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Won SJ, Yim JH, Kim HK. Synthesis of Short-Chain Alkyl Butyrate through Esterification Reaction Using Immobilized Rhodococcus Cutinase and Analysis of Substrate Specificity through Molecular Docking. J Microbiol Biotechnol 2023; 33:268-276. [PMID: 36524336 PMCID: PMC9998203 DOI: 10.4014/jmb.2211.11022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2022] [Accepted: 11/26/2022] [Indexed: 12/23/2022]
Abstract
Alkyl butyrate with fruity flavor is known as an important additive in the food industry. We synthesized various alkyl butyrates from various fatty alcohol and butyric acid using immobilized Rhodococcus cutinase (Rcut). Esterification reaction was performed in a non-aqueous system including heptane, isooctane, hexane, and cyclohexane. As a result of performing the alkyl butyrate synthesis reaction using alcohols of various chain lengths, it was found that the preference for the alcohol substrate had the following order: C6 > C4 > C8 > C10 > C2. Through molecular docking analysis, it was found that the greater the hydrophobicity of alcohol, the higher the accessibility to the active site of the enzyme. However, since the number of torsions increased as the chain length increased, it became difficult for the hydroxyl oxygen of the alcohol to access the γO of serine at the enzyme active site. These molecular docking results were consistent with substrate preference results of the Rcut enzyme. The Rcut maintained the synthesis efficiency at least for 5 days in isooctane solvent. We synthesized as much as 452 mM butyl butyrate by adding 100 mM substrate daily for 5 days and performing the reaction. These results show that Rcut is an efficient enzyme for producing alkyl butyrate used in the food industry.
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Affiliation(s)
- Seok-Jae Won
- Department of Biotechnology, The Catholic University of Korea, Bucheon 14662, Republic of Korea
| | - Joung Han Yim
- Korea Polar Research Institute, Incheon 406-840, Republic of Korea
| | - Hyung Kwoun Kim
- Department of Biotechnology, The Catholic University of Korea, Bucheon 14662, Republic of Korea
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2
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Abed KM, Hayyan A, Elgharbawy AAM, Hizaddin HF, Hashim MA, Hasan HA, Hamid MD, Zuki FM, Saleh J, Aldaihani AGH. Palm Raceme as a Promising Biomass Precursor for Activated Carbon to Promote Lipase Activity with the Aid of Eutectic Solvents. MOLECULES (BASEL, SWITZERLAND) 2022; 27:molecules27248734. [PMID: 36557866 PMCID: PMC9781083 DOI: 10.3390/molecules27248734] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/10/2022] [Revised: 12/06/2022] [Accepted: 12/06/2022] [Indexed: 12/14/2022]
Abstract
This study concerns the role of activated carbon (AC) from palm raceme as a support material for the enhancement of lipase-catalyzed reactions in an aqueous solution, with deep eutectic solvent (DES) as a co-solvent. The effects of carbonization temperature, impregnation ratio, and carbonization time on lipase activity were studied. The activities of Amano lipase from Burkholderia cepacia (AML) and lipase from the porcine pancreas (PPL) were used to investigate the optimum conditions for AC preparation. The results showed that AC has more interaction with PPL and effectively provides greater enzymatic activity compared with AML. The optimum treatment conditions of AC samples that yield the highest enzymatic activity were 0.5 (NaOH (g)/palm raceme (g)), 150 min, and a carbonization temperature of 400 °C. DES was prepared from alanine/sodium hydroxide and used with AC for the further enhancement of enzymatic activity. Kinetic studies demonstrated that the activity of PPL was enhanced with the immobilization of AC in a DES medium.
