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Che L, Guo S, Li Y, Zhu Y. Exploring the dynamics and trends of carbon emission spatiotemporal patterns in the Chengdu-Chongqing Economic Zone, China, from 2000 to 2020. Sci Rep 2024; 14:16341. [PMID: 39013982 PMCID: PMC11252400 DOI: 10.1038/s41598-024-67204-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Accepted: 07/09/2024] [Indexed: 07/18/2024] Open
Abstract
Analysis of the spatial-temporal pattern and trend of carbon emissions provides an important scientific basis for the development of a low-carbon economy. Based on the corrected NPP-VIIRS and DMSP/OLS nighttime light data, a carbon emission model for the Chengdu-Chongqing Economic Zone (CCEZ) in China is constructed. Furthermore, the article establishes an integrated qualitative and quantitative research system. The qualitative results show that at the city and county scales, the high carbon emission areas and counties are mainly distributed in Chengdu and Chongqing, while the low carbon emission areas are concentrated in the marginal cities of the CCEZ and the counties with low levels of industrialization around the Sichuan Basin. The high-carbon emission zone tended to expand to the north, and the low-carbon emission zone tended to expand to the south. At the grid scale, the carbon emissions of the CCEZ fluctuated and increased from 2000 to 2020, forming a trend connected with those of the central city, with high carbon emissions at the core and radiating outward expansion. Quantitative analysis revealed that carbon emissions at the county and grid scales exhibited a significant positive global spatial correlation, and the overall correlation degree exhibited an increasing trend.
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Affiliation(s)
- Lu Che
- School of Environment and Resources, Southwest University of Science and Technology, Mianyang, 612000, China
| | - Sidai Guo
- School of Economics and Management, Southwest University of Science and Technology, Mianyang, 612000, China.
| | - Yangli Li
- School of Civil Engineering and Architecture, Southwest University of Science and Technology, Mianyang, 612000, China
| | - Yihao Zhu
- School of Civil Engineering and Architecture, Southwest University of Science and Technology, Mianyang, 612000, China
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Stüer‐Patowsky K, Lilje O, Wurzbacher C. Quantification of the dark fungal taxon Cryptomycota using qPCR. ENVIRONMENTAL MICROBIOLOGY REPORTS 2024; 16:e13257. [PMID: 38615691 PMCID: PMC11016352 DOI: 10.1111/1758-2229.13257] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2023] [Accepted: 03/20/2024] [Indexed: 04/16/2024]
Abstract
Fungi are present in a wide variety of natural environments, and in the last years, various studies have shown that they are quite abundant in aquatic ecosystems. In addition, a whole new highly diverse phylum, the Cryptomycota, was discovered. Nevertheless, research on aquatic fungi and a detailed evaluation of their functions and distribution are still sparse. One of the main reasons is a limitation in reliable identification and quantification methods. To bridge part of the research gap, this study aims to implement a quantitative PCR method to detect and quantify the newly discovered phylum. We developed and validated a Cryptomycota-specific qPCR primer pair targeting the 5.8S region that detects the majority of Cryptomycota, but Microsporidia. The resulting amplicon is 102 bp long. We used different environmental samples to evaluate the primer pair, various fungal sequences as negative control and positive control sequences. Obtained amplicons were sequenced using Illumina, and the obtained ASVs were all classified as Cryptomycota. The qPCR method works reliably and specifically for the quantification of Cryptomycota in environmental samples.
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Affiliation(s)
- Katrin Stüer‐Patowsky
- Chair of Urban Water Systems EngineeringTechnical University of MunichGarchingGermany
| | - Osu Lilje
- School of Life and Environmental SciencesThe University of SydneyCamperdownNew South WalesAustralia
| | - Christian Wurzbacher
- Chair of Urban Water Systems EngineeringTechnical University of MunichGarchingGermany
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Hölker F, Jechow A, Schroer S, Tockner K, Gessner MO. Light pollution of freshwater ecosystems: principles, ecological impacts and remedies. Philos Trans R Soc Lond B Biol Sci 2023; 378:20220360. [PMID: 37899012 PMCID: PMC10613548 DOI: 10.1098/rstb.2022.0360] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2023] [Accepted: 08/01/2023] [Indexed: 10/31/2023] Open
Abstract
Light pollution caused by artificial light at night (ALAN) is increasingly recognized as a major driver of global environmental change. Since emissions are rapidly growing in an urbanizing world and half of the human population lives close to a freshwater shoreline, rivers and lakes are ever more exposed to light pollution worldwide. However, although light conditions are critical to aquatic species, and freshwaters are biodiversity hotspots and vital to human well-being, only a small fraction of studies conducted on ALAN focus on these ecosystems. The effects of light pollution on freshwaters are broad and concern all levels of biodiversity. Experiments have demonstrated diverse behavioural and physiological responses of species, even at low light levels. Prominent examples are skyglow effects on diel vertical migration of zooplankton and the suppression of melatonin production in fish. However, responses vary widely among taxa, suggesting consequences for species distribution patterns, potential to create novel communities across ecosystem boundaries, and cascading effects on ecosystem functioning. Understanding, predicting and alleviating the ecological impacts of light pollution on freshwaters requires a solid consideration of the physical properties of light propagating in water and a multitude of biological responses. This knowledge is urgently needed to develop innovative lighting concepts, mitigation strategies and specifically targeted measures. This article is part of the theme issue 'Light pollution in complex ecological systems'.
