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Baranowski D, Mieczkowski A, Trzybiński D, Woźniak K, Bednarska-Szczepaniak K, Gdaniec Z, Leśnikowski ZJ. INSIGHTS INTO MOLECULAR STRUCTURE OF ADENOSINE-BORON CLUSTER CONJUGATES AND THEIRS PHENYL ISOSTERS AS ADENOSINE RECEPTOR LIGANDS: NUCLEAR MAGNETIC RESONANCE, CRYSTALLOGRAPHIC AND COMPUTATIONAL STUDIES. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.134588] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Carboranes in drug discovery, chemical biology and molecular imaging. Nat Rev Chem 2022; 6:486-504. [PMID: 37117309 DOI: 10.1038/s41570-022-00400-x] [Citation(s) in RCA: 28] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/17/2022] [Indexed: 11/08/2022]
Abstract
There exists a paucity of structural innovation and limited molecular diversity associated with molecular frameworks in drug discovery and biomolecular imaging/chemical probe design. The discovery and exploitation of new molecular entities for medical and biological applications will necessarily involve voyaging into previously unexplored regions of chemical space. Boron clusters, notably the carboranes, offer an alternative to conventional (poly)cyclic organic frameworks that may address some of the limitations associated with the use of novel molecular frameworks in chemical biology or medicine. The high thermal stability, unique 3D structure and aromaticity, kinetic inertness to metabolism and ability to engage in unusual types of intermolecular interactions, such as dihydrogen bonds, with biological receptors make carboranes exquisite frameworks in the design of probes for chemical biology, novel drug candidates and biomolecular imaging agents. This Review highlights the key developments of carborane derivatives made over the last decade as new design tools in medicinal chemistry and chemical biology, showcasing the versatility of this unique family of boron compounds.
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Anionic polyhedral boron clusters conjugates with 7-diethylamino-4-hydroxycoumarin. Synthesis and lipophilicity determination. J Organomet Chem 2021. [DOI: 10.1016/j.jorganchem.2021.121905] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Far‐Red and Near‐Infrared Boron Schiff Bases (BOSCHIBAs) Dyes Bearing Anionic Boron Clusters. Eur J Inorg Chem 2021. [DOI: 10.1002/ejic.202100144] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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Różycka D, Korycka-Machała M, Żaczek A, Dziadek J, Gurda D, Orlicka-Płocka M, Wyszko E, Biniek-Antosiak K, Rypniewski W, Olejniczak AB. Novel Isoniazid-Carborane Hybrids Active in Vitro Against Mycobacterium tuberculosis. Pharmaceuticals (Basel) 2020; 13:ph13120465. [PMID: 33333865 PMCID: PMC7765321 DOI: 10.3390/ph13120465] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2020] [Revised: 11/27/2020] [Accepted: 12/11/2020] [Indexed: 12/11/2022] Open
Abstract
Tuberculosis (TB) is a severe infectious disease with high mortality and morbidity. The emergence of drug-resistant TB has increased the challenge to eliminate this disease. Isoniazid (INH) remains the key and effective component in the therapeutic regimen recommended by World Health Organization (WHO). A series of isoniazid-carborane derivatives containing 1,2-dicarba-closo-dodecaborane, 1,7-dicarba-closo-dodecaborane, 1,12-dicarba-closo-dodecaborane, or 7,8-dicarba-nido-undecaborate anion were synthesized for the first time. The compounds were tested in vitro against the Mycobacterium tuberculosis (Mtb) H37Rv strain and its mutant (DkatG) defective in the synthesis of catalase-peroxidase (KatG). N'-((7,8-dicarba-nido-undecaboranyl)methylidene)isonicotinohydrazide (16) showed the highest activity against the wild-type Mtb strain. All hybrids could inhibit the growth of the ΔkatG mutant in lower concentrations than INH. N'-([(1,12-dicarba-closo-dodecaboran-1yl)ethyl)isonicotinohydrazide (25) exhibited more than 60-fold increase in activity against Mtb DkatG as compared to INH. This compound was also found to be noncytotoxic up to a concentration four times higher than the minimum inhibitory concentration 99% (MIC99) value.
