Responses of plant diversity and soil microorganism diversity to water and nitrogen additions in the Qinghai-Tibetan Plateau

Effects of short-term nitrogen and phosphorus addition on soil bacterial community of different halophytes

Soil microbial community composition and diversity are often affected by nutrient enrichment, which may influence soil microbes to affect nutrient cycling and plant community structure. However, the response of soil bacteria to nitrogen (N) and phosphorus (P) addition and whether it is influenced by plants remains unclear. By 16S rRNA sequencing, we investigated the response of the rhizosphere and bulk soil bacterial communities of different halophytes (salt-rejecting, salt-absorbing, and salt-secreting plant) in the Yellow River Delta to short-term N and P addition. The response of rhizosphere bacterial diversity to N and P addition was opposite in Phragmites communis and Suaeda salsa. N addition increased the rhizosphere soil bacterial α-diversity of S. salsa and Aeluropus sinensis, while P addition decreased the rhizosphere bacterial α-diversity bacteria of S. salsa. The N and P addition had a weak effect on the rhizosphere bacterial community composition and a significant effect on the bulk soil bacterial community composition of halophytes. The S. salsa and P. communis bulk soil bacterial community were mainly influenced by P addition, while it was influenced by N addition in A. sinensis. N and P addition reduced the difference in bacterial community composition between the two types of soil. N and P addition increased the eutrophic taxa (Proteobacteria and Bacteroidetes) and decreased the oligotrophic taxa (Acidobacteria). Redundancy analysis showed that soil organic matter, salt, and total N content had significant effects on the bacterial community composition. The results clarify that the response of soil bacterial communities to N and P additions is inconsistent across the three halophyte soils, and the effect of plant species on the bacterial community was stronger than short-term N and P addition.

IMPORTANCE

The bulk soil bacterial community was more affected by nutrient addition. Nitrogen (N) and phosphorus (P) have different effects on bacterial community. Soil organic matter is a key factor influencing the response of bacterial community to nutrient addition. N and P influence on bacterial community changes with plants.

C:N:P stoichiometry of plants, soils, and microorganisms: Response to altered precipitation

Precipitation changes modify C, N, and P cycles, which regulate the functions and structure of terrestrial ecosystems. Although altered precipitation affects above- and belowground C:N:P stoichiometry, considerable uncertainties remain regarding plant-microbial nutrient allocation strategies under increased (IPPT) and decreased (DPPT) precipitation. We meta-analyzed 827 observations from 235 field studies to investigate the effects of IPPT and DPPT on the C:N:P stoichiometry of plants, soils, and microorganisms. DPPT reduced leaf C:N ratio, but increased the leaf and root N:P ratios reflecting stronger decrease of P compared with N mobility in soil under drought. IPPT increased microbial biomass C (+13%), N (+15%), P (26%), and the C:N ratio, whereas DPPT decreased microbial biomass N (-12%) and the N:P ratio. The C:N and N:P ratios of plant leaves were more sensitive to medium DPPT than to IPPT because drought increased plant N content, particularly in humid areas. The responses of plant and soil C:N:P stoichiometry to altered precipitation did not fit the double asymmetry model with a positive asymmetry under IPPT and a negative asymmetry under extreme DPPT. Soil microorganisms were more sensitive to IPPT than to DPPT, but they were more sensitive to extreme DPPT than extreme IPPT, consistent with the double asymmetry model. Soil microorganisms maintained stoichiometric homeostasis, whereas N:P ratios of plants follow that of the soils under altered precipitation. In conclusion, specific N allocation strategies of plants and microbial communities as well as N and P availability in soil critically mediate C:N:P stoichiometry by altered precipitation that need to be considered by prediction of ecosystem functions and C cycling under future climate change scenarios.

Effects of nitrogen addition on species composition and diversity of early spring herbs in a Korean pine plantation

