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Gufe C, Jambwa P, Marumure J, Makuvara Z, Khunrae P, Kayoka-Kabongo PN. Are phenolic compounds produced during the enzymatic production of prebiotic xylooligosaccharides (XOS) beneficial: a review. JOURNAL OF ASIAN NATURAL PRODUCTS RESEARCH 2024; 26:867-882. [PMID: 38594834 DOI: 10.1080/10286020.2024.2328723] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2023] [Accepted: 03/05/2024] [Indexed: 04/11/2024]
Abstract
Phenolics produced during xylooligosaccharide production might inhibit xylanases and enhance the antioxidant and antimicrobial activities of XOS. The effects of phenolic compounds on xylanases may depend on the type and concentration of the compound, the plant biomass used, and the enzyme used. Understanding the effects of phenolic compounds on xylanases and their impact on XOS is critical for developing viable bioconversion of lignocellulosic biomass to XOS. Understanding the complex relationship between phenolic compounds and xylanases can lead to the development of strategies that improve the efficiency and cost-effectiveness of XOS manufacturing processes and optimise enzyme performance.
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Affiliation(s)
- Claudious Gufe
- Department of Veterinary Technical Services, Central Veterinary Laboratories, Borrowdale Road, Harare, Zimbabwe
| | - Prosper Jambwa
- Department of Veterinary Biosciences, Faculty of Veterinary Science, University of Zimbabwe, Mount Pleasant, Harare, Zimbabwe
| | - Jerikias Marumure
- School of Natural Sciences, Great Zimbabwe University, Masvingo, Zimbabwe
| | - Zakio Makuvara
- School of Natural Sciences, Great Zimbabwe University, Masvingo, Zimbabwe
| | - Pongsak Khunrae
- Department of Microbiology, Faculty of Science, King Mongkut's University of Technology Thonburi (KMUTT), Bang Mod, Thung Khru, Bangkok, Thailand
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Theobald S, Vesth TC, Geib E, Nybo JL, Frisvad JC, Larsen TO, Kuo A, LaButti K, Lyhne EK, Kjærbølling I, Ledsgaard L, Barry K, Clum A, Chen C, Nolan M, Sandor L, Lipzen A, Mondo S, Pangilinan J, Salamov A, Riley R, Wiebenga A, Müller A, Kun RS, dos Santos Gomes AC, Henrissat B, Magnuson JK, Simmons BA, Mäkelä MR, Mortensen UH, Grigoriev IV, Brock M, Baker SE, de Vries RP, Andersen MR. Genomic Analysis of Aspergillus Section Terrei Reveals a High Potential in Secondary Metabolite Production and Plant Biomass Degradation. J Fungi (Basel) 2024; 10:507. [PMID: 39057392 PMCID: PMC11278011 DOI: 10.3390/jof10070507] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2024] [Revised: 07/17/2024] [Accepted: 07/18/2024] [Indexed: 07/28/2024] Open
Abstract
Aspergillus terreus has attracted interest due to its application in industrial biotechnology, particularly for the production of itaconic acid and bioactive secondary metabolites. As related species also seem to possess a prosperous secondary metabolism, they are of high interest for genome mining and exploitation. Here, we present draft genome sequences for six species from Aspergillus section Terrei and one species from Aspergillus section Nidulantes. Whole-genome phylogeny confirmed that section Terrei is monophyletic. Genome analyses identified between 70 and 108 key secondary metabolism genes in each of the genomes of section Terrei, the highest rate found in the genus Aspergillus so far. The respective enzymes fall into 167 distinct families with most of them corresponding to potentially unique compounds or compound families. Moreover, 53% of the families were only found in a single species, which supports the suitability of species from section Terrei for further genome mining. Intriguingly, this analysis, combined with heterologous gene expression and metabolite identification, suggested that species from section Terrei use a strategy for UV protection different to other species from the genus Aspergillus. Section Terrei contains a complete plant polysaccharide degrading potential and an even higher cellulolytic potential than other Aspergilli, possibly facilitating additional applications for these species in biotechnology.
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Affiliation(s)
- Sebastian Theobald
- Department of Biotechnology and Bioengineering, Technical University of Denmark, 2800 Kongens Lyngby, Denmark; (S.T.); (T.C.V.); (J.L.N.); (J.C.F.); (T.O.L.); (E.K.L.); (I.K.); (L.L.); (B.H.); (U.H.M.)
| | - Tammi C. Vesth
- Department of Biotechnology and Bioengineering, Technical University of Denmark, 2800 Kongens Lyngby, Denmark; (S.T.); (T.C.V.); (J.L.N.); (J.C.F.); (T.O.L.); (E.K.L.); (I.K.); (L.L.); (B.H.); (U.H.M.)
| | - Elena Geib
- School of Life Sciences, University of Nottingham, Nottingham NG7 2RD, UK; (E.G.); (M.B.)
| | - Jane L. Nybo
- Department of Biotechnology and Bioengineering, Technical University of Denmark, 2800 Kongens Lyngby, Denmark; (S.T.); (T.C.V.); (J.L.N.); (J.C.F.); (T.O.L.); (E.K.L.); (I.K.); (L.L.); (B.H.); (U.H.M.)
| | - Jens C. Frisvad
- Department of Biotechnology and Bioengineering, Technical University of Denmark, 2800 Kongens Lyngby, Denmark; (S.T.); (T.C.V.); (J.L.N.); (J.C.F.); (T.O.L.); (E.K.L.); (I.K.); (L.L.); (B.H.); (U.H.M.)
| | - Thomas O. Larsen
- Department of Biotechnology and Bioengineering, Technical University of Denmark, 2800 Kongens Lyngby, Denmark; (S.T.); (T.C.V.); (J.L.N.); (J.C.F.); (T.O.L.); (E.K.L.); (I.K.); (L.L.); (B.H.); (U.H.M.)
| | - Alan Kuo
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; (A.K.); (K.L.); (K.B.); (A.C.); (C.C.); (M.N.); (L.S.); (A.L.); (S.M.); (J.P.); (A.S.); (R.R.); (I.V.G.)
| | - Kurt LaButti
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; (A.K.); (K.L.); (K.B.); (A.C.); (C.C.); (M.N.); (L.S.); (A.L.); (S.M.); (J.P.); (A.S.); (R.R.); (I.V.G.)
| | - Ellen K. Lyhne
- Department of Biotechnology and Bioengineering, Technical University of Denmark, 2800 Kongens Lyngby, Denmark; (S.T.); (T.C.V.); (J.L.N.); (J.C.F.); (T.O.L.); (E.K.L.); (I.K.); (L.L.); (B.H.); (U.H.M.)
| | - Inge Kjærbølling
- Department of Biotechnology and Bioengineering, Technical University of Denmark, 2800 Kongens Lyngby, Denmark; (S.T.); (T.C.V.); (J.L.N.); (J.C.F.); (T.O.L.); (E.K.L.); (I.K.); (L.L.); (B.H.); (U.H.M.)
