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Sun P, Niu K, Du H, Li R, Chen J, Lu X. Sensitive Electrochemical Biosensor for Rapid Screening of Tumor Biomarker TP53 Gene Mutation Hotspot. BIOSENSORS 2022; 12:658. [PMID: 36005054 PMCID: PMC9406039 DOI: 10.3390/bios12080658] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/20/2022] [Revised: 08/16/2022] [Accepted: 08/17/2022] [Indexed: 11/17/2022]
Abstract
Rapid and sensitive detection of cancer biomarkers is crucial for cancer screening, early detection, and improving patient survival rate. The present study proposes an electrochemical gene-sensor capable of detecting tumor related TP53 gene mutation hotspots by self-assembly of sulfhydryl ended hairpin DNA probes tagged with methylene blue (MB) onto a gold electrode. By performing a hybridization reaction with the target DNA sequence, the gene-sensor can rearrange the probe's structure, resulting in significant electrochemical signal differences by differential pulse voltammetry. When the DNA biosensor is hybridized with 1 μM target DNA, the peak current response signal can decrease more than 60%, displaying high sensitivity and specificity for the TP53 gene. The biosensor achieved rapid and sensitive detection of the TP53 gene with a detection limit of 10 nmol L-1, and showed good specific recognition ability for single nucleotide polymorphism (SNP) and base sequence mismatches in the TP53 gene affecting residue 248 of the P53 protein. Moreover, the biosensor demonstrated good reproducibility, repeatability, operational stability, and anti-interference ability for target DNA molecule in the complex system of 50% fetal bovine serum. The proposed biosensor provides a powerful tool for the sensitive and specific detection of TP53 gene mutation hotspot sequences and could be used in clinical samples for early diagnosis and detection of cancer.
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Affiliation(s)
- Pengcheng Sun
- College of Mechanical and Electronic Engineering, Dalian Minzu University, Dalian 116600, China
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian 116023, China
| | - Kai Niu
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian 116023, China
- University of the Chinese Academy of Sciences, Beijing 100049, China
| | - Haiying Du
- College of Mechanical and Electronic Engineering, Dalian Minzu University, Dalian 116600, China
| | - Ruixin Li
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian 116023, China
| | - Jiping Chen
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian 116023, China
| | - Xianbo Lu
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian 116023, China
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Wan C, Qu A, Li M, Tang R, Fu L, Liu X, Wang P, Wu C. Electrochemical Sensor for Directional Recognition and Measurement of Antibiotic Resistance Genes in Water. Anal Chem 2021; 94:732-739. [PMID: 34932901 DOI: 10.1021/acs.analchem.1c03100] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
The establishment of rapid targeted identification and analysis of antibiotic resistance genes (ARGs) is very important. In this study, an electrochemical sensor, which can detect ARGs was obtained by modifying the sulfhydryl single-stranded DNA probe onto the thin-film gold electrode through self-assembly. The sensor can perform a hybridization reaction with a target sequence to obtain an electrochemical impedance spectroscopy signal. The results showed that when the concentration of the probe used to modify thin-film gold electrodes during preparation was 1 μM, the hybridization time was 1 h, and the hybridization temperature was 35 °C, the self-assembled sensor showed good detection performance for the ARGs encoding β-lactam hydrolase. The measurement ARG concentration linear range is 6.3-900.0 ng/mL, and the R2 is 0.9992. The sensor shows good specific recognition ability for single-base, double-base, and three-base mismatch DNA. In addition, after 30 days of storage at 4 °C, the accurate identification and analysis of ARGs can still be maintained.