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Affiliation(s)
- Khalid M. Abed
- Department of Chemical Engineering, Faculty of Engineering, Universiti Malaya, Kuala Lumpur 50603, Malaysia
- Department of Chemical Engineering, College of Engineering, University of Baghdad, Baghdad 10071, Iraq
- University of Malaya Centre for Ionic Liquids (UMCiL), Universiti Malaya, Kuala Lumpur 50603, Malaysia
| | - Adeeb Hayyan
- Department of Chemical Engineering, Faculty of Engineering, Universiti Malaya, Kuala Lumpur 50603, Malaysia
- University of Malaya Centre for Ionic Liquids (UMCiL), Universiti Malaya, Kuala Lumpur 50603, Malaysia
- Correspondence: (A.H.); (H.F.H.); (H.A.H.)
| | - Amal A. M. Elgharbawy
- International Institute for Halal Research and Training (INHART), International Islamic University Malaysia, Kuala Lumpur 53100, Malaysia
- Bioenvironmental Engineering Research Centre (BERC), Department of Biotechnology Engineering, Faculty of Engineering, International Islamic University Malaysia (IIUM), Kuala Lumpur 53100, Malaysia
| | - Hanee F. Hizaddin
- Department of Chemical Engineering, Faculty of Engineering, Universiti Malaya, Kuala Lumpur 50603, Malaysia
- University of Malaya Centre for Ionic Liquids (UMCiL), Universiti Malaya, Kuala Lumpur 50603, Malaysia
- Correspondence: (A.H.); (H.F.H.); (H.A.H.)
| | - Mohd Ali Hashim
- Department of Chemical Engineering, Faculty of Engineering, Universiti Malaya, Kuala Lumpur 50603, Malaysia
| | - Hassimi Abu Hasan
- Department of Chemical and Process Engineering, Faculty of Engineering and Built Environment, Universiti Kebangsaan Malaysia, Bangi 43600, Malaysia
- Research Centre for Sustainable Process Technology (CESPRO), Faculty of Engineering and Built Environment, Universiti Kebangsaan Malaysia, Bangi 43600, Malaysia
- Correspondence: (A.H.); (H.F.H.); (H.A.H.)
| | - Mahar Diana Hamid
- Department of Chemical Engineering, Faculty of Engineering, Universiti Malaya, Kuala Lumpur 50603, Malaysia
- University of Malaya Centre for Ionic Liquids (UMCiL), Universiti Malaya, Kuala Lumpur 50603, Malaysia
| | - Fathiah M. Zuki
- Department of Chemical Engineering, Faculty of Engineering, Universiti Malaya, Kuala Lumpur 50603, Malaysia
- University of Malaya Centre for Ionic Liquids (UMCiL), Universiti Malaya, Kuala Lumpur 50603, Malaysia
| | - Jehad Saleh
- Chemical Engineering Department, King Saud University, P.O. Box 800, Riyadh 11421, Saudi Arabia
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3
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Amino functionalization of magnetic multiwalled carbon nanotubes with flexible hydrophobic spacer for immobilization of Candida rugosa lipase and application in biocatalytic production of fruit flavour esters ethyl butyrate and butyl butyrate. APPLIED NANOSCIENCE 2022. [DOI: 10.1007/s13204-022-02657-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
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4
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Nanocellulose and natural deep eutectic solvent as potential biocatalyst system toward enzyme immobilization. MOLECULAR CATALYSIS 2022. [DOI: 10.1016/j.mcat.2022.112422] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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5
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Zaera F. Designing Sites in Heterogeneous Catalysis: Are We Reaching Selectivities Competitive With Those of Homogeneous Catalysts? Chem Rev 2022; 122:8594-8757. [PMID: 35240777 DOI: 10.1021/acs.chemrev.1c00905] [Citation(s) in RCA: 69] [Impact Index Per Article: 34.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
A critical review of different prominent nanotechnologies adapted to catalysis is provided, with focus on how they contribute to the improvement of selectivity in heterogeneous catalysis. Ways to modify catalytic sites range from the use of the reversible or irreversible adsorption of molecular modifiers to the immobilization or tethering of homogeneous catalysts and the development of well-defined catalytic sites on solid surfaces. The latter covers methods for the dispersion of single-atom sites within solid supports as well as the use of complex nanostructures, and it includes the post-modification of materials via processes such as silylation and atomic layer deposition. All these methodologies exhibit both advantages and limitations, but all offer new avenues for the design of catalysts for specific applications. Because of the high cost of most nanotechnologies and the fact that the resulting materials may exhibit limited thermal or chemical stability, they may be best aimed at improving the selective synthesis of high value-added chemicals, to be incorporated in organic synthesis schemes, but other applications are being explored as well to address problems in energy production, for instance, and to design greener chemical processes. The details of each of these approaches are discussed, and representative examples are provided. We conclude with some general remarks on the future of this field.