| | - Line Ledsgaard
- Department of Biotechnology and Bioengineering, Technical University of Denmark, 2800 Kongens Lyngby, Denmark; (S.T.); (T.C.V.); (J.L.N.); (J.C.F.); (T.O.L.); (E.K.L.); (I.K.); (L.L.); (B.H.); (U.H.M.)
| | - Kerrie Barry
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; (A.K.); (K.L.); (K.B.); (A.C.); (C.C.); (M.N.); (L.S.); (A.L.); (S.M.); (J.P.); (A.S.); (R.R.); (I.V.G.)
| | - Alicia Clum
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; (A.K.); (K.L.); (K.B.); (A.C.); (C.C.); (M.N.); (L.S.); (A.L.); (S.M.); (J.P.); (A.S.); (R.R.); (I.V.G.)
| | - Cindy Chen
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; (A.K.); (K.L.); (K.B.); (A.C.); (C.C.); (M.N.); (L.S.); (A.L.); (S.M.); (J.P.); (A.S.); (R.R.); (I.V.G.)
| | - Matt Nolan
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; (A.K.); (K.L.); (K.B.); (A.C.); (C.C.); (M.N.); (L.S.); (A.L.); (S.M.); (J.P.); (A.S.); (R.R.); (I.V.G.)
| | - Laura Sandor
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; (A.K.); (K.L.); (K.B.); (A.C.); (C.C.); (M.N.); (L.S.); (A.L.); (S.M.); (J.P.); (A.S.); (R.R.); (I.V.G.)
| | - Anna Lipzen
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; (A.K.); (K.L.); (K.B.); (A.C.); (C.C.); (M.N.); (L.S.); (A.L.); (S.M.); (J.P.); (A.S.); (R.R.); (I.V.G.)
| | - Stephen Mondo
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; (A.K.); (K.L.); (K.B.); (A.C.); (C.C.); (M.N.); (L.S.); (A.L.); (S.M.); (J.P.); (A.S.); (R.R.); (I.V.G.)
| | - Jasmyn Pangilinan
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; (A.K.); (K.L.); (K.B.); (A.C.); (C.C.); (M.N.); (L.S.); (A.L.); (S.M.); (J.P.); (A.S.); (R.R.); (I.V.G.)
| | - Asaf Salamov
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; (A.K.); (K.L.); (K.B.); (A.C.); (C.C.); (M.N.); (L.S.); (A.L.); (S.M.); (J.P.); (A.S.); (R.R.); (I.V.G.)
| | - Robert Riley
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; (A.K.); (K.L.); (K.B.); (A.C.); (C.C.); (M.N.); (L.S.); (A.L.); (S.M.); (J.P.); (A.S.); (R.R.); (I.V.G.)
| | - Ad Wiebenga
- Fungal Physiology, Westerdijk Fungal Biodiversity Institute and Fungal Molecular Physiology, Utrecht University, 3584 Utrecht, The Netherlands; (A.W.); (A.M.); (R.S.K.); (A.C.d.S.G.)
| | - Astrid Müller
- Fungal Physiology, Westerdijk Fungal Biodiversity Institute and Fungal Molecular Physiology, Utrecht University, 3584 Utrecht, The Netherlands; (A.W.); (A.M.); (R.S.K.); (A.C.d.S.G.)
| | - Roland S. Kun
- Fungal Physiology, Westerdijk Fungal Biodiversity Institute and Fungal Molecular Physiology, Utrecht University, 3584 Utrecht, The Netherlands; (A.W.); (A.M.); (R.S.K.); (A.C.d.S.G.)
| | - Ana Carolina dos Santos Gomes
- Fungal Physiology, Westerdijk Fungal Biodiversity Institute and Fungal Molecular Physiology, Utrecht University, 3584 Utrecht, The Netherlands; (A.W.); (A.M.); (R.S.K.); (A.C.d.S.G.)
| | - Bernard Henrissat
- Department of Biotechnology and Bioengineering, Technical University of Denmark, 2800 Kongens Lyngby, Denmark; (S.T.); (T.C.V.); (J.L.N.); (J.C.F.); (T.O.L.); (E.K.L.); (I.K.); (L.L.); (B.H.); (U.H.M.)
- Department of Biological Sciences, King Abdulaziz University, Jeddah 21589, Saudi Arabia
| | - Jon K. Magnuson
- Environmental Molecular Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA; (J.K.M.); (B.A.S.)
- US Department of Energy Joint Bioenergy Institute, 5885 Hollis St., Emeryville, CA 94608, USA
| | - Blake A. Simmons
- Environmental Molecular Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA; (J.K.M.); (B.A.S.)
- Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - Miia R. Mäkelä
- Department of Microbiology, University of Helsinki, Viikinkaari 9, 00014 Helsinki, Finland;
| | - Uffe H. Mortensen
- Department of Biotechnology and Bioengineering, Technical University of Denmark, 2800 Kongens Lyngby, Denmark; (S.T.); (T.C.V.); (J.L.N.); (J.C.F.); (T.O.L.); (E.K.L.); (I.K.); (L.L.); (B.H.); (U.H.M.)
| | - Igor V. Grigoriev
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; (A.K.); (K.L.); (K.B.); (A.C.); (C.C.); (M.N.); (L.S.); (A.L.); (S.M.); (J.P.); (A.S.); (R.R.); (I.V.G.)
- Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA 94720, USA
| | - Matthias Brock
- School of Life Sciences, University of Nottingham, Nottingham NG7 2RD, UK; (E.G.); (M.B.)
| | - Scott E. Baker
- Environmental Molecular Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA; (J.K.M.); (B.A.S.)
- US Department of Energy Joint Bioenergy Institute, 5885 Hollis St., Emeryville, CA 94608, USA
| | - Ronald P. de Vries
- Fungal Physiology, Westerdijk Fungal Biodiversity Institute and Fungal Molecular Physiology, Utrecht University, 3584 Utrecht, The Netherlands; (A.W.); (A.M.); (R.S.K.); (A.C.d.S.G.)
| | - Mikael R. Andersen
- Department of Biotechnology and Bioengineering, Technical University of Denmark, 2800 Kongens Lyngby, Denmark; (S.T.); (T.C.V.); (J.L.N.); (J.C.F.); (T.O.L.); (E.K.L.); (I.K.); (L.L.); (B.H.); (U.H.M.)
