Effect of furfural on nitrogen assimilating enzymes of the lactose utilizing yeasts Candida blankii 35 and Candida pseudotropicalis 11

Effects of microbial inoculum on microbial community and enzyme activity involved in nitrogen-sulfur metabolism during sewage sludge composting

The purpose of this study was to access the effects of thermotolerant nitrifying microorganisms and sulfur-oxidizing bacteria on microbial community and enzyme activity involved in nitrogen‑sulfur metabolism during laboratory-scale sewage sludge (SS) composting，and to do a microbial-environmental factor association analysis to promote composting key species for nitrogen‑sulfur transformation in the body. The microbial community structure and the activities variation of six key enzyme involved were detected. The microbial inocula added had little impact on the diversity of the microbial community but changed its succession direction, and the abundance of Actinobacteria was decreased obviously of inoculation treatment (TR). The three dominant genera and indicator species in TR were significantly correlated with the conversion of nitrogen and sulfur. The addition of microbial inocula promoted the conversion of nitrogen and sulfur in SS compost, and increased the activities of the key enzymes and the microbial genera involved in nitrogen‑sulfur conversion. In other words, the nitrification and sulfur oxidation were enhanced simultaneously in the later stage of composting in TR.

Securing a furan-based biorefinery: disclosing the genetic basis of the degradation of hydroxymethylfurfural and its derivatives in the model fungus Aspergillus nidulans

Hydroxymethylfurfural (HMF) is a promising lignocellulosic-derived source for the generation of diverse chemical building blocks constituting an alternative to fossil fuels. However, it remains unanswered if ubiquitous fungi can ensure their efficient decay, similar to that observed in highly specialised fungi. To disclose the genetic basis of HMF degradation in aspergilli, we performed a comprehensive analysis of Aspergillus nidulans ability to tolerate and to degrade HMF and its derivatives (including an HMF-dimer). We identified the degradation pathway using a suite of metabolomics methods and showed that HMF was modified throughout sequential reactions, ultimately yielding derivatives subsequently channelled to the TCA cycle. Based on the previously revealed hmfFGH gene cluster of Cupriavidus basilensis, we combined gene expression of homologous genes in Aspergillus nidulans and functional analyses in single-deletion mutants. Results were complemented with orthology analyses across the genomes of twenty-five fungal species. Our results support high functional redundancy for the initial steps of the HMF degradation pathway in the majority of the analysed fungal genomes and the assignment of a single-copy furan-2,5-dicarboxylic acid decarboxylase gene in A. nidulans. Collectively our data made apparent the superior capacity of aspergilli to mineralise HMF, furthering the environmental sustainability of a furan-based chemistry.

Effects of sucrose amendment on ammonia assimilation during sewage sludge composting

The aim of this study was to evaluate the laboratory-scale composting of sewage sludge and pumice mixtures that were amended with sucrose. The variation in temperature, pH, NH4(+)-N, ammonia emission, bacterial community, ammonia assimilating bacteria (AAB) populations and enzymatic activity related to ammonia assimilation were detected. The addition of sucrose increased the AAB population by 2.5-3.5 times, reduced ammonia emission by 24.7-31.1% compared with the control treatment, and promoted the growth of Bacillus and Wautersiella. The activities of glutamate dehydrogenase (GDH), glutamate synthase (GS) and glutamine synthetase (GOGAT), were enhanced by the addition of sucrose. GDH made a substantial contribution to ammonia assimilation when the ammonia concentration was high (⩾1.5g/kg) in the thermophilic phase. The GS/GOGAT cycle played an important role at low ammonia concentrations (⩽1.1g/kg) in the cooling phase. These results suggested that adding sucrose to sludge compost could promote ammonia assimilation and reduce ammonia emission.

Improving furfural tolerance of Zymomonas mobilis by rewiring a sigma factor RpoD protein

Furfural from lignocellulosic hydrolysates is the key inhibitor for bio-ethanol fermentation. In this study, we report a strategy of improving the furfural tolerance in Zymomonas mobilis on the transcriptional level by engineering its global transcription sigma factor (σ(70), RpoD) protein. Three furfural tolerance RpoD mutants (ZM4-MF1, ZM4-MF2, and ZM4-MF3) were identified from error-prone PCR libraries. The best furfural-tolerance strain ZM4-MF2 reached to the maximal cell density (OD600) about 2.0 after approximately 30 h, while control strain ZM4-rpoD reached its highest cell density of about 1.3 under the same conditions. ZM4-MF2 also consumed glucose faster and yield higher ethanol; expression levels and key Entner-Doudoroff (ED) pathway enzymatic activities were also compared to control strain under furfural stress condition. Our results suggest that global transcription machinery engineering could potentially be used to improve stress tolerance and ethanol production in Z. mobilis.