Under the background of global nitrogen deposition, temperate forest ecosystems are suffering increasing threats, and species diversity is gradually decreasing. In this study, nitrogen addition experiments were conducted on Korean pine (Pinus koraiensis) plantations in Northeast China to explore the effect of long-term nitrogen addition on herb species diversity to test the following hypothesis: long-term nitrogen addition further reduced plant species diversity by affecting plant growth, which may be due to soil acidification caused by excessive nitrogen addition. Experimental nitrogen addition was conducted from 2014 to 2021, and the nitrogen treatment levels were as follows: N0 (control treatment, 0/(kg N ha-1 year-1)), N20 (low nitrogen treatment, 20/(kg N ha-1 year-1)), N40 (medium nitrogen treatment, 40/(kg N ha-1 year-1)) and N80 (high nitrogen treatment, 80/(kg N ha-1 year-1)). A herb community survey was conducted in the region from 2015 to 2021. The results showed that long-term nitrogen addition decreased soil pH, changed the species and composition of herbaceous plants, and decreased the species diversity of understory herbaceous plants. With the increase in nitrogen application years, middle- and high-nitrogen treatments significantly reduced the diversity of early-spring flowering herbs and early-spring foliating herbs, and their diversity decreased with the decrease in soil pH, indicating that soil acidification caused by long-term nitrogen addition may lead to the decrease of plant diversity. However, for early-spring growing herbs, adequate nitrogen addition may promote their growth. Our results show that plants have evolved different life-history strategies based on their adaptation mechanisms to the environment, and different life-history strategies have different responses to long-term nitrogen addition. However, for most plants, long-term nitrogen application will have a negative impact on the growth and diversity of herbs in temperate forests.

Effects of Short-Term Nitrogen Addition on Soil Fungal Community Increase with Nitrogen Addition Rate in an Alpine Steppe at the Source of Brahmaputra

The soil fungal community plays a crucial role in terrestrial decomposition and biogeochemical cycles. However, the responses of the soil fungal community to short-term nitrogen addition and its related dominant drivers still remain unclear. To address this gap, we conducted an experiment to explore how different levels of nitrogen addition (five levels: 0, 2.5, 5, 10, and 20 g N m-2 y-1) affected the soil fungal community in an alpine steppe at the source of Brahmaputra. Results showed that the reduced magnitudes of soil fungal species and phylogenetic α-diversity increased with the increasing nitrogen addition rate. Nitrogen addition significantly changed the community composition of species, and the dissimilarity of the soil fungal community increased with the increasing nitrogen addition rate, with a greater dissimilarity observed in the superficial soil (0-10 cm) compared to the subsurface soil (10-20 cm). Increases in the soil nitrogen availability were found to be the predominant factor in controlling the changes in the soil fungal community with the nitrogen addition gradient. Therefore, short-term nitrogen addition can still cause obvious changes in the soil fungal community in the alpine grassland at the source of Brahmaputra. We should not underestimate the potential influence of future nitrogen deposition on the soil fungal community in the high-altitude grassland of the Qinghai-Tibet Plateau. Adverse effects on the soil fungal community should be carefully considered when nitrogen fertilizer is used for ecosystem restoration of the alpine grassland of the Qinghai-Tibet Plateau.

Exploring the most important indicators for environmental condition assessment using structural equation modeling and InVEST habitat quality model

Land degradation threatens the social welfare of human societies. In order to identify the most important indicators for land degradation assessment, this article quantified 36 vegetation and soil indicators. Ecosystem condition was determined based on the ecosystem threats using the InVEST habitat quality model, dividing the region to five degradation classes, i.e., negligible, little, medium, high, and very high degradation classes. The structural equation modeling showed that vegetation indicators were more important than soil indicators for land degradation assessment. Climate had a significant mediation on the relationships between soil and vegetation indicators and degradation (P < 0.05). Warning indicators were identified for each degradation stage. The mean changes of degradation indicators were 18, 35, 56, and 78% in little, medium, high, and very high degradation classes, respectively. Cold and semi-arid climates were more influenced by vegetation indicators which had the most variations in the early stages of degradation. Warm and arid regions were more affected by soil indicators, which had the most variations in the high and very high degradation stages. This approach provides comprehensive and necessary information about the condition of ecosystems by determining the severity of degradation in an area, the most important warning indicators of degradation, and the deviation of ecosystems from normal condition at each degradation classes, which helps a lot to managers to choose appropriate restoration plans.

Different responses of soil bacterial species diversity and phylogenetic diversity to short-term nitrogen input in an alpine steppe at the source of Brahmaputra

The Qinghai-Tibet Plateau has experienced an increase in N deposition/input due to global change. However, it remains unclear how the responses and whether the responses of soil bacterial diversity to short-term N input are consistent at different levels. Here, we investigated soil bacterial species and phylogenetic α-diversity and community composition based on a short-term nitrogen input experiment (five levels: 0, 2.5, 5, 10, and 20 g N m−2 y−1) in an alpine steppe at the source of Brahmaputra, using high-throughput sequencing technology. Short-term nitrogen input did not affect the species α-diversity and β-diversity of soil bacteria. However, soil bacterial phylogenetic α-diversity and dissimilarity increased with increasing nitrogen input. Different relative contributions and correlations of primary factors to species and phylogenetic diversity under short-term nitrogen input may result in different responses, in which ecological processes also play a role. Therefore, studying the response of soil bacteria to short-term nitrogen input should take into account not only the species level but also the phylogenetic level. We should pay close attention to the potential influence of short-term nitrogen deposition/fertilization on the soil bacterial community in the alpine steppe on the Tibetan Plateau.