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Affiliation(s)
- Chunli Wan
- Department of Environmental Science and Engineering, Fudan University, Shanghai 200438, China
| | - Aoxuan Qu
- Department of Environmental Science and Engineering, Fudan University, Shanghai 200438, China
| | - Min Li
- Research Center of Environmental Pollution Control Engineering Technology, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
| | - Rui Tang
- Department of Environmental Science and Engineering, Fudan University, Shanghai 200438, China
| | - Liya Fu
- Research Center of Environmental Pollution Control Engineering Technology, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
| | - Xiang Liu
- Department of Environmental Science and Engineering, Fudan University, Shanghai 200438, China
| | - Panxin Wang
- Research Center of Environmental Pollution Control Engineering Technology, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
| | - Changyong Wu
- Research Center of Environmental Pollution Control Engineering Technology, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
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3
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Chandran B, Janakiraman K. New Disposable Nitric Oxide Sensor Fabrication Using GaN Nanowires. ACS OMEGA 2019; 4:17171-17176. [PMID: 31656890 PMCID: PMC6811847 DOI: 10.1021/acsomega.9b01609] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/01/2019] [Accepted: 09/20/2019] [Indexed: 06/10/2023]
Abstract
Gallium nitride (GaN) nanowires anchored on the surface of cost-effective pencil graphite electrodes (PGEs) have been developed as a new disposable nitric oxide (NO) sensor through a hydrothermal method followed by annealing treatment. The as-obtained nanomaterials were examined by field emission scanning electron microscopy, high-resolution transmission electron microscopy, Raman spectroscopy, X-ray photoelectron spectroscopy, and EIS. Concurrently, the electrocatalytic performance has been analyzed using cyclic voltammetry and amperometric measurements. The experimental results exhibit good electrochemical sensing performance toward the generated NO in NO2 - with a wide linear detection range of 1.0 μM to 1.0 mM with a correlation coefficient of 0.999 and a detection limit of 0.180 μM. In addition, the GaN nanowire-modified PGE surface showed high selectivity for the detection of NO as compared to other relevant biomolecules. This confirms that the PGE/GaN nanowire is a new promising electrochemical sensor for the sensitive detection of NO.
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Gomes FO, Maia LB, Loureiro JA, Pereira MC, Delerue-Matos C, Moura I, Moura JJ, Morais S. Biosensor for direct bioelectrocatalysis detection of nitric oxide using nitric oxide reductase incorporated in carboxylated single-walled carbon nanotubes/lipidic 3 bilayer nanocomposite. Bioelectrochemistry 2019; 127:76-86. [DOI: 10.1016/j.bioelechem.2019.01.010] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2018] [Revised: 01/31/2019] [Accepted: 01/31/2019] [Indexed: 02/07/2023]
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5
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Nitric Oxide Detection Using Electrochemical Third-generation Biosensors - Based on Heme Proteins and Porphyrins. ELECTROANAL 2018. [DOI: 10.1002/elan.201800421] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
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6
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An electrochemical nitric oxide biosensor based on immobilized cytochrome c on a chitosan-gold nanocomposite modified gold electrode. Int J Biol Macromol 2018; 108:250-258. [DOI: 10.1016/j.ijbiomac.2017.11.157] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2017] [Revised: 11/25/2017] [Accepted: 11/25/2017] [Indexed: 11/19/2022]
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7
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Jamshidi Moghadam S, Azadbakh A. Helix structure of the double-stranded DNA for aptameric biosensing and imaging of cytochrome c. Anal Biochem 2017; 540-541:20-29. [PMID: 29074397 DOI: 10.1016/j.ab.2017.10.016] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2017] [Revised: 10/01/2017] [Accepted: 10/20/2017] [Indexed: 11/29/2022]
Abstract
Here, a method is introduced for construction the aptameric biosensor for biosensing detection of cytochrome C (CYC) based on chain-shape structure of aptasensor by using highly dispersed silver nanoparticles (AgNPs) on acid-oxidized carbon nanotube (CNTs) substrate. The animated capture probe (ssDNA1) and CYC-aptamer (ssDNA2) was immobilized on AgNPs/CNTs surface by covalent amide bonds formed by the carboxyl groups on the nanotubes and the amino groups on the oligonucleotides and hybridization, respectively. In this protocol, the nucleic acids at both ends of the ssDNA1 were sequenced to be complementary (tailor-made ssDNA1). The helix structure of the double-stranded DNA was fabricated by hybridizing ssDNA2 with its complementary sequence (ssDNA1). CYC-aptamer could be forced to dissociate from the sensing interface after CYC triggered structure switching of the aptamer and ssDNA1 thus tend to form a chain-shape structure through the hybridization of the complementary sequences at both its ends. The proposed assay permitted to detect CYC in the linear range of 0.01-750 nM with a very low limit of detection (LOD) (1.66 pM). In addition, the specificity of this sensing system for the detection of CYC was also demonstrated by using albumin, fructose, myoglobin, and hemoglobin.
