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Ding Y, Xue X. Medicinal Chemistry Strategies for the Modification of Bioactive Natural Products. Molecules 2024; 29:689. [PMID: 38338433 PMCID: PMC10856770 DOI: 10.3390/molecules29030689] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2023] [Revised: 01/17/2024] [Accepted: 01/27/2024] [Indexed: 02/12/2024] Open
Abstract
Natural bioactive compounds are valuable resources for drug discovery due to their diverse and unique structures. However, these compounds often lack optimal drug-like properties. Therefore, structural optimization is a crucial step in the drug development process. By employing medicinal chemistry principles, targeted molecular operations can be applied to natural products while considering their size and complexity. Various strategies, including structural fragmentation, elimination of redundant atoms or groups, and exploration of structure-activity relationships, are utilized. Furthermore, improvements in physicochemical properties, chemical and metabolic stability, biophysical properties, and pharmacokinetic properties are sought after. This article provides a concise analysis of the process of modifying a few marketed drugs as illustrative examples.
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Affiliation(s)
- Yuyang Ding
- Shenzhen Borui Pharmaceutical Technology Co., Ltd., Shenzhen 518055, China;
| | - Xiaoqian Xue
- Medi-X Pingshan, Southern University of Science and Technology, Shenzhen 518055, China
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Oranje P, Gouka R, Burggraaff L, Vermeer M, Chalet C, Duchateau G, van der Pijl P, Geldof M, de Roo N, Clauwaert F, Vanpaeschen T, Nicolaï J, de Bruyn T, Annaert P, IJzerman AP, van Westen GJP. Novel natural and synthetic inhibitors of solute carriers SGLT1 and SGLT2. Pharmacol Res Perspect 2019; 7:e00504. [PMID: 31384471 PMCID: PMC6664820 DOI: 10.1002/prp2.504] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2019] [Revised: 06/05/2019] [Accepted: 06/06/2019] [Indexed: 12/12/2022] Open
Abstract
Selective analogs of the natural glycoside phloridzin are marketed drugs that reduce hyperglycemia in diabetes by inhibiting the active sodium glucose cotransporter SGLT2 in the kidneys. In addition, intestinal SGLT1 is now recognized as a target for glycemic control. To expand available type 2 diabetes remedies, we aimed to find novel SGLT1 inhibitors beyond the chemical space of glycosides. We screened a bioactive compound library for SGLT1 inhibitors and tested primary hits and additional structurally similar molecules on SGLT1 and SGLT2 (SGLT1/2). Novel SGLT1/2 inhibitors were discovered in separate chemical clusters of natural and synthetic compounds. These have IC50-values in the 10-100 μmol/L range. The most potent identified novel inhibitors from different chemical clusters are (SGLT1-IC50 Mean ± SD, SGLT2-IC50 Mean ± SD): (+)-pteryxin (12 ± 2 μmol/L, 9 ± 4 μmol/L), (+)-ε-viniferin (58 ± 18 μmol/L, 110 μmol/L), quinidine (62 μmol/L, 56 μmol/L), cloperastine (9 ± 3 μmol/L, 9 ± 7 μmol/L), bepridil (10 ± 5 μmol/L, 14 ± 12 μmol/L), trihexyphenidyl (12 ± 1 μmol/L, 20 ± 13 μmol/L) and bupivacaine (23 ± 14 μmol/L, 43 ± 29 μmol/L). The discovered natural inhibitors may be further investigated as new potential (prophylactic) agents for controlling dietary glucose uptake. The new diverse structure activity data can provide a starting point for the optimization of novel SGLT1/2 inhibitors and support the development of virtual SGLT1/2 inhibitor screening models.
