identification of novel microsatellite markers <1 Mb from theHBBgene and development of a single-tube pentadecaplex PCR panel of highly polymorphic markers for preimplantation genetic diagnosis of beta-thalassemia. Electrophoresis 2015; 36:2914-24. [DOI: 10.1002/elps.201500146] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2015] [Revised: 07/20/2015] [Accepted: 08/17/2015] [Indexed: 02/05/2023]
Affiliation(s)
- Min Chen
- Department of Pediatrics, Yong Loo Lin School of Medicine; National University of Singapore; Singapore
| | - Arnold S. C. Tan
- Department of Pediatrics, Yong Loo Lin School of Medicine; National University of Singapore; Singapore
- Preimplantation Genetic Diagnosis Center, Khoo Teck Puat - National University Children's Medical Institute; National University Health System; Singapore
| | - Felicia S. H. Cheah
- Preimplantation Genetic Diagnosis Center, Khoo Teck Puat - National University Children's Medical Institute; National University Health System; Singapore
| | - Eugene E. L. Saw
- Preimplantation Genetic Diagnosis Center, Khoo Teck Puat - National University Children's Medical Institute; National University Health System; Singapore
| | - Samuel S. Chong
- Department of Pediatrics, Yong Loo Lin School of Medicine; National University of Singapore; Singapore
- Department of Laboratory Medicine; National University Hospital; Singapore
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Xu Y, Chen S, Yin X, Shen X, Pan X, Chen F, Jiang H, Liang Y, Wang W, Xu X, Wang J, Zhang X, Zhou C, Wang J. Embryo Genome Profiling by Single-Cell Sequencing for Preimplantation Genetic Diagnosis in a β-Thalassemia Family. Clin Chem 2015; 61:617-26. [DOI: 10.1373/clinchem.2014.228569] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Abstract
BACKGROUND
The embryonic genome, including genotypes and haplotypes, contains all the information for preimplantation genetic diagnosis, representing great potential for mendelian disorder carriers to conceive healthy babies.
METHODS
We developed a strategy to obtain the full embryonic genome for a β-thalassemia–carrier couple to have a healthy second baby. We carried out sequencing for single blastomere cells and the family trio and further developed the analysis pipeline, including recovery of the missing alleles, removal of the majority of errors, and phasing of the embryonic genome.
RESULTS
The final accuracy for homozygous and heterozygous single-nucleotide polymorphisms reached 99.62% and 98.39%, respectively. The aneuploidies of embryos were detected as well. Based on the comprehensive embryonic genome, we effectively performed whole-genome mendelian disorder diagnosis and human leukocyte antigen matching tests.
CONCLUSIONS
This retrospective study in a β-thalassemia family demonstrates a method for embryo genome recovery through single-cell sequencing, which permits detection of genetic variations in preimplantation genetic diagnosis. It shows the potential of single-cell sequencing technology in preimplantation genetic diagnosis clinical practices.
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Affiliation(s)
- Yanwen Xu
- First Affiliated Hospital of Sun Yat-sen University, Guangzhou, China
- Guangdong Provincial Key Laboratory of Reproductive Medicine, Guangdong, China
| | - Shengpei Chen
- BGI-Shenzhen, Shenzhen, China
- Shenzhen Municipal Key Laboratory of Birth Defects Screening and Engineering, Shenzhen, China
- Guangdong Provincial Key Laboratory of Human Diseases Genome, Guangdong, China
- State Key Laboratory of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing, China
| | - Xuyang Yin
- BGI-Shenzhen, Shenzhen, China
- Shenzhen Municipal Key Laboratory of Birth Defects Screening and Engineering, Shenzhen, China
- Guangdong Provincial Key Laboratory of Human Diseases Genome, Guangdong, China
| | - Xiaoting Shen
- First Affiliated Hospital of Sun Yat-sen University, Guangzhou, China
- Guangdong Provincial Key Laboratory of Reproductive Medicine, Guangdong, China
