Nutrient loading decreases blue carbon by mediating fungi activities within seagrass meadows

Nutrient loading accelerates breakdown of refractory dissolved organic carbon in seagrass ecosystem waters

Nutrient loading is a major driver of seagrass ecosystem decline and also threatens the capacity for seagrass ecosystems to act as 'blue carbon' sinks. Dissolved organic carbon (DOC) represents a crucial component of carbon storage in seagrass ecosystems, with refractory DOC (RDOC) playing a key role in long-term (millennial time scale) carbon stocks. The processes governing RDOC are heavily influenced by microbial activity. While it is known that nutrient loading can weaken DOC sequestration potential by changing the DOC composition and transformation, the impact of nutrients on microbial communities that regulate the RDOC pool in seagrass ecosystems remains poorly understood. To address this gap, we conducted a 300-d laboratory incubation experiment to examine the effects of nutrient enrichment on DOC processing and microbial community dynamics. As expected, nutrient addition significantly accelerated the decline in DOC concentration, resulting in the residual DOC exhibiting a higher degree of humification and more depleted δ13C constituents. Concurrent with DOC degradation, microbial community composition shifted from a mix of r- and K-strategists in the early stages to a dominance of K-strategists and fungi in the later stages. Specific bacterial taxa, such as unidentified Rhodospirillales and Oceanococcus, were more prevalent in eutrophicated seagrass waters, while Magnetospira and Nocardioide were more abundant in less eutrophicated waters by the end of the incubation. We speculated that these microbial groups likely adapted to utilise more RDOC, contributing to its decline. The decline in RDOC was approximately 2-times greater in less eutrophicated seagrass waters compared to more eutrophicated waters (26.9 % and 14.5 % decline respectively), which suggests that less eutrophicated seagrass ecosystems are more vulnerable. This study provides evidence that high nutrient loading can enhance RDOC remineralization, ultimately weakening the long-term carbon sequestration potential of seagrass ecosystems.

Nutrient-loaded seagrass litter experiences accelerated recalcitrant organic matter decay

High coastal nutrient loading can cause changes in seagrass chemistry traits that may lead to variability in seagrass litter decomposition processes. Such changes in decomposition have the potential to alter the carbon (C) sequestration capacity within seagrass meadows ('blue carbon'). However, the external and internal factors that drive the variability in decomposition rates of the different organic matter (OM) types of seagrass are poorly understood, especially recalcitrant OM (i.e. cellulose-associated OM and lignin-associated OM), thereby limiting our ability to evaluate the C sequestration potential. It was conducted a laboratory incubation to compare differences in the decomposition of Halophila beccarii litter collected from seagrass meadows with contrasting nutrient loading histories. The exponential decay constants of seagrass litter mass, cellulose-associated OM and lignin-associated OM were 0.009-0.032, 0.014-0.054 and 0.009-0.033 d-1, respectively. The seagrass litter collected from meadows with high nutrient loading exhibited greater losses of mass (25.0-41.2 %), cellulose-associated OM (2.8-18.5 %) and lignin-associated OM (9.6-31.2 %) than litter from relatively low nutrient loading meadows. The initial and temporal changes of the litter nitrogen (N) and phosphorus (P) concentrations, stoichiometric ratios of lignin/N, C/N, and C/P, and cellulose-associated OM content, were strongly correlated with the losses of litter mass and different types of OM. Further, temporal changes of litter C and OM types, particularly the OM and labile OM concentrations, were identified as the main driving factors for the loss of litter mass and loss of different OM types. These results indicated that nutrient-loaded seagrass litter, characterized by elevated nutrient levels and diminished amounts of recalcitrant OM, exhibits an accelerated decay rate for the recalcitrant OM. These differences in litter quality would lead to a reduced contribution of seagrass litter to long-term C stocks in eutrophic meadows, thereby weakening the stability of C sequestration. Considering the expected changes in seagrass litter chemistry traits and decay rates due to long-term nutrient loading, this study provides useful information for improving C sequestration capabilities through effective pollution management.