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Affiliation(s)
- Paul Oranje
- Unilever Research & DevelopmentVlaardingenThe Netherlands
| | - Robin Gouka
- Unilever Research & DevelopmentVlaardingenThe Netherlands
| | - Lindsey Burggraaff
- Division of Drug Discovery & Safety, Leiden Academic Centre for Drug ResearchLeiden UniversityLeidenThe Netherlands
| | - Mario Vermeer
- Unilever Research & DevelopmentVlaardingenThe Netherlands
| | - Clément Chalet
- Unilever Research & DevelopmentVlaardingenThe Netherlands
| | - Guus Duchateau
- Unilever Research & DevelopmentVlaardingenThe Netherlands
| | | | - Marian Geldof
- Unilever Research & DevelopmentVlaardingenThe Netherlands
| | - Niels de Roo
- Unilever Research & DevelopmentVlaardingenThe Netherlands
| | - Fenja Clauwaert
- Drug Delivery and Disposition, Department of Pharmaceutical and Pharmacological SciencesKU LeuvenLeuvenBelgium
| | - Toon Vanpaeschen
- Drug Delivery and Disposition, Department of Pharmaceutical and Pharmacological SciencesKU LeuvenLeuvenBelgium
| | - Johan Nicolaï
- Drug Delivery and Disposition, Department of Pharmaceutical and Pharmacological SciencesKU LeuvenLeuvenBelgium
| | - Tom de Bruyn
- Drug Delivery and Disposition, Department of Pharmaceutical and Pharmacological SciencesKU LeuvenLeuvenBelgium
| | - Pieter Annaert
- Drug Delivery and Disposition, Department of Pharmaceutical and Pharmacological SciencesKU LeuvenLeuvenBelgium
| | - Adriaan P. IJzerman
- Division of Drug Discovery & Safety, Leiden Academic Centre for Drug ResearchLeiden UniversityLeidenThe Netherlands
| | - Gerard J. P. van Westen
- Division of Drug Discovery & Safety, Leiden Academic Centre for Drug ResearchLeiden UniversityLeidenThe Netherlands
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Lu YT, Ma XL, Xu YH, Hu J, Wang F, Qin WY, Xiong WY. A Fluorescent Glucose Transport Assay for Screening SGLT2 Inhibitors in Endogenous SGLT2-Expressing HK-2 Cells. NATURAL PRODUCTS AND BIOPROSPECTING 2019; 9:13-21. [PMID: 30387082 PMCID: PMC6328422 DOI: 10.1007/s13659-018-0188-4] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2018] [Accepted: 10/18/2018] [Indexed: 05/02/2023]
Abstract
The sodium-dependent glucose transporters 2 (SGLT2) plays important role in renal reabsorption of urinal glucose back to plasma for maintaining glucose homeostasis. The approval of SGLT2 inhibitors for treatment of type 2 diabetes highlights the SGLT2 as a feasible and promising drug target in recent years. Current methods for screening SGLT2 inhibitors are complex, expensive and labor intensive. Particularly, these methods cannot directly measure nonradioactive glucose uptake in endogenous SGLT2-expressing kidney cells. In present work, human kidney cells, HK-2, was incubated with a fluorescent D-glucose derivant 2-[N-(7-nitrobenz-2-oxa-1,3-diazol-4-yl) amino]-2-deoxy-D-glucose (2-NBDG) and the fluorescent intensity of 2-NBDG was employed to measure the amount of glucose uptake into the cells. By optimizing the passages of HK-2 cells, 2-NBDG concentration and incubation time, and by measuring glucose uptake treated by Dapagliflozin, a clinical drug of SGLT2 inhibitors, we successfully developed a new assay for measuring glucose uptake through SGLT2. The nonradioactive microplate and microscope-based high-throughput screening assay for measuring glucose can be a new method for screening of SGLT2 inhibitors and implied for other cell assays for glucose measurement extensively.
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Affiliation(s)
- Yan-Ting Lu
- State Key Laboratory of Phytochemistry and Plant Resources in West China, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
- University of the Chinese Academy of Sciences, Beijing, 100049, China
| | - Xiu-Li Ma
- State Key Laboratory of Phytochemistry and Plant Resources in West China, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
- University of the Chinese Academy of Sciences, Beijing, 100049, China
| | - Yu-Hui Xu
- State Key Laboratory of Phytochemistry and Plant Resources in West China, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
| | - Jing Hu
- State Key Laboratory of Phytochemistry and Plant Resources in West China, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
- University of the Chinese Academy of Sciences, Beijing, 100049, China
| | - Fang Wang
- State Key Laboratory of Phytochemistry and Plant Resources in West China, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
- University of the Chinese Academy of Sciences, Beijing, 100049, China
| | - Wan-Ying Qin
- State Key Laboratory of Phytochemistry and Plant Resources in West China, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
- University of the Chinese Academy of Sciences, Beijing, 100049, China
| | - Wen-Yong Xiong
- State Key Laboratory of Phytochemistry and Plant Resources in West China, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China.
- Yunnan Key Laboratory of Natural Medicinal Chemistry, Kunming, 650201, China.
