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Fernández-Boo S, Machado A, Castro LFC, Azeredo R, Costas B. Unravelling the main immune repertoire of Paracentrotus lividus following Vibrio anguillarum bath challenge. FISH & SHELLFISH IMMUNOLOGY 2024; 147:109431. [PMID: 38346567 DOI: 10.1016/j.fsi.2024.109431] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Revised: 01/31/2024] [Accepted: 02/05/2024] [Indexed: 02/23/2024]
Abstract
Paracentrotus lividus is the most abundant echinoid species in the North East Atlantic Ocean and Mediterranean Sea. Although there is abundant genomic information of the species, there is no deep characterisation of the genes involved in the immune response. Here, a reference transcriptome of male and female coelomocytes was produced. The generated P. lividus transcriptome assembly has 203,511 transcripts, N50 transcript length of 1079 bp, and more than 90% estimated gene completeness in Eukaryota and Metazoa BUSCO databases, respectively. Differential gene expression analyses showed 54 and 55 up-regulated genes in P. lividus female and male coelomocyte tissues, respectively. These results suggest a similar immune gene repertoire between sexes. To examine the immune response, P. lividus was challenged with Vibrio anguillarum, one of the candidate pathogens for bald disease. Immune parameters were evaluated at cell and humoral levels, as well as the expression analysis of immune related genes at an early response stage. No differences were found at cellular and humoral levels with the exception of the increase of nitric oxide in perivisceral fluid of challenged animals. At the gene expression level, a total of 2721 genes were upregulated in challenged animals, 13.6 times higher expression than control group. Our analysis revealed that four major KEGG pathways were enriched in challenged animals: Autophagy (KEGG:04140), Endocytosis (KEGG:04144), Phagosome (KEGG:04145) and Protein processing in endoplasmic reticulum (KEGG:04141). Several toll-like receptors (TLR), scavenger receptors cysteine-rich (SRCR) or nucleotide-binding oligomerisation domain like receptors (NLR) were identified as major family genes for pathogen recognition and immune defence. This study provides a valuable transcriptomic resource and unfolds the molecular basis of immune response to V. anguillarum exposure. Overall, our findings contribute to the conservation effort of the P. lividus populations, as well as its sustainable exploitation in an aquaculture context.
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Affiliation(s)
- Sergio Fernández-Boo
- Centro Interdisciplinar de Investigação Marinha e Ambiental (CIIMAR). Terminal de Cruzeiros Do Porto de Leixões, Av. General Norton de Matos S/n, 4450-208, Matosinhos, Portugal.
| | - André Machado
- Centro Interdisciplinar de Investigação Marinha e Ambiental (CIIMAR). Terminal de Cruzeiros Do Porto de Leixões, Av. General Norton de Matos S/n, 4450-208, Matosinhos, Portugal
| | - L Filipe C Castro
- Centro Interdisciplinar de Investigação Marinha e Ambiental (CIIMAR). Terminal de Cruzeiros Do Porto de Leixões, Av. General Norton de Matos S/n, 4450-208, Matosinhos, Portugal; Departamento de Biologia, Universidade Do Porto, Rua Do Campo Alegre, S/n, Edifício FC4, 4169-007, Porto, Portugal
| | - Rita Azeredo
- Centro Interdisciplinar de Investigação Marinha e Ambiental (CIIMAR). Terminal de Cruzeiros Do Porto de Leixões, Av. General Norton de Matos S/n, 4450-208, Matosinhos, Portugal; Instituto de Ciências Biomédicas Abel Salazar (ICBAS-UP), Universidade Do Porto, Rua de Jorge Viterbo Ferreira 228, 4050-313, Porto, Portugal
| | - Benjamin Costas
- Centro Interdisciplinar de Investigação Marinha e Ambiental (CIIMAR). Terminal de Cruzeiros Do Porto de Leixões, Av. General Norton de Matos S/n, 4450-208, Matosinhos, Portugal; Instituto de Ciências Biomédicas Abel Salazar (ICBAS-UP), Universidade Do Porto, Rua de Jorge Viterbo Ferreira 228, 4050-313, Porto, Portugal
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Queiroz V, Arizza V, Vazzana M, Custódio MR. Comparative evaluation of coelomocytes in Paracentrotus sea urchins: Description of new cell types and insights on spherulocyte maturation and sea urchin physiology. ZOOL ANZ 2022. [DOI: 10.1016/j.jcz.2022.06.008] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Warner JF, Lord JW, Schreiter SA, Nesbit KT, Hamdoun A, Lyons DC. Chromosomal-Level Genome Assembly of the Painted Sea Urchin Lytechinus pictus: A Genetically Enabled Model System for Cell Biology and Embryonic Development. Genome Biol Evol 2021; 13:evab061. [PMID: 33769486 PMCID: PMC8085125 DOI: 10.1093/gbe/evab061] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/18/2021] [Indexed: 02/06/2023] Open
Abstract
The painted urchin Lytechinus pictus is a sea urchin in the family Toxopneustidae and one of several sea urchin species that are routinely used as an experimental research organism. Recently, L. pictus has emerged as a tractable model system for establishing transgenic sea urchin lines due to its amenability to long term laboratory culture. We present the first published genome of L. pictus. This chromosomal-level assembly was generated using Illumina sequencing in conjunction with Oxford Nanopore Technologies long read sequencing and HiC chromatin conformation capture sequencing. The 998.9-Mb assembly exhibits high contiguity and has a scaffold length N50 of 46.0 Mb with 97% of the sequence assembled into 19 chromosomal-length scaffolds. These 19 scaffolds exhibit a high degree of synteny compared with the 19 chromosomes of a related species Lytechinus variegatus. Ab initio and transcript evidence gene modeling, combined with sequence homology, identified 28,631 gene models that capture 92% of BUSCO orthologs. This annotation strategy was validated by manual curation of gene models for the ABC transporter superfamily, which confirmed the completeness and accuracy of the annotations. Thus, this genome assembly, in conjunction with recent high contiguity assemblies of related species, positions L. pictus as an exceptional model system for comparative functional genomics and it will be a key resource for the developmental, toxicological, and ecological biology scientific communities.
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Affiliation(s)
- Jacob F Warner
- Department of Biology and Marine Biology, University of North Carolina Wilmington, North Carolina, USA
| | - James W Lord
- Department of Biology and Marine Biology, University of North Carolina Wilmington, North Carolina, USA
| | - Samantha A Schreiter
- Department of Biology and Marine Biology, University of North Carolina Wilmington, North Carolina, USA
| | - Katherine T Nesbit
- Scripps Institution of Oceanography, University of California San Diego, La Jolla, California, USA
| | - Amro Hamdoun
- Scripps Institution of Oceanography, University of California San Diego, La Jolla, California, USA
| | - Deirdre C Lyons
- Scripps Institution of Oceanography, University of California San Diego, La Jolla, California, USA
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