Exploring Fungal Diversity in Seagrass Ecosystems for Pharmaceutical and Ecological Insights

Marine ecosystems are important in discovering novel fungi with interesting metabolites that have shown great potential in pharmaceutical and biotechnological industries. Seagrasses, the sole submerged marine angiosperm, host diverse fungal taxa with mostly unknown metabolic capabilities. They are considered to be one of the least studied marine fungal habitats in the world. This review gathers and analyzes data from studies related to seagrasses-associated fungi, including taxonomy and biogeography, and highlights existing research gaps. The significance of the seagrass-fungal associations remains largely unknown, and current understanding of fungal diversity is limited to specific geographical regions such as the Tropical Atlantic, Mediterranean, and Indo-Pacific. Our survey yielded 29 culture-dependent studies on seagrass-associated endophytic and epiphytic fungi, and 13 miscellaneous studies, as well as 11 meta-studies, with no pathogenic true fungi described. There is a significant opportunity to expand existing studies and conduct multidisciplinary research into novel species and their potential applications, especially from understudied geographical locations. Future research should prioritize high-throughput sequencing and mycobiome studies, utilizing both culture-dependent and -independent approaches to effectively identify novel seagrass-associated fungal taxa.

Nutrient enrichment and herbivory alter carbon balance in temperate seagrass communities

Large nutrient levels and herbivory stress, particularly when acting together, drive a variety of responses in seagrass communities that ultimately may weaken their carbon balance. An in situ three-months experiment was carried out in two contrasting seasons to address the effects of two levels of nutrient load and three levels of artificial clipping on Cymodocea nodosa plants. Nutrient enrichment shifted the community from autotrophic to heterotrophic and reduced DOC fluxes in winter, whereas enhanced community carbon metabolism and DOC fluxes in summer. Herbivory stress decreased the net primary production in both seasons, whereas net DOC release increased in winter but decreased in summer. A reduction of seagrass food-web structure was observed under both disturbances evidencing impacts on the seagrass ecosystems services by altering the carbon transfer process and the loss of superficial OC, which may finally weaken the blue carbon storage capacity of these communities.

Seagrass decline weakens sediment organic carbon stability

Seagrass meadows are globally recognized as critical natural carbon sinks, commonly known as 'blue carbon'. However, seagrass decline attributed to escalating human activities and climate change, significantly influences their carbon sequestration capacity. A key aspect in comprehending the impact of seagrass decline on carbon sequestration is understanding how degradation affects the stored blue carbon, primarily consisting of sediment organic carbon (SOC). While it is widely acknowledged that seagrass decline affects the input of organic carbon, little is known about its impact on SOC pool stability. To address this knowledge, we examined variations in total SOC and recalcitrant SOC (RSOC) at a depth of 15 cm in nine seagrass meadows located on the coast of Southern China. Our findings revealed that the ratio of RSOC to SOC (RSOC/SOC) ranged from 27 % to 91 % in the seagrass meadows, and the RSOC/SOC increased slightly with depth. Comparing different seagrass species, we observed that SOC and RSOC stocks were 1.94 and 3.19-fold higher under Halophila beccarii and Halophila ovalis meadows compared to Thalassia hemprichii and Enhalus acoroides meadows. Redundancy and correlation analyses indicated that SOC and RSOC content and stock, as well as the RSOC/SOC ratio, decreased with declining seagrass shoot density, biomass, and coverage. This implies that the loss of seagrass, caused by human activities and climate change, results in a reduction in carbon sequestration stability. Further, the RSOC decreased by 15 %, 29 %, and 40 % under unvegetated areas compared to adjacent Halophila spp., T. hemprichii and E. acoroides meadows, respectively. Given the anticipated acceleration of seagrass decline due to climate change and increasing coastal development, our study provides timely information for developing coastal carbon protection strategies. These strategies should focus on preserving seagrass and restoring damaged seagrass meadows, to maximize their carbon sequestration capacity.