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Flores AC, Kimiko Kadowaki M, da Conceição Silva JL, de Andrade Bianchini I, de Almeida Felipe MDG, Sene L. Enzymatic potential of endophytic fungi: xylanase production by Colletotrichum boninense from sugarcane biomass. Braz J Microbiol 2023; 54:2705-2718. [PMID: 37735300 PMCID: PMC10689674 DOI: 10.1007/s42770-023-01131-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2023] [Accepted: 09/13/2023] [Indexed: 09/23/2023] Open
Abstract
Endophytic fungi constitute a major part of the still unexplored fungal diversity and have gained interest as new biological sources of natural active compounds, including enzymes. Endophytic fungi were isolated from soybean leaves and initially screened on agar plates for the production of CMCase (carboxymethylcellulase), xylanase, amylase and protease. The highest Enzymatic Indexes (IE) were verified for xylanase (2.14 and 1.31) with the fungi M6-A6P5F2 and M12-A5P3F1.2 and CMCase (1.92 and 1.62) with the fungi M13-A9P2F1 and M12-A5P3F1.2, respectively. The production of xylanase and CMCase by the selected fungi was evaluated in submerged cultivation using beechwood xylan and carboxymethylcellulose (CMC), as well as sugarcane straw and bagasse in different ratios as carbon sources. Both types of lignocellulosic biomass proved to be good inducers of enzymatic activity. The best xylanase producer among the isolates was identified as Colletotrichum boninense. With this fungus, the highest xylanase activity was obtained with a sugarcane straw-bagasse mixture in a 50:50 ratio (383.63 U mL-1), a result superior to that obtained with the use of beechwood xylan (296.65 U mL-1). Regardingthe kinetic behavior of the crude xylanase, there was found optimal pH of 5.0 and optimal temperatures of 50°C and 60°C. At 40°C and 50°C, xylanase retained 87% and 76% of its initial catalytic activity, respectively. These results bring new perspectives on bioprospecting endophytic fungi for the production of enzymes, mainly xylanase, as well as the exploitation of agro-industrial by-products, such as sugarcane straw and bagasse.
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Affiliation(s)
- Andressa Caroline Flores
- Center of Exact and Technological Sciences, State University of West Paraná, Cascavel, Paraná, Brazil.
| | - Marina Kimiko Kadowaki
- Center of Medical and Pharmaceutical Sciences, State University of West Paraná, Cascavel, Paraná, Brazil
| | | | | | | | - Luciane Sene
- Center of Exact and Technological Sciences, State University of West Paraná, Cascavel, Paraná, Brazil
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de Camargo BR, Takematsu HM, Ticona ARP, da Silva LA, Silva FL, Quirino BF, Hamann PRV, Noronha EF. Penicillium polonicum a new isolate obtained from Cerrado soil as a source of carbohydrate-active enzymes produced in response to sugarcane bagasse. 3 Biotech 2022; 12:348. [PMID: 36386566 PMCID: PMC9652181 DOI: 10.1007/s13205-022-03405-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2022] [Accepted: 09/30/2022] [Indexed: 11/13/2022] Open
Abstract
Penicillium species have been studied as producers of plant cell wall degrading enzymes to deconstruct agricultural residues and to be applied in industrial processes. Natural environments containing decaying plant matter are ideal places for isolating fungal strains with cellulolytic and xylanolytic activities. In the present study, Cerrado soil samples were used as source of filamentous fungi able to degrade xylan and cellulose. Penicillium was the most abundant genus among the obtained xylan and carboxymethylcellulose degraders. Penicillium polonicum was one of the best enzyme producers in agar-plate assays. In addition, it secretes CMCase, Avicelase, pectinase, mannanase, and xylanase during growth in liquid media containing sugarcane bagasse as carbon source. The highest value for endo-β-1,4-xylanase activity was obtained after 4 days of growth. Xyl PP, a 20 kDa endo-β-1,4-xylanase, was purified and partially characterized. The purified enzyme presented the remarkable feature of being resistant to the lignin-derived phenolic compounds, p-coumaric and trans-ferulic acids. This feature calls for its further use in bioprocesses that use lignocellulose as feedstock. Furthermore, future work should explore its structural features which may contribute to the understanding of the relationship between its structure and resistance to phenolic compounds. Supplementary Information The online version contains supplementary material available at 10.1007/s13205-022-03405-x.
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Affiliation(s)
- Brenda Rabelo de Camargo
- Department of Cell Biology, Institute of Biological Sciences, University of Brasilia, Brasilia, DF 70910-900 Brazil
| | - Hamille Mey Takematsu
- Department of Cell Biology, Institute of Biological Sciences, University of Brasilia, Brasilia, DF 70910-900 Brazil
| | - Alonso R. Poma Ticona
- Department of Cell Biology, Institute of Biological Sciences, University of Brasilia, Brasilia, DF 70910-900 Brazil
| | - Leonardo Assis da Silva
- Department of Cell Biology, Institute of Biological Sciences, University of Brasilia, Brasilia, DF 70910-900 Brazil
| | - Francilene Lopes Silva
- Department of Cell Biology, Institute of Biological Sciences, University of Brasilia, Brasilia, DF 70910-900 Brazil
| | - Betania Ferraz Quirino
- Embrapa-Agroenergia, Genetics and Biotechnology Laboratory, Brasilia, DF 70770-901 Brazil
| | - Pedro R. Vieira Hamann
- Department of Cell Biology, Institute of Biological Sciences, University of Brasilia, Brasilia, DF 70910-900 Brazil
| | - Eliane Ferreira Noronha
- Department of Cell Biology, Institute of Biological Sciences, University of Brasilia, Brasilia, DF 70910-900 Brazil
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Zhai R, Hu J, Jin M. Towards efficient enzymatic saccharification of pretreated lignocellulose: Enzyme inhibition by lignin-derived phenolics and recent trends in mitigation strategies. Biotechnol Adv 2022; 61:108044. [PMID: 36152893 DOI: 10.1016/j.biotechadv.2022.108044] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2022] [Revised: 08/24/2022] [Accepted: 09/19/2022] [Indexed: 01/01/2023]
Abstract
Lignocellulosic biorefinery based on its sugar-platform has been considered as an efficient strategy to replace fossil fuel-based refinery. In the bioconversion process, pretreatment is an essential step to firstly open up lignocellulose cell wall structure and enhance the accessibility of carbohydrates to hydrolytic enzymes. However, various lignin and/or carbohydrates degradation products (e.g. phenolics, 5-hydroxymethylfurfural, furfural) also generated during pretreatment, which severely inhibit the following enzymatic hydrolysis and the downstream fermentation process. Among them, the lignin derived phenolics have been considered as the most inhibitory compounds and their inhibitory effects are highly dependent on the source of biomass and the type of pretreatment strategy. Although liquid-solid separation and subsequent washing can remove the lignin derived phenolics and other inhibitors, this is undesirable in the realistic industrial application where the whole slurry of pretreated biomass need to be directly used in the hydrolysis process. This review summarizes the phenolics formation mechanism for various commonly applied pretreatment methods and discusses the key factors that affect the inhibitory effect of phenolics on cellulose hydrolysis. In addition, the recent achievements on the rational design of inhibition mitigation strategies to boost cellulose hydrolysis for sugar-platform biorefinery are also introduced. This review also provides guidance for rational design detoxification strategies to facilitate whole slurry hydrolysis which helps to realize the industrialization of lignocellulose biorefinery.