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Affiliation(s)
- Francisco Zaera
- Department of Chemistry and UCR Center for Catalysis, University of California, Riverside, California 92521, United States
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Hussin NH, Wahab RA, Elias N, Jacob AG, Zainal-Abidin MH, Abdullah F, Sulaiman NJ, Misson M. Electrospun Magnetic Nanocellulose-Polyethersulfone-Conjugated Aspergillus oryzae Lipase for Synthesis of Ethyl Valerate. MEMBRANES 2021; 11:972. [PMID: 34940473 PMCID: PMC8707156 DOI: 10.3390/membranes11120972] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/08/2021] [Revised: 11/30/2021] [Accepted: 12/02/2021] [Indexed: 11/20/2022]
Abstract
A novel greener MNC/PES membrane was developed through an electrospinning technique for lipase immobilization to catalyze the synthesis of ethyl valerate (EV). In this study, the covalent immobilization of Aspergillus oryzae lipase (AOL) onto an electrospun nanofibrous membrane consisting of magnetic nanocellulose (MNC) and polyethersulfone (PES) to produce EV was statistically optimized. Raman spectroscopy, Fourier-transform infrared spectroscopy: attenuated total reflection, field emission scanning electron microscopy, energy dispersive X-ray spectroscopy, thermal gravimetric analysis (TGA), and differential thermal gravimetric (DTG) of MNC/PES-AOL demonstrated that AOL was successfully immobilized onto the fibers. The Taguchi design-assisted immobilization of AOL onto MNC/PES fibers identified that 1.10 mg/mL protein loading, 4 mL reaction volume, 250 rpm stirring rate, and 50 °C were optimal to yield 72.09% of EV in 24 h. The thermal stability of MNC/PES-AOL was improved by ≈20% over the free AOL, with reusability for up to five consecutive esterification cycles while demonstrating an exceptional half-life of 120 h. Briefly, the electrospun MNC/PES fibers that immobilized AOL showed promising applicability in yielding relatively good EV levels. This study suggests that using MNC as fillers in a PES to improve AOL activity and durability for a longer catalytic process could be a viable option.
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Affiliation(s)
- Nurul Hidayah Hussin
- Department of Chemistry, Faculty of Science, Universiti Teknologi Malaysia (UTM), Johor Bahru 81310, Johor, Malaysia; (N.H.H.); (N.E.); (A.G.J.); (M.H.Z.-A.); (F.A.)
- Enzyme Technology and Green Synthesis Group, Faculty of Science, Universiti Teknologi Malaysia (UTM), Johor Bahru 81310, Johor, Malaysia
| | - Roswanira Abdul Wahab
- Department of Chemistry, Faculty of Science, Universiti Teknologi Malaysia (UTM), Johor Bahru 81310, Johor, Malaysia; (N.H.H.); (N.E.); (A.G.J.); (M.H.Z.-A.); (F.A.)
- Enzyme Technology and Green Synthesis Group, Faculty of Science, Universiti Teknologi Malaysia (UTM), Johor Bahru 81310, Johor, Malaysia
- Advanced Membrane Technology Research Centre (AMTEC), Universiti Teknologi Malaysia (UTM), Johor Bahru 81310, Johor, Malaysia
| | - Nursyafiqah Elias
- Department of Chemistry, Faculty of Science, Universiti Teknologi Malaysia (UTM), Johor Bahru 81310, Johor, Malaysia; (N.H.H.); (N.E.); (A.G.J.); (M.H.Z.-A.); (F.A.)
- Enzyme Technology and Green Synthesis Group, Faculty of Science, Universiti Teknologi Malaysia (UTM), Johor Bahru 81310, Johor, Malaysia
| | - Adikwu Gowon Jacob
- Department of Chemistry, Faculty of Science, Universiti Teknologi Malaysia (UTM), Johor Bahru 81310, Johor, Malaysia; (N.H.H.); (N.E.); (A.G.J.); (M.H.Z.-A.); (F.A.)