Taxonomic and functional β-diversity patterns reveal stochastic assembly rules in microbial communities of seagrass beds

Microorganisms are important members of seagrass bed ecosystems and play a crucial role in maintaining the health of seagrasses and the ecological functions of the ecosystem. In this study, we systematically quantified the assembly processes of microbial communities in fragmented seagrass beds and examined their correlation with environmental factors. Concurrently, we explored the relative contributions of species replacement and richness differences to the taxonomic and functional β-diversity of microbial communities, investigated the potential interrelation between these components, and assessed the explanatory power of environmental factors. The results suggest that stochastic processes dominate community assembly. Taxonomic β-diversity differences are governed by species replacement, while for functional β-diversity, the contribution of richness differences slightly outweighs that of replacement processes. A weak but significant correlation (p < 0.05) exists between the two components of β-diversity in taxonomy and functionality, with almost no observed significant correlation with environmental factors. This implies significant differences in taxonomy, but functional convergence and redundancy within microbial communities. Environmental factors are insufficient to explain the β-diversity differences. In conclusion, the assembly of microbial communities in fragmented seagrass beds is governed by stochastic processes. The patterns of taxonomic and functional β-diversity provide new insights and evidence for a better understanding of these stochastic assembly rules. This has important implications for the conservation and management of fragmented seagrass beds.

Plant growth and development of tropical seagrass determined rhizodeposition and its related microbial community

In the recent study, we investigated the seasonal variations in root exudation and microbial community structure in the rhizosphere of seagrass Enhalus acoroides in the South China Sea. We found that the quantity and quality of root exudates varied seasonally, with higher exudation rates and more bioavailable dissolved organic matter (DOM) during the seedling and vegetative stages in spring and summer. Using Illumina NovaSeq sequencing, we analyzed bacterial and fungal communities and discovered that microbial diversity and composition were influenced by root exudate characteristics s and seagrass biomass, which were strongly dependent on seagrass growth stages. Certain bacterial groups, such as Ruegeria, Sulfurovum, Photobacterium, and Ralstonia were closely associated with root exudation and may contribute to sulfur cycling, nitrogen fixation, and carbon remineralization, which were important for plant early development. Similarly, specific fungal taxa, including Astraeus, Alternaria, Rocella, and Tomentella, were enriched in spring and summer and showed growth-promoting abilities. Overall, our study suggests that seagrass secretes different compounds in its exudates at various developmental stages, shaping the rhizosphere microbial assemblages.

Changes in surface sediment carbon compositions in response to tropical seagrass meadow restoration

Seagrass meadows are declining at a global scale, threatening their capacity as blue carbon sinks. Restoration of seagrasses (via seagrass seeds or plant transplantation) may recover their carbon sequestration capacity. Previous studies have predominantly focused on sediment organic carbon (SOC), while variations in sediment carbon compositions remain poorly understood, limiting our comprehension of the influence of seagrass restoration on sediment carbon stability. Here, we researched the differences in surface (0-3 cm) sediment carbon compositions in response to tropical seagrass transplantation among species (Thalassia hemprichii and Enhalus acoroides); specifically, differences in labile, recalcitrant and refractory SOC, as well as sediment inorganic carbon (SIC) compositions variations under transplanted T. hemprichii and E. acoroides communities. It was found that seagrass transplantation enhanced suspended particle organic matter, and epiphyte and macroalgae input to surface sediment, which recovered the surface SOC concentration and stock rapidly to natural levels (increased ∼1.6-fold) within two years following transplantation. The elevated contribution of epiphyte and macroalgae significantly increased the surface labile sediment organic matter (SOM), but not the recalcitrant and refractory SOM composition after short-term transplantation. Meanwhile, surface SIC was significantly elevated, which might be mainly ascribed to allochthonous carbonate particle trapped under transplanted area with implications for carbon sequestration. The higher canopy and longer leaf seagrass species, E. acoroides, had elevated SOC, SIC and was more labile composition, compared to T. hemprichii transplant. Overall, this research suggests that tropical seagrass transplantation can increase the surface SOC, SIC concentration by increasing the labile organic matter and allochthonous carbonate particle input, respectively, with varying significantly among seagrass species.