| | - Xiaoyu Pan
- BGI-Shenzhen, Shenzhen, China
- Shenzhen Municipal Key Laboratory of Birth Defects Screening and Engineering, Shenzhen, China
- Guangdong Provincial Key Laboratory of Human Diseases Genome, Guangdong, China
- School of Bioscience and Bioengineering, South China University of Technology, Guangzhou, China
| | - Fang Chen
- BGI-Shenzhen, Shenzhen, China
- Shenzhen Municipal Key Laboratory of Birth Defects Screening and Engineering, Shenzhen, China
- Guangdong Provincial Key Laboratory of Human Diseases Genome, Guangdong, China
- Section of Molecular Disease Biology, Department of Veterinary Disease Biology, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark
| | - Hui Jiang
- BGI-Shenzhen, Shenzhen, China
- Shenzhen Municipal Key Laboratory of Birth Defects Screening and Engineering, Shenzhen, China
- Guangdong Provincial Key Laboratory of Human Diseases Genome, Guangdong, China
- Department of Biology, University of Copenhagen, Copenhagen, Denmark
| | | | - Wei Wang
- BGI-Shenzhen, Shenzhen, China
- Shenzhen Municipal Key Laboratory of Birth Defects Screening and Engineering, Shenzhen, China
| | - Xun Xu
- BGI-Shenzhen, Shenzhen, China
| | | | - Xiuqing Zhang
- BGI-Shenzhen, Shenzhen, China
- Guangdong Provincial Key Laboratory of Human Diseases Genome, Guangdong, China
| | - Canquan Zhou
- First Affiliated Hospital of Sun Yat-sen University, Guangzhou, China
- Guangdong Provincial Key Laboratory of Reproductive Medicine, Guangdong, China
| | - Jun Wang
- BGI-Shenzhen, Shenzhen, China
- Department of Biology, University of Copenhagen, Copenhagen, Denmark
- King Abdulaziz University, Jeddah, Saudi Arabia
- The Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen
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Kahraman S, Beyazyurek C, Yesilipek MA, Ozturk G, Ertem M, Anak S, Kansoy S, Aksoylar S, Kuşkonmaz B, Oniz H, Slavin S, Karakas Z, Tac HA, Gulum N, Ekmekci GC. Successful haematopoietic stem cell transplantation in 44 children from healthy siblings conceived after preimplantation HLA matching. Reprod Biomed Online 2014; 29:340-51. [PMID: 25066893 DOI: 10.1016/j.rbmo.2014.05.010] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2013] [Revised: 05/10/2014] [Accepted: 05/22/2014] [Indexed: 11/27/2022]
Abstract
Haematopoietic stem cell transplantation (HSCT) remains the best therapeutic option for many acquired and inherited paediatric haematological disorders. Unfortunately, the probability of finding an HLA matched donor is limited. An alternative technique is PGD combined with HLA matching, which offers the possibility of selecting unaffected embryos that are HLA compatible with the sick child, with the aim of possible use of stem cells from the resulting baby in future. Since the first successful report for Fanconi anaemia a decade ago, the therapeutic success of this technique was reported in a few cases and for a limited number of disorders. Here, we report full recovery of 44 sick children who received HSCT from healthy infants conceived after pre-implantation HLA matching for the following 10 indications; beta-thalassaemia, Wiskott-Aldrich syndrome, Fanconi anaemia, sickle cell anaemia, acute myeloid leukaemia, acute lymphoblastic leukaemia, Glanzmann's thrombasthaenia, Diamond-Blackfan anaemia, X-linked adrenoleukodystrophy and mucopolysaccharidosis type I. No serious complications were observed among recipients and donors. Graft failure occurred in four children with beta-thalassaemia where a second HSCT was planned. Preimplantation HLA matching is a reliable technique and provides a realistic option for couples seeking treatment for an affected child when no HLA-matched donor is available.
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Affiliation(s)
- Semra Kahraman
- ART and Reproductive Genetics Center, Istanbul Memorial Hospital, Istanbul, Turkey
| | - Cagri Beyazyurek
- ART and Reproductive Genetics Center, Istanbul Memorial Hospital, Istanbul, Turkey.