- Enzyme Technology and Green Synthesis Group, Faculty of Science, Universiti Teknologi Malaysia (UTM), Johor Bahru 81310, Johor, Malaysia
- Department of Applied Chemistry, Federal University Dutsin-Ma (FUDMA), Dutsin-Ma P.M.B 5001, Katsina State, Nigeria
| | - Mohamad Hamdi Zainal-Abidin
- Department of Chemistry, Faculty of Science, Universiti Teknologi Malaysia (UTM), Johor Bahru 81310, Johor, Malaysia; (N.H.H.); (N.E.); (A.G.J.); (M.H.Z.-A.); (F.A.)
| | - Faizuan Abdullah
- Department of Chemistry, Faculty of Science, Universiti Teknologi Malaysia (UTM), Johor Bahru 81310, Johor, Malaysia; (N.H.H.); (N.E.); (A.G.J.); (M.H.Z.-A.); (F.A.)
| | - Nurul Jannah Sulaiman
- Department of Bioprocess & Polymer Engineering, School of Chemical & Energy Engineering, Faculty of Engineering, Universiti Teknologi Malaysia (UTM), Johor Bahru 81310, Johor, Malaysia;
| | - Mailin Misson
- Biotechnology Research Institute, Universiti Malaysia Sabah, Jalan UMS, Kota Kinabalu 88400, Sabah, Malaysia
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Jacob AG, Wahab RA, Misson M. Operational Stability, Regenerability, and Thermodynamics Studies on Biogenic Silica/Magnetite/Graphene Oxide Nanocomposite-Activated Candida rugosa Lipase. Polymers (Basel) 2021; 13:polym13213854. [PMID: 34771409 PMCID: PMC8587300 DOI: 10.3390/polym13213854] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2021] [Revised: 11/02/2021] [Accepted: 11/02/2021] [Indexed: 11/24/2022] Open
Abstract
Inorganic biopolymer-based nanocomposites are useful for stabilizing lipases for enhanced catalytic performance and easy separation. Herein, we report the operational stability, regenerability, and thermodynamics studies of the ternary biogenic silica/magnetite/graphene oxide nanocomposite (SiO2/Fe3O4/GO) as a support for Candida rugosa lipase (CRL). The X-ray photoelectron spectroscopy (XPS), X-ray diffraction (XRD), field-electron scanning electron microscopy (FESEM), vibrating sample magnetometry (VSM), and nitrogen adsorption/desorption data on the support and biocatalyst corroborated their successful fabrication. XPS revealed the Fe3O4 adopted Fe2+ and Fe3+ oxidation states, while XRD data of GO yielded a peak at 2θ = 11.67°, with the SiO2/Fe3O4/GO revealing a high surface area (≈261 m2/g). The fourier transform infrared (FTIR) spectra affirmed the successful fabricated supports and catalyst. The half-life and thermodynamic parameters of the superparamagnetic immobilized CRL (CRL/SiO2/Fe3O4/GO) improved over the free CRL. The microwave-regenerated CRL/SiO2/Fe3O4/GO (≈82%) exhibited higher catalytic activity than ultrasonic-regenerated (≈71%) ones. Lower activation (Ea) and higher deactivation energies (Ed) were also noted for the CRL/SiO2/Fe3O4/GO (13.87 kJ/mol, 32.32 kJ/mol) than free CRL (15.26 kJ/mol, 27.60 kJ/mol). A peak at 4.28 min in the gas chromatograph-flame ionization detection (GC-FID) chromatogram of the purified ethyl valerate supported the unique six types of 14 hydrogen atoms of the ester (CAS: 539-82-2) in the proton nuclear magnetic resonance (1H-NMR) data. The results collectively demonstrated the suitability of SiO2/Fe3O4/GO in stabilizing CRL for improved operational stability and thermodynamics and permitted biocatalyst regenerability.