Differential Response of Soil Microbial Community Structure in Coal Mining Areas during Different Ecological Restoration Processes

Micro-organisms play important roles in promoting soil ecosystem restoration, but much of the current research has been limited to changes in microbial community structure in general, and little is known regarding the more sensitive and indicative microbial structures or the responses of microbial diversity to environmental change. In this study, based on high-throughput sequencing and molecular ecological network analyses, the structural characteristics of bacterial communities were investigated in response to four different ecological restoration modes in a coal mining subsidence area located in northwest China. The results showed that among soil nutrients, nitrate-nitrogen and fast-acting potassium were the most strongly associated with microbial community structure under different ecological restoration types. Proteobacteria, Actinobacteria, and Acidobacteria were identified as important phyla regarding network connectivity and structural composition. The central natural recovery zone was found to have the smallest network size and low complexity, but high modularity and good microbial community stability. Contrastingly, a highly complex molecular ecological network of soils in the photovoltaic economic zone existed beneath the photovoltaic modules, although no key species, strong bacterial competition, poor resistance to disturbance, and a significant increase in the relative abundance of Gemmatimonadetes were found. Furthermore, the reclamation zone had the highest soil nutrient content, the most complex network structure, and the most key and indicator species; however, the ecological network was less stable and readily disturbed.

Great gerbil burrowing-induced microbial diversity shapes the rhizosphere soil microenvironments of Haloxylon ammodendron in temperate deserts

In the Gurbantunggut Desert of northwest China, the main habitat of Rhombomys opimus (great gerbil) is under the thickets of Haloxylon ammodendron, the main construction species. In the long-term coexistence, continuous gerbil activities (burrowing, defecating, and gnawing) limited the growth of H. ammodendron, affected the root microenvironment under the H. ammodendron forest, and weakened the desert ecosystem. However, there is a lack of general understanding about the response of desert soil microhabitats to such gerbil disturbance. Accordingly, this study examined the effects of different intensities of gerbil disturbance (none, mild, moderate, or severe disturbances) on soil nutrients content and used high-throughput sequencing to explore the change in diversity and structure of microbial communities (bacteria and fungi) in H. ammodendron rhizosphere at different soil depths (0–20, 20–40, and 40–60 cm). In the arid desert ecosystem, compared with the soil fungal community, the alpha diversity of the soil bacterial community was significantly affected by gerbil disturbance. Meanwhile, both soil depth and gerbil disturbance significantly impacted the beta diversity and relative abundance of soil bacterial and fungal communities. In addition, gerbil disturbance significantly altered the soil characteristics affecting the distribution and composition of soil microbial communities in H. ammodendron rhizosphere, especially the soil bacterial community. This survey provides evidence that remold impact of gerbil disturbance on soil microenvironment of H. ammodendron rhizosphere in desert ecosystems in northwest China, which helps to further understand the potential correlations with changes in the microbial community at a regional scale.

Characteristics of nitrogen deposition research within grassland ecosystems globally and its insight from grassland microbial community changes in China

As global change continues to intensify, the mode and rate of nitrogen input from the atmosphere to grassland ecosystems had changed dramatically. Firstly, we conducted a systematic analysis of the literature on the topic of nitrogen deposition impacts over the past 30 years using a bibliometric analysis. A systematic review of the global research status, publication patterns, research hotspots and important literature. We found a large number of publications in the Chinese region, and mainly focuses on the field of microorganisms. Secondly, we used a meta-analysis to focus on microbial changes using the Chinese grassland ecosystem as an example. The results show that the research on nitrogen deposition in grassland ecosystems shows an exponential development trend, and the authors and research institutions of the publications are mainly concentrated in China, North America, and Western Europe. The keyword clustering results showed 11 important themes labeled climate change, elevated CO₂, species richness and diversity, etc. in these studies. The burst keyword analysis indicated that temperature sensitivity, microbial communities, etc. are the key research directions. The results of the meta-analysis found that nitrogen addition decreased soil microbial diversity, and different ecosystems may respond differently. Treatment time, nitrogen addition rate, external environmental conditions, and pH had major effects on microbial alpha diversity and biomass. The loss of microbial diversity and the reduction of biomass with nitrogen fertilizer addition will alter ecosystem functioning, with dramatic impacts on global climate change. The results of the study will help researchers to further understand the subject and have a deep understanding of research hotspots, which are of great value to future scientific research.

