Flying under the radar: DNA barcoding ray wings in Greece detects protected species and umbrella labelling terms

DNA mini-barcoding reveals the mislabeling rate of canned cat food in Taiwan

Background

Domestic cats are important companion animals in modern society that live closely with their owners. Mislabeling of pet food can not only harm pets but also cause issues in areas such as religious beliefs and natural resource management. Currently, the cat food market is booming. However, despite the risk that mislabeling poses to cats and humans, few studies have focused on species misrepresentation in cat food products.

Methods

To address this issue, we used DNA barcoding, a highly effective identification methodology that can be applied to even highly processed products. We targeted a short segment (~85 basepairs) of the mitochondrial 16S rRNA (16S) gene as a barcode and employed Sanger or next generation sequencing (NGS) to inspect 138 canned cat food products in the Taiwanese market.

Results

We discovered that the majority of mislabeling incidents were related to replacement of tuna with other species. Moreover, our metabarcoding revealed that numerous undeclared ingredients were present in all examined canned products. One product contained CITES Appendix II-listed shortfin mako shark (Isurus oxyrinchus). Overall, we uncovered a mislabeling rate of at least 28.99%. To verify cases of mislabeling, an official standardized list of vernacular names, along with the corresponding scientific species names, as well as a dependable barcoding reference sequence database are necessary.

Tracing Patterns and Biodiversity Aspects of the Overlooked Skates and Rays (Subclass Elasmobranchii, Superorder Batoidea) in Greece

Species belonging to the superorder Batoidea have been poorly assessed due to the lack of information on their life history aspects and their limited economic value. This work presents an overview of skates and rays inhabiting the marine Greek waters and reports biodiversity issues requiring resolution for conservation purposes. Overall, 30 species from nine families and 16 genera have been documented within the past 22 years, based on the available literature and technical reports from research surveys of the Hellenic Centre for Marine Research (HCMR). However, 28 species are currently confirmed, since the presence of two rajids has not been sufficiently demonstrated and hence is considered as doubtful. Recent changes in nomenclature allowed us to replace old with new names in four species on the Greek list; patterns in the frequency of occurrence were observed and species were assigned into five categories; and diversity and misidentification issues were reported by family. Although Greek waters are oligotrophic and not considered a biodiversity hot spot for elasmobranchs, a high number of batoid species is documented in the area; therefore, the need to reinforce knowledge on biological aspects of skates and rays, define their status and identify their main threats is essential.

COIBar-RFLP Molecular Strategy Discriminates Species and Unveils Commercial Frauds in Fishery Products

The DNA analysis is the best approach to authenticate species in seafood products and to unveil frauds based on species substitution. In this study, a molecular strategy coupling Cytochrome Oxidase I (COI) DNA barcoding with the consolidated methodology of Restriction Fragment Length Polymorphisms (RFLPs), named COIBar-RFLP, was applied for searching pattern of restriction enzyme digestion, useful to discriminate seven different fish species (juveniles of Engraulis encrasicolus and Sardina pilchardus sold in Italy as “bianchetto” and Aphia minuta sold as “rossetto”; icefish Neosalanx tangkahkeii; European perch, Perca fluviatilis and the Nile Perch, Lates niloticus; striped catfish, Pangasianodon hypophthalmus). A total of 30 fresh and frozen samples were processed for DNA barcoding, analyzed against a barcode library of COI sequences retrieved from GenBank, and validated for COIBar–RFLP analysis. Cases of misdescription were detected: 3 samples labeled as “bianchetto” were substituted by N. tangkahkeii (2 samples) and A. minuta (1 sample); 3 samples labeled as “persico reale” (P. fluviatilis) were substituted by L. niloticus and P. hypophthalmus. All species were simultaneously discriminated through the restriction pattern obtained with MspI enzyme. The results highlighted that the COIBar-RFLP could be an effective tool to authenticate fish in seafood products by responding to the emerging interest in molecular identification technologies.