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Affiliation(s)
- Adikwu Gowon Jacob
- Department of Chemistry, Faculty of Science, Universiti Teknologi Malaysia (UTM), Johor Bahru 81310, Johor, Malaysia;
- Department of Applied Chemistry, Federal University Dutsin-Ma (FUDMA), Dutsin-Ma P.M.B. 5001, Katsina State, Nigeria
- Enzyme Technology and Green Synthesis Group, Faculty of Science, Universiti Teknologi Malaysia (UTM), Johor Bahru 81310, Johor, Malaysia
| | - Roswanira Abdul Wahab
- Department of Chemistry, Faculty of Science, Universiti Teknologi Malaysia (UTM), Johor Bahru 81310, Johor, Malaysia;
- Enzyme Technology and Green Synthesis Group, Faculty of Science, Universiti Teknologi Malaysia (UTM), Johor Bahru 81310, Johor, Malaysia
- Advanced Membrane Technology Research Centre (AMTEC), Universiti Teknologi Malaysia (UTM), Johor Bahru 81310, Johor, Malaysia
- Correspondence: or (R.A.W.); (M.M.)
| | - Mailin Misson
- Biotechnology Research Institute, Universiti Malaysia Sabah, Jalan UMS, Kota Kinabalu 88400, Sabah, Malaysia
- Correspondence: or (R.A.W.); (M.M.)
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8
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Performance of Candida rugosa lipase supported on nanocellulose-silica-reinforced polyethersulfone membrane for the synthesis of pentyl valerate: Kinetic, thermodynamic and regenerability studies. MOLECULAR CATALYSIS 2021. [DOI: 10.1016/j.mcat.2021.111852] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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9
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Multicatalytic Hybrid Materials for Biocatalytic and Chemoenzymatic Cascades—Strategies for Multicatalyst (Enzyme) Co-Immobilization. Catalysts 2021. [DOI: 10.3390/catal11080936] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022] Open
Abstract
During recent decades, the use of enzymes or chemoenzymatic cascades for organic chemistry has gained much importance in fundamental and industrial research. Moreover, several enzymatic and chemoenzymatic reactions have also served in green and sustainable manufacturing processes especially in fine chemicals, pharmaceutical, and flavor/fragrance industries. Unfortunately, only a few processes have been applied at industrial scale because of the low stabilities of enzymes along with the problematic processes of their recovery and reuse. Immobilization and co-immobilization offer an ideal solution to these problems. This review gives an overview of all the pathways for enzyme immobilization and their use in integrated enzymatic and chemoenzymatic processes in cascade or in a one-pot concomitant execution. We place emphasis on the factors that must be considered to understand the process of immobilization. A better understanding of this fundamental process is an essential tool not only in the choice of the best route of immobilization but also in the understanding of their catalytic activity.
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Ternary biogenic silica/magnetite/graphene oxide composite for the hyperactivation of Candida rugosa lipase in the esterification production of ethyl valerate. Enzyme Microb Technol 2021; 148:109807. [PMID: 34116744 DOI: 10.1016/j.enzmictec.2021.109807] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2020] [Revised: 04/16/2021] [Accepted: 04/20/2021] [Indexed: 02/07/2023]
Abstract
Oil palm leaves (OPL) silica (SiO2) can replace the energy-intensive, commercially produced SiO2. Moreover, the agronomically sourced biogenic SiO2 is more biocompatible and cost-effective enzyme support, which properties could be improved by the addition of magnetite (Fe3O4) and graphene oxide (GO) to yield better ternary support to immobilize enzymes, i.e., Candida rugosa lipase (CRL). This study aimed to optimize the Candida rugosa lipase (CRL immobilization onto the ternary OPL-silica-magnetite (Fe3O4)-GO (SiO2/Fe3O4/GO) support, for use as biocatalyst for ethyl valerate (EV) production. Notably, this is the first study detailing the CRL/SiO2/Fe3O4/GO biocatalyst preparation for rapid and high yield production of ethyl valerate (EV). AFM and FESEM micrographs revealed globules of CRL covalently bound to GL-A-SiO2/Fe3O4/GO; similar to Raman and UV-spectroscopy results. FTIR spectra revealed amide bonds at 3478 cm-1 and 1640 cm-1 from covalent interactions between CRL and GL-A-SiO2/Fe3O4/GO. Optimum immobilization conditions were 4% (v/v) glutaraldehyde, 8 mg/mL CRL, at 16 h stirring in 150 mM NaCl at 30 °C, offering 24.78 ± 0.26 mg/g protein (specific activity = 65.24 ± 0.88 U/g). The CRL/SiO2/Fe3O4/GO yielded 77.43 ± 1.04 % of EV compared to free CRL (48.75 ± 0.70 %), verifying the suitability of SiO2/Fe3O4/GO to hyperactivate and stabilize CRL for satisfactory EV production.