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Affiliation(s)
- Rui Zhai
- School of Environmental and Biological Engineering, Nanjing University of Science and Technology, 200 Xiaolingwei Street, Nanjing 210094, China
| | - Jianguang Hu
- Department of Chemical and Petroleum Engineering, University of Calgary, Calgary T2N 1N4, Canada
| | - Mingjie Jin
- School of Environmental and Biological Engineering, Nanjing University of Science and Technology, 200 Xiaolingwei Street, Nanjing 210094, China.
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Garrido MM, Piccinni FE, Landoni M, Peña MJ, Topalian J, Couto A, Wirth SA, Urbanowicz BR, Campos E. Insights into the xylan degradation system of Cellulomonas sp. B6: biochemical characterization of rCsXyn10A and rCsAbf62A. Appl Microbiol Biotechnol 2022; 106:5035-5049. [PMID: 35799069 DOI: 10.1007/s00253-022-12061-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2022] [Revised: 06/21/2022] [Accepted: 06/26/2022] [Indexed: 11/29/2022]
Abstract
Valorization of the hemicellulose fraction of plant biomass is crucial for the sustainability of lignocellulosic biorefineries. The Cellulomonas genus comprises Gram-positive Actinobacteria that degrade cellulose and other polysaccharides by secreting a complex array of enzymes. In this work, we studied the specificity and synergy of two enzymes, CsXyn10A and CsAbf62A, which were identified as highly abundant in the extracellular proteome of Cellulomonas sp. B6 when grown on wheat bran. To explore their potential for bioprocessing, the recombinant enzymes were expressed and their activities were thoroughly characterized. rCsXyn10A is a GH10 endo-xylanase (EC 3.2.1.8), active across a broad pH range (5 to 9), at temperatures up to 55 °C. rCsAbf62A is an α-L-arabinofuranosidase (ABF) (EC 3.2.1.55) that specifically removes α-1,2 and α-1,3-L-arabinosyl substituents from arabino-xylo-oligosaccharides (AXOS), xylan, and arabinan backbones, but it cannot act on double-substituted residues. It also has activity on pNPA. No differences were observed regarding activity when CsAbf62A was expressed with its appended CBM13 module or only the catalytic domain. The amount of xylobiose released from either wheat arabinoxylan or arabino-xylo-oligosaccharides increased significantly when rCsXyn10A was supplemented with rCsAbf62A, indicating that the removal of arabinosyl residues by rCsAbf62A improved rCsXyn10A accessibility to β-1,4-xylose linkages, but no synergism was observed in the deconstruction of wheat bran. These results contribute to designing tailor-made, substrate-specific, enzymatic cocktails for xylan valorization. KEY POINTS: • rCsAbf62A removes α-1,2 and α-1,3-L-arabinosyl substituents from arabino-xylo-oligosaccharides, xylan, and arabinan backbones. • The appended CBM13 of rCsAbf62A did not affect the specific activity of the enzyme. • Supplementation of rCsXyn10A with rCsAbf62A improves the degradation of AXOS and xylan.
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Affiliation(s)
- Mercedes María Garrido
- Instituto de Agrobiotecnología y Biología Molecular (IABIMO), CICVyA, Instituto Nacional de Tecnología Agropecuaria (INTA)- CONICET, Los Reseros y Nicolás Repetto S/N (1686), Hurlingham, Buenos Aires, Argentina.,Laboratorio de Agrobiotecnología, DFBMC- FCEN and Instituto de Biodiversidad y Biología Experimental y Aplicada (IBBEA) CONICET- Universidad de Buenos Aires (UBA), Pab. II, Ciudad Universitaria, C1428EG, Buenos Aires, Argentina
| | - Florencia Elizabeth Piccinni
- Instituto de Agrobiotecnología y Biología Molecular (IABIMO), CICVyA, Instituto Nacional de Tecnología Agropecuaria (INTA)- CONICET, Los Reseros y Nicolás Repetto S/N (1686), Hurlingham, Buenos Aires, Argentina.,Laboratorio de Agrobiotecnología, DFBMC- FCEN and Instituto de Biodiversidad y Biología Experimental y Aplicada (IBBEA) CONICET- Universidad de Buenos Aires (UBA), Pab. II, Ciudad Universitaria, C1428EG, Buenos Aires, Argentina
| | - Malena Landoni
- Centro de Investigación en Hidratos de Carbono (CIHIDECAR)- CONICET, Departamento de Química Orgánica, FCEN- Universidad de Buenos Aires (UBA), Pab. II, Ciudad Universitaria, C1428EG, Buenos Aires, Argentina
| | - María Jesús Peña
- Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA, USA
| | - Juliana Topalian
- Instituto de Agrobiotecnología y Biología Molecular (IABIMO), CICVyA, Instituto Nacional de Tecnología Agropecuaria (INTA)- CONICET, Los Reseros y Nicolás Repetto S/N (1686), Hurlingham, Buenos Aires, Argentina
| | - Alicia Couto
- Centro de Investigación en Hidratos de Carbono (CIHIDECAR)- CONICET, Departamento de Química Orgánica, FCEN- Universidad de Buenos Aires (UBA), Pab. II, Ciudad Universitaria, C1428EG, Buenos Aires, Argentina
| | - Sonia Alejandra Wirth
- Laboratorio de Agrobiotecnología, DFBMC- FCEN and Instituto de Biodiversidad y Biología Experimental y Aplicada (IBBEA) CONICET- Universidad de Buenos Aires (UBA), Pab. II, Ciudad Universitaria, C1428EG, Buenos Aires, Argentina
| | - Breeanna Rae Urbanowicz
- Department of Biochemistry and Molecular Biology, University of Georgia, 315 Riverbend Road, Athens, GA, USA
| | - Eleonora Campos
- Instituto de Agrobiotecnología y Biología Molecular (IABIMO), CICVyA, Instituto Nacional de Tecnología Agropecuaria (INTA)- CONICET, Los Reseros y Nicolás Repetto S/N (1686), Hurlingham, Buenos Aires, Argentina.