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Affiliation(s)
| | - Azadeh Azadbakh
- Department of Chemistry, Khorramabad Branch, Islamic Azad University, Khorramabad, Iran.
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Alvarez-Paggi D, Hannibal L, Castro MA, Oviedo-Rouco S, Demicheli V, Tórtora V, Tomasina F, Radi R, Murgida DH. Multifunctional Cytochrome c: Learning New Tricks from an Old Dog. Chem Rev 2017; 117:13382-13460. [DOI: 10.1021/acs.chemrev.7b00257] [Citation(s) in RCA: 135] [Impact Index Per Article: 16.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Damián Alvarez-Paggi
- Departamento
de Química Inorgánica, Analítica y Química
Física and INQUIMAE (CONICET-UBA), Facultad de Ciencias Exactas
y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Pab. 2, piso 1, Buenos Aires C1428EHA, Argentina
| | - Luciana Hannibal
- Department
of Pediatrics, Universitätsklinikum Freiburg, Mathildenstrasse 1, Freiburg 79106, Germany
- Departamento
de Bioquímica and Center for Free Radical and Biomedical Research,
Facultad de Medicina, Universidad de la República, Av.
Gral. Flores 2125, Montevideo 11800, Uruguay
| | - María A. Castro
- Departamento
de Química Inorgánica, Analítica y Química
Física and INQUIMAE (CONICET-UBA), Facultad de Ciencias Exactas
y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Pab. 2, piso 1, Buenos Aires C1428EHA, Argentina
| | - Santiago Oviedo-Rouco
- Departamento
de Química Inorgánica, Analítica y Química
Física and INQUIMAE (CONICET-UBA), Facultad de Ciencias Exactas
y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Pab. 2, piso 1, Buenos Aires C1428EHA, Argentina
| | - Veronica Demicheli
- Departamento
de Bioquímica and Center for Free Radical and Biomedical Research,
Facultad de Medicina, Universidad de la República, Av.
Gral. Flores 2125, Montevideo 11800, Uruguay
| | - Veronica Tórtora
- Departamento
de Bioquímica and Center for Free Radical and Biomedical Research,
Facultad de Medicina, Universidad de la República, Av.
Gral. Flores 2125, Montevideo 11800, Uruguay
| | - Florencia Tomasina
- Departamento
de Bioquímica and Center for Free Radical and Biomedical Research,
Facultad de Medicina, Universidad de la República, Av.
Gral. Flores 2125, Montevideo 11800, Uruguay
| | - Rafael Radi
- Departamento
de Bioquímica and Center for Free Radical and Biomedical Research,
Facultad de Medicina, Universidad de la República, Av.