| | - Mehmet Akif Yesilipek
- School of Medicine, Pediatric Hematology and Oncology, Akdeniz University, Antalya, Turkey
| | - Gulyuz Ozturk
- Faculty of Medicine, Pediatric Hematology and Oncology, Istanbul University, Istanbul, Turkey
| | - Mehmet Ertem
- Faculty of Medicine, Pediatric Hematology and Oncology, Ankara University, Istanbul, Turkey
| | - Sema Anak
- Faculty of Medicine, Pediatric Hematology and Oncology, Istanbul University, Istanbul, Turkey
| | - Savas Kansoy
- Faculty of Medicine, Pediatric Hematology and Oncology, Ege University, Izmir, Turkey
| | - Serap Aksoylar
- Faculty of Medicine, Pediatric Hematology and Oncology, Ege University, Izmir, Turkey
| | - Barış Kuşkonmaz
- Faculty of Medicine, Pediatric Bone Marrow Transplantation Unit, Hacettepe University, Ankara, Turkey
| | - Haldun Oniz
- Pediatric Hematology and Oncology, Izmir Tepecik Hospital, Izmir, Turkey
| | - Shimon Slavin
- Scientific and Medical Director, The International Center for Cell Therapy and Cancer Immunotherapy (CTCI), Tel Aviv, Israel
| | - Zeynep Karakas
- Faculty of Medicine, Pediatric Hematology and Oncology, Istanbul University, Istanbul, Turkey
| | - Huseyin Avni Tac
- ART and Reproductive Genetics Center, Istanbul Memorial Hospital, Istanbul, Turkey
| | - Nese Gulum
- ART and Reproductive Genetics Center, Istanbul Memorial Hospital, Istanbul, Turkey
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Couture V, Drouin R, Tan SL, Moutquin JM, Bouffard C. Cross-border reprogenetic services. Clin Genet 2014; 87:1-10. [PMID: 24798608 DOI: 10.1111/cge.12418] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2014] [Revised: 04/27/2014] [Accepted: 04/29/2014] [Indexed: 12/19/2022]
Abstract
The purpose of this review is to synthesize the current knowledge on the international movement of patients and biopsied embryo cells for pre-implantation genetic diagnosis and its different applications. Thus far, few attempts have been made to identify the specific nature of this phenomenon called 'cross-border reprogenetic services'. There is scattered evidence, both empirical and speculative, suggesting that these services raise major issues in terms of service provision, risks for patients and the children-to-come, the legal liabilities of physicians, as well as social justice. To compile this evidence, this review uses the narrative overview protocol combined with thematic analysis. Five major themes have emerged from the literature at the conjunction of cross-border treatments and reprogenetics: 'scope', 'scale', 'motivations', 'concerns', and 'governance'. Similar themes have already been observed in the case of other medical tourism activities, but this review highlights their singularity with reprogenetic services. It emphasizes the diagnostic and autologous feature of reprogenetics, the constant risk of misdiagnosis, the restriction on certain tests for medically controversial conditions, and the uncertain accessibility of genetic counseling in cross-border settings.
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Affiliation(s)
- V Couture
- Laboratory of Transdisciplinary Research in Genetics, Medicines and Social Sciences, Division of Genetics, Department of Pediatrics, Faculty of Medicine and Health Sciences, Université de Sherbrooke, Sherbrooke, Quebec, Canada
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Experience of preimplantation genetic diagnosis with HLA matching at the University Hospital Virgen del Rocío in Spain: technical and clinical overview. BIOMED RESEARCH INTERNATIONAL 2014; 2014:560160. [PMID: 24868528 PMCID: PMC4017834 DOI: 10.1155/2014/560160] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 12/16/2013] [Revised: 03/27/2014] [Accepted: 03/31/2014] [Indexed: 11/18/2022]
Abstract
Preimplantation genetic diagnosis (PGD) of genetic diseases, combined with HLA matching (PGD-HLA), is an option for couples at risk of transmitting a genetic disease to select unaffected embryos of an HLA tissue type compatible with that of an existing affected child. Here we present the results of our PGD-HLA program at the Department of Genetics, Reproduction and Fetal Medicine of the University Hospital Virgen del Rocío in Seville. Seven couples have participated in our program because of different indications. Overall, 26 cycles were performed, providing a total of 202 embryos. A conclusive molecular diagnosis and HLA-typing could be assured in 96% of the embryos. The percentage of transfers per cycle was 26.9% and the birth rate per cycle was 7.7% per transfer. Our PGD-HLA program resulted in the birth of 2 healthy babies, HLA-identical to their affected siblings, with successful subsequent haematopoietic stem cell (HSC) transplantations. Both HSC-transplanted children are currently doing well 48 and 21 months following transplantation, respectively. All the procedures, including HSCs umbilical cord transplantation, were performed in our hospital.
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