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7
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Structural and biochemical analysis reveals how ferulic acid improves catalytic efficiency of Humicola grisea xylanase. Sci Rep 2022; 12:11409. [PMID: 35794132 PMCID: PMC9259647 DOI: 10.1038/s41598-022-15175-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2022] [Accepted: 06/20/2022] [Indexed: 11/13/2022] Open
Abstract
Humicolagrisea var. thermoidea is an aerobic and thermophilic fungus that secretes the GH11 xylanase HXYN2 in the presence of sugarcane bagasse. In this study, HXYN2 was expressed in Pichiapastoris and characterized biochemically and structurally in the presence of beechwood xylan substrate and ferulic acid (FA). HXYN2 is a thermally stable protein, as indicated by circular dichroism, with greater activity in the range of 40–50 °C and pH 5.0–9.0, with optimal temperature and pH of 50 °C and 6.0, respectively. FA resulted in a 75% increase in enzyme activity and a 2.5-fold increase in catalytic velocity, catalytic efficiency, and catalytic rate constant (kcat), with no alteration in enzyme affinity for the substrate. Fluorescence quenching indicated that FA forms a complex with HXYN2 interacting with solvent-exposed tryptophan residues. The binding constants ranged from moderate (pH 7.0 and 9.0) to strong (pH 4.0) affinity. Isothermal titration calorimetry, structural models and molecular docking suggested that hydrogen bonds and hydrophobic interactions occur in the aglycone region inducing conformational changes in the active site driven by initial and final enthalpy- and entropy processes, respectively. These results indicate a potential for biotechnological application for HXYN2, such as in the bioconversion of plant residues rich in ferulic acid.
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8
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Paecilomyces variotii xylanase production, purification and characterization with antioxidant xylo-oligosaccharides production. Sci Rep 2021; 11:16468. [PMID: 34389757 PMCID: PMC8363652 DOI: 10.1038/s41598-021-95965-w] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2021] [Accepted: 07/22/2021] [Indexed: 02/07/2023] Open
Abstract
Paecilomyces variotii xylanase was, produced in stirred tank bioreactor with yield of 760 U/mL and purified using 70% ammonium sulfate precipitation and ultra-filtration causing 3.29-fold purification with 34.47% activity recovery. The enzyme purity was analyzed on sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) confirming its monomeric nature as single band at 32 KDa. Zymography showed xylan hydrolysis activity at the same band. The purified enzyme had optimum activity at 60 °C and pH 5.0. The pH stability range was 5-9 and the temperature stability was up 70 °C. Fe2+and Fe3+ exhibited inhibition of xylanase enzyme while Cu2+, Ca2+, Mg2+ and Mn2+ stimulated its activity. Mercaptoethanol stimulated its activity; however, Na2-EDTA and SDS inhibited its activity. The purified xylanase could hydrolyze beechwood xylan but not carboxymethyl cellulose (CMC), avicel or soluble starch. Paecilomyces variotii xylanase Km and Vmax for beechwood were determined to be 3.33 mg/mL and 5555 U/mg, respectively. The produced xylanase enzyme applied on beech xylan resulted in different types of XOS. The antioxidant activity of xylo-oligosaccharides increased from 15.22 to 70.57% when the extract concentration was increased from 0.1 to 1.5 mg/mL. The enzyme characteristics and kinetic parameters indicated its high efficiency in the hydrolysis of xylan and its potential effectiveness in lignocellulosic hydrolysis and other industrial application. It also suggests the potential of xylanase enzyme for production of XOS from biomass which are useful in food and pharmaceutical industries.
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9
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Xylooligosaccharides production by crude and partially purified xylanase from Aureobasidium pullulans: Biochemical and thermodynamic properties of the enzymes and their application in xylan hydrolysis. Process Biochem 2021. [DOI: 10.1016/j.procbio.2021.03.009] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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10
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da Costa Maia I, Thomaz dos Santos D'Almeida C, Guimarães Freire DM, d'Avila Costa Cavalcanti E, Cameron LC, Furtado Dias J, Simões Larraz Ferreira M. Effect of solid-state fermentation over the release of phenolic compounds from brewer's spent grain revealed by UPLC-MSE. Lebensm Wiss Technol 2020. [DOI: 10.1016/j.lwt.2020.110136] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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11
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Corrêa CL, Midorikawa GEO, Filho EXF, Noronha EF, Alves GSC, Togawa RC, Silva-Junior OB, Costa MMDC, Grynberg P, Miller RNG. Transcriptome Profiling-Based Analysis of Carbohydrate-Active Enzymes in Aspergillus terreus Involved in Plant Biomass Degradation. Front Bioeng Biotechnol 2020; 8:564527. [PMID: 33123513 PMCID: PMC7573219 DOI: 10.3389/fbioe.2020.564527] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2020] [Accepted: 09/16/2020] [Indexed: 11/13/2022] Open
Abstract
Given the global abundance of plant biomass residues, potential exists in biorefinery-based applications with lignocellulolytic fungi. Frequently isolated from agricultural cellulosic materials, Aspergillus terreus is a fungus efficient in secretion of commercial enzymes such as cellulases, xylanases and phytases. In the context of biomass saccharification, lignocellulolytic enzyme secretion was analyzed in a strain of A. terreus following liquid culture with sugarcane bagasse (SB) (1% w/v) and soybean hulls (SH) (1% w/v) as sole carbon source, in comparison to glucose (G) (1% w/v). Analysis of the fungal secretome revealed a maximum of 1.017 UI.mL–1 xylanases after growth in minimal medium with SB, and 1.019 UI.mL–1 after incubation with SH as carbon source. The fungal transcriptome was characterized on SB and SH, with gene expression examined in comparison to equivalent growth on G as carbon source. Over 8000 genes were identified, including numerous encoding enzymes and transcription factors involved in the degradation of the plant cell wall, with significant expression modulation according to carbon source. Eighty-nine carbohydrate-active enzyme (CAZyme)-encoding genes were identified following growth on SB, of which 77 were differentially expressed. These comprised 78% glycoside hydrolases, 8% carbohydrate esterases, 2.5% polysaccharide lyases, and 11.5% auxiliary activities. Analysis of the glycoside hydrolase family revealed significant up-regulation for genes encoding 25 different GH family proteins, with predominance for families GH3, 5, 7, 10, and 43. For SH, from a total of 91 CAZyme-encoding genes, 83 were also significantly up-regulated in comparison to G. These comprised 80% glycoside hydrolases, 7% carbohydrate esterases, 5% polysaccharide lyases, 7% auxiliary activities (AA), and 1% glycosyltransferases. Similarly, within the glycoside hydrolases, significant up-regulation was observed for genes encoding 26 different GH family proteins, with predominance again for families GH3, 5, 10, 31, and 43. A. terreus is a promising species for production of enzymes involved in the degradation of plant biomass. Given that this fungus is also able to produce thermophilic enzymes, this first global analysis of the transcriptome following cultivation on lignocellulosic carbon sources offers considerable potential for the application of candidate genes in biorefinery applications.