Gral. Flores 2125, Montevideo 11800, Uruguay
| | - Daniel H. Murgida
- Departamento
de Química Inorgánica, Analítica y Química
Física and INQUIMAE (CONICET-UBA), Facultad de Ciencias Exactas
y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Pab. 2, piso 1, Buenos Aires C1428EHA, Argentina
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Elliott J, Duay J, Simoska O, Shear JB, Stevenson KJ. Gold Nanoparticle Modified Transparent Carbon Ultramicroelectrode Arrays for the Selective and Sensitive Electroanalytical Detection of Nitric Oxide. Anal Chem 2017; 89:1267-1274. [DOI: 10.1021/acs.analchem.6b03987] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Janine Elliott
- Department
of Chemistry, Center for Nano- and Molecular Science and Technology, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Jonathon Duay
- Department
of Chemistry, Center for Nano- and Molecular Science and Technology, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Olja Simoska
- Department
of Chemistry, Center for Nano- and Molecular Science and Technology, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Jason B. Shear
- Department
of Chemistry, Center for Nano- and Molecular Science and Technology, The University of Texas at Austin, Austin, Texas 78712, United States
| | - Keith J. Stevenson
- Center
for Electrochemical Energy Storage, Skolkovo Institute of Science and Technology, Moscow 143026, Russia
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Bhat SA, Pandit SA, Rather MA, Rather GM, Rashid N, Ingole PP, Bhat MA. Self-assembled AuNPs on sulphur-doped graphene: a dual and highly efficient electrochemical sensor for nitrite (NO2−) and nitric oxide (NO). NEW J CHEM 2017. [DOI: 10.1039/c7nj01565h] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Gold nanoparticles self-assembled over sulphur-doped graphene as a reusable electrocatalyst for selective and sensitive quantification of NO2− and NO.
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Affiliation(s)
| | | | | | | | - Nusrat Rashid
- Indian Institute of Technology Delhi
- New Delhi 110016
- India
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11
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Macroporous indium tin oxide electrode layers as conducting substrates for immobilization of bulky electroactive guests. Electrochim Acta 2014. [DOI: 10.1016/j.electacta.2014.05.046] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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12
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Xu T, Scafa N, Xu LP, Su L, Li C, Zhou S, Liu Y, Zhang X. Electrochemical Sensors for Nitric Oxide Detection in Biological Applications. ELECTROANAL 2014. [DOI: 10.1002/elan.201300564] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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13
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Müller V, Rathousky J, Fattakhova-Rohlfing D. Covalent immobilization of redox protein within the mesopores of transparent conducting electrodes. Electrochim Acta 2014. [DOI: 10.1016/j.electacta.2013.10.136] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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14
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Nanocomposite of polymerized ionic liquid and graphene used as modifier for direct electrochemistry of cytochrome c and nitric oxide biosensing. J Solid State Electrochem 2012. [DOI: 10.1007/s10008-012-1769-5] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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15
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Direct electron transfer of cytochrome c and its biosensor based on poly(ferrocenylsilane)–DNA composite film. J Electroanal Chem (Lausanne) 2011. [DOI: 10.1016/j.jelechem.2010.11.018] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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16
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Application of ionic liquid–dsDNA biocomposite film for the direct electrochemistry of myglobin on carbon ionic liquid electrode. J Electroanal Chem (Lausanne) 2010. [DOI: 10.1016/j.jelechem.2010.09.011] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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17
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Li N, Zhao H, Yuan R, Peng K, Chai Y. An amperometric immunosensor with a DNA polyion complex membrane/gold nanoparticles-backbone for antibody immobilisation. Electrochim Acta 2008. [DOI: 10.1016/j.electacta.2008.08.015] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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18
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Liu SQ, Cao ML, Dong SL. Electrochemical and Ultraviolet–visible spectroscopic studies on the interaction of deoxyribonucleic acid with vitamin B6. Bioelectrochemistry 2008; 74:164-9. [DOI: 10.1016/j.bioelechem.2008.07.004] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2007] [Revised: 07/16/2008] [Accepted: 07/17/2008] [Indexed: 11/16/2022]
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19
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Direct electrochemical behavior of cytochrome c, and its determination on phytic acid modified electrode. Mikrochim Acta 2008. [DOI: 10.1007/s00604-008-0098-y] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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20
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Geng M, Xu J, Hu S. In situ electrogenerated poly(Eriochrome black T) film and its application in nitric oxide sensor. REACT FUNCT POLYM 2008. [DOI: 10.1016/j.reactfunctpolym.2008.06.001] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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