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Ortega-Muñoz M, Rodríguez-Serrano F, De los Reyes-Berbel E, Mut-Salud N, Hernández-Mateo F, Rodríguez-López A, Garrido JM, López-Jaramillo FJ, Santoyo-González F. Biological Evaluation and Docking Studies of Synthetic Oleanane-type Triterpenoids. ACS OMEGA 2018; 3:11455-11468. [PMID: 30320262 PMCID: PMC6173505 DOI: 10.1021/acsomega.8b01034] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/18/2018] [Accepted: 07/12/2018] [Indexed: 06/08/2023]
Abstract
Saponins are potential wide-spectrum antitumor drugs, and copper(I) catalyzed azide-alkyne 1,3-dipolar cycloaddition is a suitable approach to synthesizing saponin-like compounds by regioselective glycosylation of the C2/C3 hydroxyl and C28 carboxylic groups of triterpene aglycones maslinic acid (MA) and oleanolic acid (OA). Biological studies on the T-84 human colon carcinoma cell line support the role of the hydroxyl groups at C2/C3, the influence of the aglycone, and the bulky nature of the substituents in C28. OA bearing a α-d-mannose moiety at C28 (compound 18) focused our interest because the estimated inhibitory concentration 50 was similar to that reported for ginsenoside Rh2 against colon cancer cells and it inhibits the G1-S phase transition affecting the cell viability and apoptosis. Considering that triterpenoids from natural sources have been identified as inhibitors of nuclear factor kappa-light-chain-enhancer of activated B cell (NF-κB) signaling, docking studies were conducted to evaluate whether NF-κB may be a potential target. Results are consistent with the biological study and predict a similar binding mode of MA and compound 18 to the p52 subunit from NF-κB but not for OA. The fact that the binding site is shared by the NF-κB inhibitor 6,6-dimethyl-2-(phenylimino)-6,7-dihydrobenzo[d][1,3]oxathiol-4(5H)-one supports the result and points to NF-κB as a potential target of both MA and compound 18.
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Affiliation(s)
- Mariano Ortega-Muñoz
- Department
of Organic Chemistry, Faculty of Sciences, Department of Organic
Chemistry, Biotechnology Institute, Institute of Biopathology and Regenerative Medicine
(IBIMER), and Department of Human Anatomy and Embryology, University of Granada, 18071 Granada, Spain
| | - Fernando Rodríguez-Serrano
- Department
of Organic Chemistry, Faculty of Sciences, Department of Organic
Chemistry, Biotechnology Institute, Institute of Biopathology and Regenerative Medicine
(IBIMER), and Department of Human Anatomy and Embryology, University of Granada, 18071 Granada, Spain
- Biosanitary
Research Institute of Granada (ibs.GRANADA), 18071 Granada, Spain
| | - Eduardo De los Reyes-Berbel
- Department
of Organic Chemistry, Faculty of Sciences, Department of Organic
Chemistry, Biotechnology Institute, Institute of Biopathology and Regenerative Medicine
(IBIMER), and Department of Human Anatomy and Embryology, University of Granada, 18071 Granada, Spain
| | - Nuria Mut-Salud
- Department
of Organic Chemistry, Faculty of Sciences, Department of Organic
Chemistry, Biotechnology Institute, Institute of Biopathology and Regenerative Medicine
(IBIMER), and Department of Human Anatomy and Embryology, University of Granada, 18071 Granada, Spain
| | - Fernando Hernández-Mateo
- Department
of Organic Chemistry, Faculty of Sciences, Department of Organic
Chemistry, Biotechnology Institute, Institute of Biopathology and Regenerative Medicine
(IBIMER), and Department of Human Anatomy and Embryology, University of Granada, 18071 Granada, Spain
| | - Andrea Rodríguez-López
- Department
of Organic Chemistry, Faculty of Sciences, Department of Organic
Chemistry, Biotechnology Institute, Institute of Biopathology and Regenerative Medicine
(IBIMER), and Department of Human Anatomy and Embryology, University of Granada, 18071 Granada, Spain
| | - José M. Garrido
- Department
of Organic Chemistry, Faculty of Sciences, Department of Organic
Chemistry, Biotechnology Institute, Institute of Biopathology and Regenerative Medicine
(IBIMER), and Department of Human Anatomy and Embryology, University of Granada, 18071 Granada, Spain
- Biosanitary
Research Institute of Granada (ibs.GRANADA), 18071 Granada, Spain
- Department
of Cardiovascular Surgery, Virgen de las
Nieves University Hospital, 18071 Granada, Spain
| | - F. Javier López-Jaramillo
- Department
of Organic Chemistry, Faculty of Sciences, Department of Organic
Chemistry, Biotechnology Institute, Institute of Biopathology and Regenerative Medicine
(IBIMER), and Department of Human Anatomy and Embryology, University of Granada, 18071 Granada, Spain
| | - Francisco Santoyo-González
- Department
of Organic Chemistry, Faculty of Sciences, Department of Organic
Chemistry, Biotechnology Institute, Institute of Biopathology and Regenerative Medicine
(IBIMER), and Department of Human Anatomy and Embryology, University of Granada, 18071 Granada, Spain
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