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Affiliation(s)
- Camila L Corrêa
- Departamento de Biologia Celular, Universidade de Brasília, Campus Universitário Darcy Ribeiro, Brasília, Brazil
| | - Glaucia E O Midorikawa
- Departamento de Biologia Celular, Universidade de Brasília, Campus Universitário Darcy Ribeiro, Brasília, Brazil
| | | | - Eliane Ferreira Noronha
- Departamento de Biologia Celular, Universidade de Brasília, Campus Universitário Darcy Ribeiro, Brasília, Brazil
| | - Gabriel S C Alves
- Departamento de Biologia Celular, Universidade de Brasília, Campus Universitário Darcy Ribeiro, Brasília, Brazil
| | - Roberto Coiti Togawa
- Embrapa Recursos Genéticos e Biotecnologia, Parque Estação Biológica - PqEB, Brasília, Brazil
| | | | | | - Priscila Grynberg
- Embrapa Recursos Genéticos e Biotecnologia, Parque Estação Biológica - PqEB, Brasília, Brazil
| | - Robert N G Miller
- Departamento de Biologia Celular, Universidade de Brasília, Campus Universitário Darcy Ribeiro, Brasília, Brazil
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12
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Oliveira MCLD, Paulo AJ, Lima CDA, de Lima Filho JL, Souza-Motta CM, Vidal EE, Nascimento TP, Marques DDAV, Porto ALF. Lovastatin producing by wild strain of Aspergillus terreus isolated from Brazil. Prep Biochem Biotechnol 2020; 51:164-172. [PMID: 32795118 DOI: 10.1080/10826068.2020.1805624] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
Lovastatin is a drug in the statin class which acts as a natural inhibitor of 3-hydroxy-3-methylglutaryl, a coenzyme reductase reported as being a potential therapeutic agent for several diseases: Alzheimer's, multiple sclerosis, osteoporosis and due to its anti-cancer properties. Aspergillus terreus is known for producing a cholesterol reducing drug. This study sets out to evaluate the production of lovastatin by Brazilian wild strains of A. terreus isolated from a biological sample and natural sources. Carbon and nitrogen sources and the best physicochemical conditions using factorial design were also evaluated. The 37 fungal were grown to produce lovastatin by submerged fermentation. A. terreus URM5579 strain was the best lovastatin producer with a level of 13.96 mg/L. Soluble starch and soybean flour were found to be the most suitable substrates for producing lovastatin (41.23 mg/L) and biomass (6.1 mg/mL). The most favorable production conditions were found in run 16 with 60 g/L soluble starch, 15 g/L soybean flour, pH 7.5, 200 rpm and maintaining the solution at 32 °C for 7 days, which led to producing 100.86 mg/L of lovastatin and 17.68 mg/mL of biomass. Using natural strains and economically viable substrates helps to optimize the production of lovastatin and promote its use.
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Affiliation(s)
- Marcella Cardoso Lemos de Oliveira
- Department of Morphology and Animal Physiology, Federal Rural University of Pernambuco (UFRPE), Recife, Brazil
- Laboratory of Immunopathology Keizo Asami (LIKA), Federal University of Pernambuco (UFPE), Recife, Brazil
| | - Anderson José Paulo
- Laboratory of Immunopathology Keizo Asami (LIKA), Federal University of Pernambuco (UFPE), Recife, Brazil
| | | | - José Luiz de Lima Filho
- Laboratory of Immunopathology Keizo Asami (LIKA), Federal University of Pernambuco (UFPE), Recife, Brazil
| | | | - Esteban Espinosa Vidal
- Central Analytical, Northeastern Center of Strategic Technologies (CETENE), Recife, Brazil
| | - Thiago Pajeú Nascimento
- Department of Morphology and Animal Physiology, Federal Rural University of Pernambuco (UFRPE), Recife, Brazil
| | - Daniela de Araújo Viana Marques
- Laboratory of Biotechnology Applied to Infectious and Parasitic Diseases, Biological Science Institute, University of Pernambuco-ICB/UPE, Recife, Brazil
| | - Ana Lucia Figueiredo Porto
- Department of Morphology and Animal Physiology, Federal Rural University of Pernambuco (UFRPE), Recife, Brazil
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13
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Hamann PR, Gomes TC, de M.B.Silva L, Noronha EF. Influence of lignin-derived phenolic compounds on the Clostridium thermocellum endo-β-1,4-xylanase XynA. Process Biochem 2020. [DOI: 10.1016/j.procbio.2020.02.034] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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14
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Somboon C, Boonrung S, Katekaew S, Ekprasert J, Aimi T, Boonlue S. Purification and characterization of low molecular weight alkali stable xylanase from Neosartorya spinosa UZ-2-11. MYCOSCIENCE 2020. [DOI: 10.1016/j.myc.2020.01.004] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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15
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Xue D, Zeng X, Lin D, Yao S. Thermostable ethanol tolerant xylanase from a cold-adapted marine species Acinetobacter johnsonii. Chin J Chem Eng 2019. [DOI: 10.1016/j.cjche.2018.06.019] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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16
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Ullah SF, Souza AA, Hamann PRV, Ticona ARP, Oliveira GM, Barbosa JARG, Freitas SM, Noronha EF. Structural and functional characterisation of xylanase purified from Penicillium chrysogenum produced in response to raw agricultural waste. Int J Biol Macromol 2019; 127:385-395. [PMID: 30654038 DOI: 10.1016/j.ijbiomac.2019.01.057] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2018] [Revised: 12/28/2018] [Accepted: 01/11/2019] [Indexed: 11/29/2022]
Abstract
Commercial interest in plant cell wall degrading enzymes (PCWDE) is motivated by their potential for energy or bioproduct generation that reduced dependency on non-renewable (fossil-derived) feedstock. Therefore, underlying work analysed the Penicillium chrysogenum isolate for PCWDE production by employing different biomass as a carbon source. Among the produced enzymes, three xylanase isoforms were observed in the culture filtrate containing sugarcane bagasse. Xylanase (PcX1) presenting 35 kDa molecular mass was purified by gel filtration and anion exchange chromatography. Unfolding was probed and analysed using fluorescence, circular dichroism and enzyme assay methods. Secondary structure contents were estimated by circular dichroism 45% α-helix and 10% β-sheet, consistent with the 3D structure predicted by homology. PcX1 optimally active at pH 5.0 and 30 °C, presenting t1/2 19 h at 30 °C and 6 h at 40 °C. Thermodynamic parameters/melting temperature 51.4 °C confirmed the PcX1 stability at pH 5.0. PcX1 have a higher affinity for oat spelt xylan, KM 1.2 mg·mL-1, in comparison to birchwood xylan KM 29.86 mg·mL-1, activity was inhibited by Cu+2 and activated by Zn+2. PcX1 exhibited significant tolerance for vanillin, trans-ferulic acid, ρ-coumaric acid, syringaldehyde and 4-hydroxybenzoic acid, activity slightly inhibited (17%) by gallic and tannic acid.