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Affiliation(s)
- Franz Hölker
- Leibniz Institute of Freshwater Ecology and Inland Fisheries (IGB), 12587 Berlin and 16775 Stechlin, Germany
- Institute of Biology, Freie Universität Berlin, 14195 Berlin, Germany
| | - Andreas Jechow
- Leibniz Institute of Freshwater Ecology and Inland Fisheries (IGB), 12587 Berlin and 16775 Stechlin, Germany
| | - Sibylle Schroer
- Leibniz Institute of Freshwater Ecology and Inland Fisheries (IGB), 12587 Berlin and 16775 Stechlin, Germany
| | - Klement Tockner
- Senckenberg Society for Nature Research, 60325 Frankfurt Germany
- Department of BioSciences, Goethe-University, 60438 Frankfurt, Germany
| | - Mark O. Gessner
- Leibniz Institute of Freshwater Ecology and Inland Fisheries (IGB), 12587 Berlin and 16775 Stechlin, Germany
- Department of Ecology, Berlin Institute of Technology, 10587 Berlin, Germany
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Ribas MP, García-Ulloa M, Espunyes J, Cabezón O. Improving the assessment of ecosystem and wildlife health: microbiome as an early indicator. Curr Opin Biotechnol 2023; 81:102923. [PMID: 36996728 DOI: 10.1016/j.copbio.2023.102923] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2023] [Revised: 02/23/2023] [Accepted: 02/28/2023] [Indexed: 03/29/2023]
Abstract
Human activities are causing dramatic declines in ecosystem health, compromising the functioning of the life-support system, economic activity, and animal and human health. In this context, monitoring the health of ecosystems and wildlife populations is crucial for determining ecological dynamics and assessing management interventions. A growing body of evidence indicates that microbiome provides a meaningful early indicator of ecosystem and wildlife health. Microbiome is ubiquitous and both environmental and host-associated microbiomes rapidly reflect anthropogenic disturbances. However, we still need to overcome current limitations such as nucleic acid degradation, sequencing depth, and the establishment of baseline data to maximize the potential of microbiome studies.
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Numberger D, Zoccarato L, Woodhouse J, Ganzert L, Sauer S, Márquez JRG, Domisch S, Grossart HP, Greenwood AD. Urbanization promotes specific bacteria in freshwater microbiomes including potential pathogens. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 845:157321. [PMID: 35839872 DOI: 10.1016/j.scitotenv.2022.157321] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2022] [Revised: 07/08/2022] [Accepted: 07/08/2022] [Indexed: 06/15/2023]
Abstract
Freshwater ecosystems are characterized by complex and highly dynamic microbial communities that are strongly structured by their local environment and biota. Accelerating urbanization and growing city populations detrimentally alter freshwater environments. To determine differences in freshwater microbial communities associated with urbanization, full-length 16S rRNA gene PacBio sequencing was performed in a case study from surface waters and sediments from a wastewater treatment plant, urban and rural lakes in the Berlin-Brandenburg region, Northeast Germany. Water samples exhibited highly habitat specific bacterial communities with multiple genera showing clear urban signatures. We identified potentially harmful bacterial groups associated with environmental parameters specific to urban habitats such as Alistipes, Escherichia/Shigella, Rickettsia and Streptococcus. We demonstrate that urbanization alters natural microbial communities in lakes and, via simultaneous warming and eutrophication and creates favourable conditions that promote specific bacterial genera including potential pathogens. Our findings are evidence to suggest an increased potential for long-term health risk in urbanized waterbodies, at a time of rapidly expanding global urbanization. The results highlight the urgency for undertaking mitigation measures such as targeted lake restoration projects and sustainable water management efforts.