The core mangrove microbiome reveals shared taxa potentially involved in nutrient cycling and promoting host survival

BACKGROUND

Microbes have fundamental roles underpinning the functioning of our planet, they are involved in global carbon and nutrient cycling, and support the existence of multicellular life. The mangrove ecosystem is nutrient limited and if not for microbial cycling of nutrients, life in this harsh environment would likely not exist. The mangroves of Southeast Asia are the oldest and most biodiverse on the planet, and serve vital roles helping to prevent shoreline erosion, act as nursery grounds for many marine species and sequester carbon. Despite these recognised benefits and the importance of microbes in these ecosystems, studies examining the mangrove microbiome in Southeast Asia are scarce.cxs RESULTS: Here we examine the microbiome of Avicenia alba and Sonneratia alba and identify a core microbiome of 81 taxa. A further eight taxa (Pleurocapsa, Tunicatimonas, Halomonas, Marinomonas, Rubrivirga, Altererythrobacte, Lewinella, and Erythrobacter) were found to be significantly enriched in mangrove tree compartments suggesting key roles in this microbiome. The majority of those identified are involved in nutrient cycling or have roles in the production of compounds that promote host survival.

CONCLUSION

The identification of a core microbiome furthers our understanding of mangrove microbial biodiversity, particularly in Southeast Asia where studies such as this are rare. The identification of significantly different microbial communities between sampling sites suggests environmental filtering is occurring, with hosts selecting for a microbial consortia most suitable for survival in their immediate environment. As climate change advances, many of these microbial communities are predicted to change, however, without knowing what is currently there, it is impossible to determine the magnitude of any deviations. This work provides an important baseline against which change in microbial community can be measured.

Computational estimation of sediment symbiotic bacterial structures of seagrasses overgrowing downstream of onshore aquaculture

Coastal seagrass meadows are essential in blue carbon and aquatic ecosystem services. However, this ecosystem has suffered severe eutrophication and destruction due to the expansion of aquaculture. Therefore, methods for the flourishing of seagrass are still being explored. Here, data from 49 public coastal surveys on the distribution of seagrass and seaweed around the onshore aquaculture facilities are revalidated, and an exceptional area where the seagrass Zostera marina thrives was found near the shore downstream of the onshore aquaculture facility. To evaluate the characteristics of the sediment for growing seagrass, physicochemical properties and bacterial ecological evaluations of the sediment were conducted. Evaluation of chemical properties in seagrass sediments confirmed a significant increase in total carbon and a decrease in zinc content. Association analysis and linear discriminant analysis refined bacterial candidates specified in seagrass overgrown- and nonovergrown-sediment. Energy landscape analysis indicated that the symbiotic bacterial groups of seagrass sediment were strongly affected by the distance close to the seagrass-growing aquaculture facility despite their bacterial population appearing to fluctuate seasonally. The bacterial population there showed an apparent decrease in the pathogen candidates belonging to the order Flavobacteriales. Moreover, structure equation modeling and a linear non-Gaussian acyclic model based on the machine learning data estimated an optimal sediment symbiotic bacterial group candidate for seagrass growth as follows: the Lachnospiraceae and Ruminococcaceae families as gut-inhabitant bacteria, Rhodobacteraceae as photosynthetic bacteria, and Desulfobulbaceae as cable bacteria modulating oxygen or nitrate reduction and oxidation of sulfide. These observations confer a novel perspective on the sediment symbiotic bacterial structures critical for blue carbon and low-pathogenic marine ecosystems in aquaculture.