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Affiliation(s)
- Daria Różycka
- Institute of Medical Biology, Polish Academy of Sciences, 106 Lodowa St., 93-232 Lodz, Poland; (D.R.); (M.K.-M.); (J.D.)
| | - Małgorzata Korycka-Machała
- Institute of Medical Biology, Polish Academy of Sciences, 106 Lodowa St., 93-232 Lodz, Poland; (D.R.); (M.K.-M.); (J.D.)
| | - Anna Żaczek
- Institute of Medical Sciences, Medical College, University of Rzeszow, 2A Kopisto Avenue, 35-959 Rzeszow, Poland;
| | - Jarosław Dziadek
- Institute of Medical Biology, Polish Academy of Sciences, 106 Lodowa St., 93-232 Lodz, Poland; (D.R.); (M.K.-M.); (J.D.)
| | - Dorota Gurda
- Institute of Bioorganic Chemistry, Polish Academy of Sciences, 12/14Z. Noskowskiego St., 61-704 Poznan, Poland; (D.G.); (M.O.-P.); (E.W.); (K.B.-A.); (W.R.)
| | - Marta Orlicka-Płocka
- Institute of Bioorganic Chemistry, Polish Academy of Sciences, 12/14Z. Noskowskiego St., 61-704 Poznan, Poland; (D.G.); (M.O.-P.); (E.W.); (K.B.-A.); (W.R.)
| | - Eliza Wyszko
- Institute of Bioorganic Chemistry, Polish Academy of Sciences, 12/14Z. Noskowskiego St., 61-704 Poznan, Poland; (D.G.); (M.O.-P.); (E.W.); (K.B.-A.); (W.R.)
| | - Katarzyna Biniek-Antosiak
- Institute of Bioorganic Chemistry, Polish Academy of Sciences, 12/14Z. Noskowskiego St., 61-704 Poznan, Poland; (D.G.); (M.O.-P.); (E.W.); (K.B.-A.); (W.R.)
| | - Wojciech Rypniewski
- Institute of Bioorganic Chemistry, Polish Academy of Sciences, 12/14Z. Noskowskiego St., 61-704 Poznan, Poland; (D.G.); (M.O.-P.); (E.W.); (K.B.-A.); (W.R.)
| | - Agnieszka B. Olejniczak
- Institute of Medical Biology, Polish Academy of Sciences, 106 Lodowa St., 93-232 Lodz, Poland; (D.R.); (M.K.-M.); (J.D.)
- Correspondence: ; Tel.: +48-42-272-36-37
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Comparative DFT study of inclusion complexes of thymidine-carborane conjugate with β-cyclodextrin and heptakis(2,6-O-dimethyl)-β-cyclodextrin in water. J Mol Liq 2020. [DOI: 10.1016/j.molliq.2020.113767] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Bakardjiev M, El Anwar S, Bavol D, Růžičková Z, Grűner B. Focus on Chemistry of the 10-Dioxane- nido-7,8-dicarba-undecahydrido Undecaborate Zwitterion; Exceptionally Easy Abstraction of Hydrogen Bridge and Double-Action Pathways Observed in Ring Cleavage Reactions with OH - as Nucleophile. Molecules 2020; 25:molecules25040814. [PMID: 32069968 PMCID: PMC7070711 DOI: 10.3390/molecules25040814] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2020] [Revised: 02/08/2020] [Accepted: 02/11/2020] [Indexed: 12/25/2022] Open
Abstract
Ring cleavage of cyclic ether substituents attached to a boron cage via an oxonium oxygen atom are amongst the most versatile methods for conjoining boron closo-cages with organic functional groups. Here we focus on much less tackled chemistry of the 11-vertex zwitterionic compound [10-(O-(CH2-CH2)2O)-nido-7,8-C2B9H11] (1), which is the only known representative of cyclic ether substitution at nido-cages, and explore the scope for the use of this zwitterion 1 in reactions with various types of nucleophiles including bifunctional ones. Most of the nitrogen, oxygen, halogen, and sulphur nucleophiles studied react via nucleophilic substitution at the C1 atom of the dioxane ring, followed by its cleavage that produces six atom chain between the cage and the respective organic moiety. We also report the differences in reactivity of this nido-cage system with the simplest oxygen nucleophile, i.e., OH-. With compound 1, reaction proceeds in two possible directions, either via typical ring cleavage, or by replacement of the whole dioxane ring with -OH at higher temperatures. Furthermore, an easy deprotonation of the hydrogen bridge in 1 was observed that proceeds even in diluted aqueous KOH. We believe this knowledge can be further applied in the design of functional molecules, materials, and drugs.