Soil Microbial Community Response to Nitrogen Application on a Swamp Meadow in the Arid Region of Central Asia

Although a large number of studies have reported the importance of microbial communities in terrestrial ecosystems and their response to nitrogen (N) application, it is not clear in arid alpine wetlands, and the mechanisms involved need to be clarified. Therefore, the response of the soil microbial community in a swamp meadow to short-term (1 year) N application (CK: 0, N1: 8, N2: 16 kg⋅N⋅hm^–2⋅a^–1) was studied using 16S/ITS rRNA gene high-throughput sequencing technology. Results showed that N application had no significant effect on soil microbial community diversity, but significantly changed soil bacterial community structure. N1 and N2 treatments significantly reduced the relative abundance of Chloroflexi (18.11 and 32.99% lower than CK, respectively). N2 treatment significantly reduced the relative abundance of Nitrospirae (24.94% lower than CK). Meanwhile, N application reduced the potential function of partial nitrogen (N) and sulfur (S) cycling in bacterial community. For example, compared with CK, nitrate respiration and nitrogen respiration decreased by 35.78–69.06%, and dark sulfide oxidation decreased by 76.36–94.29%. N application had little effect on fungal community structure and function. In general, short-term N application directly affected bacterial community structure and indirectly affected bacterial community structure and function through available potassium, while soil organic carbon was an important factor affecting fungal community structure and function.

Early effects of crop tree management on undergrowth plant diversity and soil physicochemical properties in a Pinus massoniana plantation

Background

Soil and understory vegetation are vital components of forest ecosystems. Identifying the interaction of plantation management to vegetation and soil is crucial for developing sustainable plantation ecosystem management strategies. As one of the main measures of close-to-nature management of forest plantation, few studies have paid attention to the effect of crop tree management on the soil properties and understory vegetation.

Methods

A 36-year-old Pinus massoniana plantation in Huaying city, Sichuan Province was taken as the research object to analyse the changes in undergrowth plant diversity and soil physicochemical properties under three different crop tree densities (100, 150, and 200 N/ha).

Results

Our results showed that the contents of available phosphorus, organic matter and hydrolysable nitrogen in the topsoil increased significantly after crop tree management, while content of available potassium decreased. The composition of shrub and herb layer was richer, and the dominant species were obviously replaced after crop tree management. The Shannon-Wiener index and Richness index of shrub layer, and the diversity of herb layer increased significantly after crop tree management. Herb layer diversity indexes and Richness index of shrub layer were closely related to soil organic matter, available phosphorus, hydrolysable nitrogen, available potassium, soil moisture and bulk density. As the main limiting factors for plant growth, nitrogen, phosphorus and potassium were closely related to plant diversity and to the distribution of the dominant species. At the initial stage of crop tree management, each treatment significantly improved the soil physicochemical properties and plant diversity of Pinus massoniana plantation, and the comprehensive evaluation was 200 N/ha >100 N/ha >150 N/ha >CK. Compared with other treatments, 200 N/ha had the best effect on improving the undergrowth environment of the Pinus massoniana plantation in the initial stage of crop tree management.

Disentangling Responses of the Subsurface Microbiome to Wetland Status and Implications for Indicating Ecosystem Functions

In this study, we analyzed microbial community composition and the functional capacities of degraded sites and restored/natural sites in two typical wetlands of Northeast China-the Phragmites marsh and the Carex marsh, respectively. The degradation of these wetlands, caused by grazing or land drainage for irrigation, alters microbial community components and functional structures, in addition to changing the aboveground vegetation and soil geochemical properties. Bacterial and fungal diversity at the degraded sites were significantly lower than those at restored/natural sites, indicating that soil microbial groups were sensitive to disturbances in wetland ecosystems. Further, a combined analysis using high-throughput sequencing and GeoChip arrays showed that the abundance of carbon fixation and degradation, and ~95% genes involved in nitrogen cycling were increased in abundance at grazed Phragmites sites, likely due to the stimulating impact of urine and dung deposition. In contrast, the abundance of genes involved in methane cycling was significantly increased in restored wetlands. Particularly, we found that microbial composition and activity gradually shifts according to the hierarchical marsh sites. Altogether, this study demonstrated that microbial communities as a whole could respond to wetland changes and revealed the functional potential of microbes in regulating biogeochemical cycles.