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Yang Z, Zhang J, Tong X, Li W, Liang L, Liu B, Chen C. Simulation of Rapid Thermal Cycle for Ultra-Fast PCR. SENSORS (BASEL, SWITZERLAND) 2022; 22:9990. [PMID: 36560360 PMCID: PMC9780856 DOI: 10.3390/s22249990] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/18/2022] [Revised: 11/18/2022] [Accepted: 11/23/2022] [Indexed: 06/17/2023]
Abstract
The polymerase chain reaction (PCR) technology is a mainstream detection method used in medical diagnoses, environmental monitoring, food hygiene, and safety. However, the systematic analysis of a compact structure with fast temperature changes for an ultra-fast PCR device that is convenient for on-site detection still lacks investigation. To overcome the problems of low heating efficiency and non-portability of PCR devices currently used, a miniaturized PCR system based on a microfluidic chip, i.e., lab-on-chip technology, has been proposed. The main objective of this paper is to explore the feasibility of using a heat resistor that can reach a fast heating rate and temperature uniformity combined with air cooling technology for rapid cooling and to investigate the influences of various pattern designs and thicknesses of the resistor on heating rates and temperature uniformity. Additionally, a PCR chip made of various materials with different thermal properties, such as surface emissivity, thermal conductivity, mass density, and heat capacity at constant pressure is analyzed. In addition to the heat loss caused by the natural convection of air, the radiation loss of the simulation object is also considered, which makes the model much closer to the practical situation. Our research results provide a considerable reference for the design of the heating and cooling modules used in the ultra-fast PCR protocol, which has great potential in In Vitro Diagnosis (IVD) and the PCR detection of foodborne pathogens and bacteria.
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Affiliation(s)
- Zhuo Yang
- School of Microelectronics, Shanghai University, Shanghai 201800, China
- Shanghai Industrial μTechnology Research Institute, Shanghai 201800, China
| | - Jiali Zhang
- School of Microelectronics, Shanghai University, Shanghai 201800, China
- Shanghai Industrial μTechnology Research Institute, Shanghai 201800, China
| | - Xin Tong
- School of Microelectronics, Shanghai University, Shanghai 201800, China
- Shanghai Industrial μTechnology Research Institute, Shanghai 201800, China
| | - Wenbing Li
- Shanghai Industrial μTechnology Research Institute, Shanghai 201800, China
| | - Lijuan Liang
- State Key Laboratory of Transducer Technology, Shanghai Institute of Microsystem and Information Technology, Chinese Academy of Sciences, Shanghai 200050, China
| | - Bo Liu
- School of Microelectronics, Shanghai University, Shanghai 201800, China
- Shanghai Industrial μTechnology Research Institute, Shanghai 201800, China
| | - Chang Chen
- School of Microelectronics, Shanghai University, Shanghai 201800, China
- Shanghai Industrial μTechnology Research Institute, Shanghai 201800, China
- State Key Laboratory of Transducer Technology, Shanghai Institute of Microsystem and Information Technology, Chinese Academy of Sciences, Shanghai 200050, China
- Shanghai Academy of Experimental Medicine, Shanghai 200052, China
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Jiang XY, Wang FL, Zhao CC, Yan JN, Han JR, Shang WH, Du YN, Wu HT. Identification of two jellyfish species (Rhopilema esculentum kishinouye and Stomolophus meleagris) in Liaoning Province of China by a rapid, simple PCR-RFLP method. Food Control 2019. [DOI: 10.1016/j.foodcont.2019.05.018] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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Authentication of nine snapper species by single-strand conformation polymorphism (SSCP) and forensically informative nucleotide sequencing (FINS) methods. Food Control 2019. [DOI: 10.1016/j.foodcont.2018.12.047] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
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Madeira P, Stefanni S, Ávila SP. Non-destructive tissue sampling and the use of PCR-RFLPs in two edible sea cucumbers from the north-eastern Atlantic, Holothuria mammata Grube, 1840 and H. sanctori Delle Chiaje, 1823 (Echinodermata: Holothuroidea). EUROPEAN ZOOLOGICAL JOURNAL 2018. [DOI: 10.1080/24750263.2018.1438529] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Affiliation(s)
- P. Madeira
- Departamento de Biologia, Faculdade de Ciências e Tecnologia, Universidade dos Açores, Azores, Portugal
- CIBIO-Açores, Universidade dos Açores, Azores, Portugal
- MPB – Marine Palaeo Biogeography, Working Group of the University of the Azores, Azores, Portugal
| | - S. Stefanni
- Department of Biology and Evolution of Marine Organisms, Stazione Zoologica A Dohrn, Naples, Italy
| | - S. P. Ávila
- Departamento de Biologia, Faculdade de Ciências e Tecnologia, Universidade dos Açores, Azores, Portugal
- CIBIO-Açores, Universidade dos Açores, Azores, Portugal
- MPB – Marine Palaeo Biogeography, Working Group of the University of the Azores, Azores, Portugal
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Wen J, Zeng L, Chen Z, Zhou Y, Xu Y, Chen D, Sun Y, Zhao J, Zhang W, Li H. Species identification of dried scallop adductor muscle (yao zhu) products sold on the market. Food Control 2017. [DOI: 10.1016/j.foodcont.2016.06.023] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Wen J, Zeng L, Sun Y, Chen D, Xu Y, Luo P, Zhao Z, Yu Z, Fan S. Authentication and traceability of fish maw products from the market using DNA sequencing. Food Control 2015. [DOI: 10.1016/j.foodcont.2015.02.033] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Galal-Khallaf A, Ardura A, Mohammed-Geba K, Borrell YJ, Garcia-Vazquez E. DNA barcoding reveals a high level of mislabeling in Egyptian fish fillets. Food Control 2014. [DOI: 10.1016/j.foodcont.2014.06.016] [Citation(s) in RCA: 51] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Huang YR, Yin MC, Hsieh YL, Yeh YH, Yang YC, Chung YL, Hsieh CHE. Authentication of consumer fraud in Taiwanese fish products by molecular trace evidence and forensically informative nucleotide sequencing. Food Res Int 2014. [DOI: 10.1016/j.foodres.2013.11.027] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Chen CH, Hsieh CH, Hwang DF. PCR-RFLP analysis using capillary electrophoresis for species identification of Cyprinidae-related products. Food Control 2013. [DOI: 10.1016/j.foodcont.2013.03.036] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Chen CH, Hsieh CH, Hwang DF. Species identification of Cyprinidae fish in Taiwan by FINS and PCR–RFLP analysis. Food Control 2012. [DOI: 10.1016/j.foodcont.2012.05.012] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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Wen J, Hu C, Zhang L, Fan S. Identification of 11 sea cucumber species by species-specific PCR method. Food Control 2012. [DOI: 10.1016/j.foodcont.2012.04.007] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Zuo T, Li Z, Lv Y, Duan G, Wang C, Tang Q, Xue C. Rapid identification of sea cucumber species with multiplex-PCR. Food Control 2012. [DOI: 10.1016/j.foodcont.2012.01.019] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
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Haye PA, Segovia NI, Vera R, Gallardo MDLÁ, Gallardo-Escárate C. Authentication of commercialized crab-meat in Chile using DNA Barcoding. Food Control 2012. [DOI: 10.1016/j.foodcont.2011.10.034] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/15/2022]
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Genetic identification of global commercial sea cucumber species on the basis of mitochondrial DNA sequences. Food Control 2011. [DOI: 10.1016/j.foodcont.2010.06.010] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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