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Affiliation(s)
- Mário Bakardjiev
- Institute of Inorganic Chemistry of Czech Academy of Sciences, 25068 Řež, Czech Republic; (M.B.); (S.E.A.); (D.B.)
| | - Suzan El Anwar
- Institute of Inorganic Chemistry of Czech Academy of Sciences, 25068 Řež, Czech Republic; (M.B.); (S.E.A.); (D.B.)
| | - Dmytro Bavol
- Institute of Inorganic Chemistry of Czech Academy of Sciences, 25068 Řež, Czech Republic; (M.B.); (S.E.A.); (D.B.)
| | - Zdeňka Růžičková
- Department of General and Inorganic Chemistry, Faculty of Chemical Technology, University of Pardubice, Studentská 95, 53210 Pardubice, Czech Republic;
| | - Bohumír Grűner
- Institute of Inorganic Chemistry of Czech Academy of Sciences, 25068 Řež, Czech Republic; (M.B.); (S.E.A.); (D.B.)
- Correspondence: ; Tel.: +420-31123-6942
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Comparative study of inorganic, boron-rich cluster and organic, phenyl adenosine modifications: synthesis and properties. Future Med Chem 2019; 11:1267-1284. [DOI: 10.4155/fmc-2018-0517] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023] Open
Abstract
Background: Nucleoside analogs are important class of chemotherapeutics. One of the original openings in the nucleoside medicinal chemistry was derivatives comprising a boron cluster component. Results: A series of adenosine derivative pairs containing inorganic boron cluster or alternatively its mimic, organic phenyl modification were synthesized and their physicochemical and biological properties compared. Marked effects of boron clusters, which are qualitatively and quantitatively different from the phenyl group effects, were detected. The studied characteristics include syn/ anti conformation, lipophilicity, cytotoxicity and antiviral activity, as well as phosphorylation by adenosine kinase. Conclusion: The obtained results demonstrate usefulness of the boron clusters for tuning properties of biomolecules and prove their potential as modifying units in design of future therapeutics based on nucleoside structures.
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Chaari M, Gaztelumendi N, Cabrera-González J, Peixoto-Moledo P, Viñas C, Xochitiotzi-Flores E, Farfán N, Ben Salah A, Nogués C, Núñez R. Fluorescent BODIPY-Anionic Boron Cluster Conjugates as Potential Agents for Cell Tracking. Bioconjug Chem 2018; 29:1763-1773. [DOI: 10.1021/acs.bioconjchem.8b00204] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Mahdi Chaari
- Instituto de Ciencia de Materiales de Barcelona (ICMAB-CSIC), Campus de la UAB, E-08193 Bellaterra, Barcelona, Spain
- Laboratoire des Sciences des Matériaux et de l’Environnement, Faculté des Sciences de Sfax, Université de Sfax, B.P. 1171, 3000 Sfax, Tunisie
| | - Nerea Gaztelumendi
- Departament de Biologia Cel·lular, Fisiologia i Immunologia. Universitat Autònoma de Barcelona, E-08193 Bellaterra, Barcelona, Spain
| | - Justo Cabrera-González
- Instituto de Ciencia de Materiales de Barcelona (ICMAB-CSIC), Campus de la UAB, E-08193 Bellaterra, Barcelona, Spain
| | - Paula Peixoto-Moledo
- Departament de Biologia Cel·lular, Fisiologia i Immunologia. Universitat Autònoma de Barcelona, E-08193 Bellaterra, Barcelona, Spain
| | - Clara Viñas
- Instituto de Ciencia de Materiales de Barcelona (ICMAB-CSIC), Campus de la UAB, E-08193 Bellaterra, Barcelona, Spain
| | - Elba Xochitiotzi-Flores
- Facultad de Química, Departamento de Química Orgánica, Universidad Nacional Autónoma de México, 04510 México CDMEX, México
| | - Norberto Farfán
- Facultad de Química, Departamento de Química Orgánica, Universidad Nacional Autónoma de México, 04510 México CDMEX, México