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Affiliation(s)
- Sadia Fida Ullah
- Laboratory de Enzymology, Department of Cellular Biology, University of Brasilia, DF, Brazil
| | - Amanda Araújo Souza
- Laboratory of Molecular Biophysics, Department of Cellular Biology, University of Brasilia, DF, Brazil
| | - Pedro Ricardo V Hamann
- Laboratory de Enzymology, Department of Cellular Biology, University of Brasilia, DF, Brazil
| | - Alonso Roberto P Ticona
- Laboratory de Enzymology, Department of Cellular Biology, University of Brasilia, DF, Brazil
| | - Gideane M Oliveira
- Laboratory of Molecular Biophysics, Department of Cellular Biology, University of Brasilia, DF, Brazil
| | | | - Sonia M Freitas
- Laboratory of Molecular Biophysics, Department of Cellular Biology, University of Brasilia, DF, Brazil
| | - Eliane Ferreira Noronha
- Laboratory de Enzymology, Department of Cellular Biology, University of Brasilia, DF, Brazil.
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17
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de Almeida Antunes Ferraz JL, Oliveira Souza L, Gustavo de Araújo Fernandes A, Luiz Ferreira Oliveira M, de Oliveira JR, Franco M. Optimization of the solid-state fermentation conditions and characterization of xylanase produced by Penicillium roqueforti ATCC 10110 using yellow mombin residue (Spondias mombin L.). CHEM ENG COMMUN 2019. [DOI: 10.1080/00986445.2019.1572000] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
| | - Lucas Oliveira Souza
- Department of Exact Sciences and Natural, State University of Southwest Bahia (UESB), Itapetinga, Brazil
| | | | | | | | - Marcelo Franco
- Department of Exact Sciences and Technology, State University of Santa Cruz (UESC), Ilhéus, Brazil
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18
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Gupta PK, Choudhary S, Chandrananthi C, Sharon Eveline J, Sushmitha SP, Hiremath L, Srivastava AK, Narendra Kumar S. Fungal Biodiversity Producing Xylanase Enzymes Involved in Efficient Uses of Xylanolysis. Fungal Biol 2019. [DOI: 10.1007/978-3-030-23834-6_4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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19
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Xylanase from Aspergillus tamarii shows different kinetic parameters and substrate specificity in the presence of ferulic acid. Enzyme Microb Technol 2019; 120:16-22. [DOI: 10.1016/j.enzmictec.2018.09.009] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2018] [Revised: 09/11/2018] [Accepted: 09/26/2018] [Indexed: 11/20/2022]
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20
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Sharma S, Sharma V, Nargotra P, Bajaj BK. Process desired functional attributes of an endoxylanase of GH10 family from a new strain of Aspergillus terreus S9. Int J Biol Macromol 2018; 115:663-671. [DOI: 10.1016/j.ijbiomac.2018.04.096] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2017] [Revised: 04/14/2018] [Accepted: 04/18/2018] [Indexed: 10/17/2022]
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21
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Kumar V, Shukla P. Extracellular xylanase production from T. lanuginosus VAPS24 at pilot scale and thermostability enhancement by immobilization. Process Biochem 2018. [DOI: 10.1016/j.procbio.2018.05.019] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
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22
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Lopes A, Ferreira Filho E, Moreira L. An update on enzymatic cocktails for lignocellulose breakdown. J Appl Microbiol 2018; 125:632-645. [DOI: 10.1111/jam.13923] [Citation(s) in RCA: 93] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2017] [Revised: 03/20/2018] [Accepted: 05/14/2018] [Indexed: 12/01/2022]
Affiliation(s)
- A.M. Lopes
- Laboratory of Enzymology; Department of Cellular Biology; University of Brasília; Brasilia DF Brazil
| | - E.X. Ferreira Filho
- Laboratory of Enzymology; Department of Cellular Biology; University of Brasília; Brasilia DF Brazil
| | - L.R.S. Moreira
- Laboratory of Enzymology; Department of Cellular Biology; University of Brasília; Brasilia DF Brazil
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23
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Non-waste technology through the enzymatic hydrolysis of agro-industrial by-products. Trends Food Sci Technol 2018. [DOI: 10.1016/j.tifs.2018.05.013] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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24
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Optimization of Xylanase Production from Aspergillus foetidus in Soybean Residue. Enzyme Res 2018; 2018:6597017. [PMID: 29850226 PMCID: PMC5925104 DOI: 10.1155/2018/6597017] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2017] [Revised: 02/15/2018] [Accepted: 02/25/2018] [Indexed: 11/29/2022] Open
Abstract
Enzymatic hydrolysis is an important but expensive step in the process to obtain enzyme derived products. Thus, the production of efficient enzymes is of great interest for this biotechnological application. The production of xylanase by Aspergillus foetidus in soybean residues was optimized using 2 × 23 factorial designs. The experimental data was fitted into a polynomial model for xylanase activity. Statistical analyses of the results showed that variables pH and the interaction of pH and temperature had influenced the production of xylanase, with the best xylanase production level (13.98 U/mL) occurring at fermentation for 168 hours, pH 7.0, 28°C, and 120 rpm.
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25
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de Almeida Antunes Ferraz JL, Souza LO, Soares GA, Coutinho JP, de Oliveira JR, Aguiar-Oliveira E, Franco M. Enzymatic saccharification of lignocellulosic residues using cellulolytic enzyme extract produced by Penicillium roqueforti ATCC 10110 cultivated on residue of yellow mombin fruit. BIORESOURCE TECHNOLOGY 2018; 248:214-220. [PMID: 28669572 DOI: 10.1016/j.biortech.2017.06.048] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2017] [Revised: 06/08/2017] [Accepted: 06/09/2017] [Indexed: 06/07/2023]
Abstract
The aim of this work was to enzymatic saccharification of food waste was performed by crude enzymatic cellulolytic extract produced by P. roqueforti cultivated in yellow mombin residue. The best yield of reducing sugars (259.45mgg-1) was achieved with sugarcane bagasse after 4h; the hydrolysis of corn cob, rice husk and peanut hull resulted in yields around 128-180mgg-1. The addition of 10mmolL-1 of Mn2+ potentiated the saccharification of sugarcane bagasse, in about 86%. The temperature and substrate (sugarcane bagasse) concentration parameters were optimized using a Doehlert Design and, a maximum sugar yield of 662.34±26.72mgg-1 was achieved at 62.40°C, 0.22% (w/v) of substrate, with the addition of Mn2+. Sugar yield was significantly high when compared to previous studies available in scientific literature, suggesting the use of crude cellulolytic supplemented with Mn2+ an alternative and promising process for saccharification of sugarcane bagasse.
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Affiliation(s)
| | - Lucas Oliveira Souza
- Department of Exact Sciences and Natural, State University of Southwest Bahia (UESB), Postal Code: 45700-000 Itapetinga, Brazil
| | - Glêydison Amarante Soares
- Department of Exact Sciences and Technology, State University of Santa Cruz (UESC), Postal Code: 45654-370 Ilhéus, Brazil
| | - Janclei Pereira Coutinho
- Department of Exact Sciences and Technology, State University of Santa Cruz (UESC), Postal Code: 45654-370 Ilhéus, Brazil
| | - Julieta Rangel de Oliveira
- Department of Exact Sciences and Technology, State University of Santa Cruz (UESC), Postal Code: 45654-370 Ilhéus, Brazil
| | - Elizama Aguiar-Oliveira
- Department of Exact Sciences and Technology, State University of Santa Cruz (UESC), Postal Code: 45654-370 Ilhéus, Brazil
| | - Marcelo Franco
- Department of Exact Sciences and Technology, State University of Santa Cruz (UESC), Postal Code: 45654-370 Ilhéus, Brazil.