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11
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Different strategies for the lipase immobilization on the chitosan based supports and their applications. Int J Biol Macromol 2021; 179:170-195. [PMID: 33667561 DOI: 10.1016/j.ijbiomac.2021.02.198] [Citation(s) in RCA: 52] [Impact Index Per Article: 17.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2020] [Revised: 02/24/2021] [Accepted: 02/26/2021] [Indexed: 01/15/2023]
Abstract
Immobilized enzymes have received incredible interests in industry, pharmaceuticals, chemistry and biochemistry sectors due to their various advantages such as ease of separation, multiple reusability, non-toxicity, biocompatibility, high activity and resistant to environmental changes. This review in between various immobilized enzymes focuses on lipase as one of the most practical enzyme and chitosan as a preferred biosupport for lipase immobilization and provides a broad range of studies of recent decade. We highlight several aspects of lipase immobilization on the surface of chitosan support containing various types of lipase and immobilization techniques from physical adsorption to covalent bonding and cross-linking with their benefits and drawbacks. The recent advances and future perspectives that can improve the present problems with lipase and chitosan such as high-price of lipase and low mechanical resistance of chitosan are also discussed. According to the literature, optimization of immobilization methods, combination of these methods with other techniques, physical and chemical modifications of chitosan, co-immobilization and protein engineering can be useful as a solution to overcome the mentioned limitations.
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12
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Wahab RA, Elias N, Abdullah F, Ghoshal SK. On the taught new tricks of enzymes immobilization: An all-inclusive overview. REACT FUNCT POLYM 2020. [DOI: 10.1016/j.reactfunctpolym.2020.104613] [Citation(s) in RCA: 64] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
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13
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Mohd Hussin FNN, Attan N, Wahab RA. Taguchi design-assisted immobilization of Candida rugosa lipase onto a ternary alginate/nanocellulose/montmorillonite composite: Physicochemical characterization, thermal stability and reusability studies. Enzyme Microb Technol 2020; 136:109506. [DOI: 10.1016/j.enzmictec.2019.109506] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2019] [Revised: 12/06/2019] [Accepted: 12/26/2019] [Indexed: 10/25/2022]
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14
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Bahaman AH, Wahab RA, Abdul Hamid AA, Abd Halim KB, Kaya Y. Molecular docking and molecular dynamics simulations studies on β-glucosidase and xylanase Trichoderma asperellum to predict degradation order of cellulosic components in oil palm leaves for nanocellulose preparation. J Biomol Struct Dyn 2020; 39:2628-2641. [DOI: 10.1080/07391102.2020.1751713] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Affiliation(s)
- Aina Hazimah Bahaman
- Department of Chemistry, Faculty of Science, Universiti Teknologi Malaysia, UTM Johor Bahru, Johor, Malaysia
- Enzyme Technology and Green Synthesis Group, Universiti Teknologi Malaysia, UTM Johor Bahru, Johor, Malaysia
| | - Roswanira Abdul Wahab
- Department of Chemistry, Faculty of Science, Universiti Teknologi Malaysia, UTM Johor Bahru, Johor, Malaysia
- Enzyme Technology and Green Synthesis Group, Universiti Teknologi Malaysia, UTM Johor Bahru, Johor, Malaysia
| | - Azzmer Azzar Abdul Hamid
- Department of Biotechnology, Kuliyyah of Science, International Islamic University Malaysia, Kuantan, Malaysia
- Research Unit for Bioinformatics and Computational Biology (RUBIC), Kulliyyah of Science, International Islamic University Malaysia, Pahang, Malaysia
| | - Khairul Bariyyah Abd Halim
- Department of Biotechnology, Kuliyyah of Science, International Islamic University Malaysia, Kuantan, Malaysia
- Research Unit for Bioinformatics and Computational Biology (RUBIC), Kulliyyah of Science, International Islamic University Malaysia, Pahang, Malaysia
| | - Yilmaz Kaya
- Department of Agricultural Biotechnology, Faculty of Agriculture, Ondokuz Mayis University, Samsun, Turkey
- Department of Biology, Faculty of Science, Kyrgyz-Turkish Manas University, Bishkek, Kyrgyzstan