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Affiliation(s)
- Daniela Numberger
- Leibniz Institute for Zoo and Wildlife Research, Alfred-Kowalke-Strasse 17, 10315 Berlin, Germany; Leibniz Institute of Freshwater Ecology and Inland Fisheries, Alte Fischerhütte 2, 16775 Stechlin, Germany
| | - Luca Zoccarato
- Leibniz Institute of Freshwater Ecology and Inland Fisheries, Alte Fischerhütte 2, 16775 Stechlin, Germany; University of Natural Resources and Life Sciences, Vienna, Department of Biotechnology, Institute of Computational Biology, Muthgasse 18, 1190 Vienna, Austria
| | - Jason Woodhouse
- Leibniz Institute of Freshwater Ecology and Inland Fisheries, Alte Fischerhütte 2, 16775 Stechlin, Germany
| | - Lars Ganzert
- Leibniz Institute of Freshwater Ecology and Inland Fisheries, Alte Fischerhütte 2, 16775 Stechlin, Germany; GFZ German Research Centre for Geosciences, Helmholtz Centre Potsdam, Section 3.7 Geomicrobiology, Telegrafenberg C-422, 14473 Potsdam, Germany
| | - Sascha Sauer
- Max Delbrück Center for Molecular Medicine in the Helmholtz Association, 16775, 13125 Berlin, Germany
| | | | - Sami Domisch
- Leibniz Institute of Freshwater Ecology and Inland Fisheries, Müggelseedamm 310, 12587 Berlin, Germany
| | - Hans-Peter Grossart
- Leibniz Institute of Freshwater Ecology and Inland Fisheries, Alte Fischerhütte 2, 16775 Stechlin, Germany; University of Potsdam, Institute of Biochemistry and Biology, Karl-Liebknecht-Strasse 24-25, 14476 Potsdam, Germany; Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Altensteinstrasse 32, 14195 Berlin, Germany.
| | - Alex D Greenwood
- Leibniz Institute for Zoo and Wildlife Research, Alfred-Kowalke-Strasse 17, 10315 Berlin, Germany; Freie Universität Berlin, Department of Veterinary Medicine, Institute for Virology, Robert von Ostertag-Strasse 7-13, 14163 Berlin, Germany
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Biderre‐Petit C, Charvy J, Bronner G, Chauvet M, Debroas D, Gardon H, Hennequin C, Jouan‐Dufournel I, Moné A, Monjot A, Ravet V, Vellet A, Lepère C. FreshOmics
: a manually curated and standardized –omics database for investigating freshwater microbiomes. Mol Ecol Resour 2022; 23:222-232. [DOI: 10.1111/1755-0998.13692] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2022] [Revised: 07/22/2022] [Accepted: 07/25/2022] [Indexed: 11/30/2022]
Affiliation(s)
- Corinne Biderre‐Petit
- CNRS, Laboratoire Microorganismes: Génome et Environnement Université Clermont Auvergne Clermont‐Ferrand France
| | - Jean‐Christophe Charvy
- CNRS, Laboratoire Microorganismes: Génome et Environnement Université Clermont Auvergne Clermont‐Ferrand France
| | - Gisèle Bronner
- CNRS, Laboratoire Microorganismes: Génome et Environnement Université Clermont Auvergne Clermont‐Ferrand France
| | - Marina Chauvet
- CNRS, Laboratoire Microorganismes: Génome et Environnement Université Clermont Auvergne Clermont‐Ferrand France
| | - Didier Debroas
- CNRS, Laboratoire Microorganismes: Génome et Environnement Université Clermont Auvergne Clermont‐Ferrand France
| | - Hélène Gardon
- CNRS, Laboratoire Microorganismes: Génome et Environnement Université Clermont Auvergne Clermont‐Ferrand France
| | - Claire Hennequin
- CNRS, Laboratoire Microorganismes: Génome et Environnement Université Clermont Auvergne Clermont‐Ferrand France
| | - Isabelle Jouan‐Dufournel
- CNRS, Laboratoire Microorganismes: Génome et Environnement Université Clermont Auvergne Clermont‐Ferrand France
| | - Anne Moné
- CNRS, Laboratoire Microorganismes: Génome et Environnement Université Clermont Auvergne Clermont‐Ferrand France
| | - Arthur Monjot
- CNRS, Laboratoire Microorganismes: Génome et Environnement Université Clermont Auvergne Clermont‐Ferrand France
| | - Viviane Ravet
- CNRS, Laboratoire Microorganismes: Génome et Environnement Université Clermont Auvergne Clermont‐Ferrand France
| | - Agnès Vellet
- CNRS, Laboratoire Microorganismes: Génome et Environnement Université Clermont Auvergne Clermont‐Ferrand France
| | - Cécile Lepère
- CNRS, Laboratoire Microorganismes: Génome et Environnement Université Clermont Auvergne Clermont‐Ferrand France
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