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26
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Xylan-hydrolyzing thermotolerant Candida tropicalis HNMA-1 for bioethanol production from sugarcane bagasse hydrolysate. ANN MICROBIOL 2017. [DOI: 10.1007/s13213-017-1292-0] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022] Open
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27
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Osiro KO, de Camargo BR, Satomi R, Hamann PRV, Silva JP, de Sousa MV, Quirino BF, Aquino EN, Felix CR, Murad AM, Noronha EF. Characterization of Clostridium thermocellum (B8) secretome and purified cellulosomes for lignocellulosic biomass degradation. Enzyme Microb Technol 2017; 97:43-54. [DOI: 10.1016/j.enzmictec.2016.11.002] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2016] [Revised: 11/04/2016] [Accepted: 11/05/2016] [Indexed: 11/16/2022]
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28
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Pérez-Rodríguez N, Moreira CD, Torrado Agrasar A, Domínguez JM. Feruloyl esterase production by Aspergillus terreus CECT 2808 and subsequent application to enzymatic hydrolysis. Enzyme Microb Technol 2016; 91:52-8. [PMID: 27444329 DOI: 10.1016/j.enzmictec.2016.05.011] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2016] [Revised: 05/26/2016] [Accepted: 05/31/2016] [Indexed: 11/18/2022]
Abstract
Ferulic acid esterases (FAE) were produced by Aspergillus terreus CECT 2808 from vine trimming shoots (VTS) and corn cob. Later, the fungal extracts thus obtained were used to enzymatically release ferulic acid (FA) from both substrates. Our findings showed a higher FAE activity in the enzymatic extracts produced on corn cob (0.070±0.004U/mL). Nevertheless, the enzymatic extracts produced on VTS demonstrated a better performance for FA release from both corn cob (2.05±0.01mg/g) and VTS (0.19±0.003mg/g). This result was probably because of the higher xylanase/FAE ratio determined in VTS extract. Therefore, an additional assay was carried out by supplementing corn cob extract with a commercial xylanase to test the influence of FAE/xylanase ratio in FA release. The results revealed the relevance of the FAE/xylanase ratio for an optimal FA release.
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Affiliation(s)
- N Pérez-Rodríguez
- Department of Chemical Engineering, Faculty of Sciences, University of Vigo (Campus Ourense), As Lagoas s/n, 32004 Ourense, SPAIN and Laboratory of Agro-food Biotechnology, CITI (University of Vigo)-Tecnópole, Parque Tecnológico de Galicia, San Cibrao das Viñas, 32900 Ourense, Spain
| | - C D Moreira
- Department of Chemical Engineering, Faculty of Sciences, University of Vigo (Campus Ourense), As Lagoas s/n, 32004 Ourense, SPAIN and Laboratory of Agro-food Biotechnology, CITI (University of Vigo)-Tecnópole, Parque Tecnológico de Galicia, San Cibrao das Viñas, 32900 Ourense, Spain; CEB-Centre of Biological Engineering, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal
| | - A Torrado Agrasar
- Bromatology Group, Department of Analytical and Food Chemistry, Faculty of Sciences, University of Vigo (Campus Ourense), As Lagoas s/n, 32004 Ourense, Spain
| | - J M Domínguez
- Department of Chemical Engineering, Faculty of Sciences, University of Vigo (Campus Ourense), As Lagoas s/n, 32004 Ourense, SPAIN and Laboratory of Agro-food Biotechnology, CITI (University of Vigo)-Tecnópole, Parque Tecnológico de Galicia, San Cibrao das Viñas, 32900 Ourense, Spain.
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Insights into the mechanism of enzymatic hydrolysis of xylan. Appl Microbiol Biotechnol 2016; 100:5205-14. [PMID: 27112349 DOI: 10.1007/s00253-016-7555-z] [Citation(s) in RCA: 89] [Impact Index Per Article: 11.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2016] [Revised: 04/11/2016] [Accepted: 04/14/2016] [Indexed: 01/06/2023]
Abstract
Hemicelluloses are a vast group of complex, non-cellulosic heteropolysaccharides that are classified according to the principal monosaccharides present in its structure. Xylan is the most abundant hemicellulose found in lignocellulosic biomass. In the current trend of a more effective utilization of lignocellulosic biomass and developments of environmentally friendly industrial processes, increasing research activities have been directed to a practical application of the xylan component of plants and plant residues as biopolymer resources. A variety of enzymes, including main- and side-chain acting enzymes, are responsible for xylan breakdown. Xylanase is a main-chain enzyme that randomly cleaves the β-1,4 linkages between the xylopyranosyl residues in xylan backbone. This enzyme presents varying folds, mechanisms of action, substrate specificities, hydrolytic activities, and physicochemical characteristics. This review pays particular attention to different aspects of the mechanisms of action of xylan-degrading enzymes and their contribution to improve the production of bioproducts from plant biomass. Furthermore, the influence of phenolic compounds on xylanase activity is also discussed.
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Jaramillo PMD, Andreaus J, Neto GPDS, Castro CFDS, Filho EXF. The characterization of a pectin-degrading enzyme fromAspergillus oryzaegrown on passion fruit peel as the carbon source and the evaluation of its potential for industrial applications. BIOCATAL BIOTRANSFOR 2016. [DOI: 10.3109/10242422.2016.1168817] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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Xylan-degrading enzymes from Aspergillus terreus: Physicochemical features and functional studies on hydrolysis of cellulose pulp. Carbohydr Polym 2015; 134:700-8. [DOI: 10.1016/j.carbpol.2015.08.040] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2015] [Revised: 08/14/2015] [Accepted: 08/17/2015] [Indexed: 11/22/2022]
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Partial Purification and Characterization of a Thermostable β-Mannanase from Aspergillus foetidus. APPLIED SCIENCES-BASEL 2015. [DOI: 10.3390/app5040881] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Silva CDOG, Aquino EN, Ricart CAO, Midorikawa GEO, Miller RNG, Filho EXF. GH11 xylanase from Emericella nidulans with low sensitivity to inhibition by ethanol and lignocellulose-derived phenolic compounds. FEMS Microbiol Lett 2015; 362:fnv094. [DOI: 10.1093/femsle/fnv094] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/31/2015] [Indexed: 01/03/2023] Open
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Identification of three important amino acid residues of xylanase AfxynA from Aspergillus fumigatus for enzyme activity and formation of xylobiose as the major product. Process Biochem 2015. [DOI: 10.1016/j.procbio.2015.01.021] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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