| | - Abdelhamid Ben Salah
- Laboratoire des Sciences des Matériaux et de l’Environnement, Faculté des Sciences de Sfax, Université de Sfax, B.P. 1171, 3000 Sfax, Tunisie
| | - Carme Nogués
- Departament de Biologia Cel·lular, Fisiologia i Immunologia. Universitat Autònoma de Barcelona, E-08193 Bellaterra, Barcelona, Spain
| | - Rosario Núñez
- Instituto de Ciencia de Materiales de Barcelona (ICMAB-CSIC), Campus de la UAB, E-08193 Bellaterra, Barcelona, Spain
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Muñoz-Flores BM, Cabrera-González J, Viñas C, Chávez-Reyes A, Dias HVR, Jiménez-Pérez VM, Núñez R. Organotin Dyes Bearing Anionic Boron Clusters as Cell-Staining Fluorescent Probes. Chemistry 2018; 24:5601-5612. [PMID: 29338104 DOI: 10.1002/chem.201705804] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2017] [Indexed: 11/08/2022]
Abstract
Within the cell nucleus, in the nucleoli, ribosomal RNAs are synthesized and participate in several biological processes. To better understand nucleoli-related processes, their visualization is often required, for which specific markers are needed. Herein, we report the design of novel fluorescent organotin compounds derived from 4-hydroxy-N'-((2-hydroxynaphthalen-1-yl)methylene)benzohydrazide and their cytoplasm and nucleoli staining of B16F10 cells in vitro. Tin compounds bearing an aliphatic carbon chain (-C12 H25 ) and an electron-donating group (-OH) were prepared, and the latter could be derivatized to bear the boron cluster anions [B12 H12 ]2- and [3,3'-Co(1,2-C2 B9 H11 )2 ]- (COSAN). All of the conjugates have been fully characterized and their luminescence properties have been assessed. In general, they show good quantum yields in solution (24-49 %), those for the COSAN derivatives being lower. Remarkably, the linking of [B12 H12 ]2- and COSAN to the complexes made them more soluble, without being detrimental to their luminescence properties. Living B16F10 cells were treated with all of the compounds to determine their fluorescence staining properties; the compounds bearing the aliphatic chain showed a reduced staining capacity due to the formation of aggregates. Notably, the complexes bearing different boron clusters showed different staining effects; those bearing [B12 H12 ]2- showed extraordinary staining of the nucleoli and cytoplasm, whereas those bearing COSAN were only detected in the cytoplasm. The remarkable fluorescence staining properties shown by these organotin compounds make them excellent candidates for fluorescence bioimaging in vitro.
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Affiliation(s)
- Blanca M Muñoz-Flores
- Universidad Autónoma de Nuevo León, Facultad de Ciencias Químicas, Ciudad Universitaria, Av. Universidad s/n, C. P., 66451, Nuevo León, México
| | - Justo Cabrera-González
- Instituto de Ciencia de Materiales de Barcelona (ICMAB-CSIC), Campus UAB, 08193, Bellaterra, Spain
| | - Clara Viñas
- Instituto de Ciencia de Materiales de Barcelona (ICMAB-CSIC), Campus UAB, 08193, Bellaterra, Spain
| | - Arturo Chávez-Reyes
- Centro de Investigación y de Estudios Avanzados del IPN, Unidad Monterrey, PIIT, C.P., 66600 Apodaca, Nuevo León, México
| | - H V Rasika Dias
- Department of Chemistry and Biochemistry, The University of Texas at Arlington, Arlington, Texas, 76019-0065, United States
| | - Víctor M Jiménez-Pérez
- Universidad Autónoma de Nuevo León, Facultad de Ciencias Químicas, Ciudad Universitaria, Av. Universidad s/n, C. P., 66451, Nuevo León, México
| | - Rosario Núñez
- Instituto de Ciencia de Materiales de Barcelona (ICMAB-CSIC), Campus UAB, 08193, Bellaterra, Spain
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