The testate amoebae of New Zealand: A checklist, identification key and assessment of biogeographic patterns

Testate amoebae from the wetlands of the Phobjikha Valley of Bhutan, the Eastern Himalayas

The Kingdom of Bhutan in the Eastern Himalayas harbors a rich biodiversity. However, its detailed documentation still needs to be created, including not only macroorganisms but also protists. In the present study, as many as 105 taxa of testate amoebae were identified and directly counted in soil suspension samples collected from the wetlands of the Gangtey-Phobji Valley (generally Phobjikha), Wangdue Phodrang district. The most dominant were cosmopolitan species, e.g., Euglypha rotunda, Trinema lineare, T. complanatum, T. enchelys, Phryganella acropodia, and Plagiopyxis declivis. However, some taxa such as Centropyxis deflandriana, C. stenodeflandriana, Hoogenraadia cf. humicola, Pareuglypha reticulata, and Sphenoderia chardezi have a geographically restricted distribution and/or are considered rare. Some specimens could not be assigned to already described species (Centropyxis dentata sp. nov. and Difflugia fusiforma sp. nov.) or were highly similar to known species but differed in size or other taxonomically important characteristics (e.g., Hoogenraadia cf. humicola and Planhoogenraadia sp.). To our knowledge, this study is the first to present a comprehensive list of testate amoebae from Bhutan, including some new and rare species. The discovery of a remarkable diversity of testate amoebae in only a few soil samples suggests that this remote and largely unexplored region likely harbors many more intriguing species.

Biomonitoring tool for New Zealand peatlands: Testate amoebae and vascular plants as promising bioindicators

In the last two centuries, a high proportion of peatlands have been lost or severely degraded across the world. The value of peatlands is now well-recognised for biodiversity conservation, flood management, and carbon mitigation, with peatland restoration now central to many government policies for climate action. A challenge, however, is to determine 'natural' and 'disturbed' conditions of peatlands to establish realistic baselines for assessing degradation and setting restoration targets. This requires a tool or set of tools that can rapidly and reliably capture peatland condition across space and time. Our aim was to develop such a tool based on combined analysis of plant and testate amoebae; a group of shelled protists commonly used as indicators of ecological change in peatlands. The value of testate amoebae is well established in Northern Hemisphere Sphagnum-dominated peatlands; however, relatively little work has been undertaken for Southern Hemisphere peat forming systems. Here we provide the first assessment and comparison of the bioindicator value of testate amoebae and vascular plants in the context of Southern Hemisphere peatlands. Our results further demonstrate the unique ecohydrological dynamics at play in New Zealand peat forming systems that set them apart from Northern Hemisphere peatlands. Our results show that plant and testate amoeba communities provided valuable information on peatland condition at different scales, we found that testate amoebae tracked changes in the abiotic variables (depth to water table, pH, and conductivity) more closely than vascular plants. Our results further demonstrate that functional traits of testate amoebae showed promising relationships with disturbance. Amoeba test compression, aperture position and test size were linked to changes in hydrology driven by fluctuations in ground water tables; however, trait responses manifested differently in ombrotrophic and minerotrophic peatlands. Overall, testate amoebae provide a promising bioindicator for tracking degradation in New Zealand peatlands and a potential additional tool to assess peatland condition.

Certesella larai (Amoebozoa: Arcellinida: Hyalospheniformes) a new soil testate amoeba species from the Dominican Republic and Chile challenges the definition of genera Certesella and Porosia

Microbial diversity is known to be huge but remains only partly documented. Testate amoebae are a relatively well studied group or free-living protists that build morphologically characteristic shells on which the taxonomy of this group is mainly based. Among testate amoebae, the Hyalospheniformes are especially well documented and are a model group for microbial biogeography. Here we describe a new species of genus Certesella from Sphagnum mosses and forest litter samples collected in the Dominican Republic and Chile. We name this species Certesella larai to honour our esteemed colleague Enrique Lara. This species bears two large pores connected by tube, which are characteristic of the genera Porosia and Certesella. The new species fits best in the latter genus given the presence of a distinct, sometimes denticulated, neck with a bulge that is absent in genus Porosia but occurs in Certesella. Its elongated shape (length/breadth ratio 2.03–2.58) only overlaps with C. certesi, which is distinguishable by the presence of a distinct longitudinal groove in the neck region that is absent from the new species. Interestingly most specimens lacked the internal teeth which are usually present in members of genus Certesella. As such, while the morphology of C. larai strongly suggests a belonging to genus Certesella, molecular analyses are still required to confirm its phylogenetic position, clarify the relationships among all species in genera Porosia and Certesella and the definition and validity of these two genera. The presence of this new species in two rather distant regions – Caribbean and central Chile – suggests it is likely widespread, but possibly rare. However, this perception may be due to a sampling bias in favour of Sphagnum mosses and wet and organic-rich habitats. This illustrates the need for a more systematic sampling effort to document the full and mostly unknown taxonomic diversity of soil protists.

Superficially described and ignored for 92 years, rediscovered and emended: Apodera angatakere (Amoebozoa: Arcellinida: Hyalospheniformes) is a new flagship testate amoeba taxon from Aotearoa (New Zealand)

Eukaryotic microbial diversity is known to be extensive but remains largely undescribed and uncharted. While much of this unknown diversity is composed of inconspicuous flagellates and parasites, larger and morphologically distinct protists are regularly discovered, most notably from poorly studied regions. Here we report a new flagship species of hyalospheniid (Amoebozoa; Arcellinida; Hyalospheniformes) testate amoeba from New Zealand and an unusual story of overlooked description under a preoccupied name and subsequent oversight for nearly one century. Through a process involving The Māori Language Commission, we named the species Apodera angatakere, meaning "a shell with a keel." This species resembles Apodera vas but differs by the presence of a distinctive hollow keel. Cytochrome Oxidase Subunit 1 (COI) sequence data show that this species forms a distinct clade nested within genus Apodera. This conspicuous species is so far known only from New Zealand and is restricted to peatlands. It is one of the few examples of endemic microorganisms from this biodiversity hotspot and biogeographer's paradise. As over 90% of New Zealand's peatlands have been lost since European colonization and much of the remaining surfaces are threatened, Apodera angatakere could be a flagship species not only for microbial biogeography but also for island biodiversity conservation.

A reassessment of testate amoebae diversity in Tierra del Fuego peatlands: Implications for large scale inferences

Testate amoebae are a diverse group of shelled protists frequently used as model organisms in microbial biogeography. Relatively few species have been reported for the Southern Hemisphere, however, it remains unclear whether this lower diversity is real or an artifact of under-sampling or misidentifications, which would reduce their potential to address macroecological questions. We evaluated testate amoebae diversity from the full range of habitats occurring within two Tierra del Fuego peatlands and compared it with the reported diversity for the area and from the Northern Hemisphere peatlands. We recorded 87 species, of which 69 are new for the region and 45 of them probably new to science and likely to have restricted geographical distributions. Combined with previous studies, the total diversity of testate amoebae only from Tierra del Fuego peatlands now reaches 119, as compared with 183 reported from all Northern Hemisphere peatlands. Our results demonstrate that the number of Gondwanian and Neotropical endemic testate amoeba may be substantially higher than currently known. Previous reports of Holarctic taxa in Tierra del Fuego may result from forcing the identification of morphotypes to the descriptions in the most common literature (force-fitting) South American species into species common in literature from other regions.