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15
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Guo HM, Zhao Y, Yang MNO, Yang ZH, Li JH. The enantioselective effects and potential risks of paclobutrazol residue during cucumber pickling process. JOURNAL OF HAZARDOUS MATERIALS 2020; 386:121882. [PMID: 31884369 DOI: 10.1016/j.jhazmat.2019.121882] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/17/2019] [Revised: 11/22/2019] [Accepted: 12/10/2019] [Indexed: 06/10/2023]
Abstract
For decades, pesticides have been widely used for controlling pests and protecting crops around the world, and the food safety issues caused by these compounds have raised widespread concern. However, the different enantioselective behaviors and biological activities of chiral pesticide enantiomers are often ignored. In this work, a novel method was put forward to investigate the enantioselective effects and potential risks of two paclobutrazol enantiomers during cucumber pickling process. The degradation kinetics indicated that when paclobutrazol reside in cucumber and was introduced into the pickling process, the half-time of paclobutrazol isomers were significantly different (9.24 d and 16.6 d), and the conversion phenomenon between the two enantiomers could also be observed. In addition, results from 16S rRNA and ITS sequencing shown that (2R, 3R)-paclobutrazol and (2S, 3S)-paclobutrazol have an obviously enantiomeric effects on microbial community of pickling system and the degradation of paclobutrazol was probably attributed to the presence of Pseudomonas and Serratia. Finally, the microorganisms functions were found to be disrupted under the exposure of (2R, 3R)-paclobutrazol and metabolic function of microorganisms to xenobiotic was inhibited, which might cause potential risks to the quality of preserved foods. In summary, we have devised a method and provided a novel insight into the potential risks of chiral pesticide residues on food safety and human health.
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Affiliation(s)
- Hao-Ming Guo
- College of Plant Science and Technology, Department of Plant Protection, Huazhong Agriculture University, Wuhan, 430070, China
| | - Yue Zhao
- College of Plant Science and Technology, Department of Plant Protection, Huazhong Agriculture University, Wuhan, 430070, China
| | - Mei-Nan Ou Yang
- College of Plant Science and Technology, Department of Plant Protection, Huazhong Agriculture University, Wuhan, 430070, China
| | - Zhong-Hua Yang
- College of Plant Science and Technology, Department of Plant Protection, Huazhong Agriculture University, Wuhan, 430070, China.
| | - Jian-Hong Li
- College of Plant Science and Technology, Department of Plant Protection, Huazhong Agriculture University, Wuhan, 430070, China.
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16
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Bahaman AH, Abdul Wahab R, Hamid AAA, Halim KBA, Kaya Y, Edbeib MF. Substrate docking and molecular dynamic simulation for prediction of fungal enzymes from Trichoderma species-assisted extraction of nanocellulose from oil palm leaves. J Biomol Struct Dyn 2019; 38:4246-4258. [DOI: 10.1080/07391102.2019.1679667] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Aina Hazimah Bahaman
- Department of Chemistry, Faculty of Science, Universiti Teknologi Malaysia, Johor, Malaysia
- Enzyme Technology and Green Synthesis Group, Universiti Teknologi Malaysia, Johor, Malaysia
| | - Roswanira Abdul Wahab
- Department of Chemistry, Faculty of Science, Universiti Teknologi Malaysia, Johor, Malaysia
- Enzyme Technology and Green Synthesis Group, Universiti Teknologi Malaysia, Johor, Malaysia
| | - Azzmer Azzar Abdul Hamid
- Research Unit for Bioinformatics and Computational Biology (RUBIC), Kulliyyah of Science, International Islamic University Malaysia (IIUM), Kuantan, Pahang, Malaysia
| | - Khairul Bariyyah Abd Halim
- Research Unit for Bioinformatics and Computational Biology (RUBIC), Kulliyyah of Science, International Islamic University Malaysia (IIUM), Kuantan, Pahang, Malaysia
| | - Yilmaz Kaya
- Department of Agricultural Biotechnology, Faculty of Agriculture, Ondokuz Mayis University, Samsun, Turkey
- Department of Biology, Faculty of Science, Kyrgyz-Turkish Manas University, Kyrgyzstan
| | - Mohamed Faraj Edbeib
- Department of Animal Production, Faculty of Agriculture, Baniwalid University, Baniwalid, Libya
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