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For: Gladyshev EA, Arkhipova IR. Rotifer rDNA-specific R9 retrotransposable elements generate an exceptionally long target site duplication upon insertion. Gene 2009;448:145-50. [DOI: 10.1016/j.gene.2009.08.016] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2009] [Revised: 07/19/2009] [Accepted: 08/27/2009] [Indexed: 11/27/2022]
Number Cited by Other Article(s)
1
López-Cortegano E, Craig RJ, Chebib J, Balogun EJ, Keightley PD. Rates and spectra of de novo structural mutations in Chlamydomonas reinhardtii. Genome Res 2023;33:45-60. [PMID: 36617667 PMCID: PMC9977147 DOI: 10.1101/gr.276957.122] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2022] [Accepted: 12/06/2022] [Indexed: 12/14/2022]
2
Craig RJ, Yushenova IA, Rodriguez F, Arkhipova IR. An ancient clade of Penelope-like retroelements with permuted domains is present in the green lineage and protists, and dominates many invertebrate genomes. Mol Biol Evol 2021;38:5005-5020. [PMID: 34320655 PMCID: PMC8557442 DOI: 10.1093/molbev/msab225] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]  Open
3
Nowell RW, Wilson CG, Almeida P, Schiffer PH, Fontaneto D, Becks L, Rodriguez F, Arkhipova IR, Barraclough TG. Evolutionary dynamics of transposable elements in bdelloid rotifers. eLife 2021;10:e63194. [PMID: 33543711 PMCID: PMC7943196 DOI: 10.7554/elife.63194] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2020] [Accepted: 02/04/2021] [Indexed: 12/17/2022]  Open
4
R2 and Non-Site-Specific R2-Like Retrotransposons of the German Cockroach, Blattella germanica. Genes (Basel) 2020;11:genes11101202. [PMID: 33076367 PMCID: PMC7650587 DOI: 10.3390/genes11101202] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2020] [Revised: 10/10/2020] [Accepted: 10/12/2020] [Indexed: 11/17/2022]  Open
5
Khadgi BB, Govindaraju A, Christensen SM. Completion of LINE integration involves an open '4-way' branched DNA intermediate. Nucleic Acids Res 2019;47:8708-8719. [PMID: 31392993 PMCID: PMC6895275 DOI: 10.1093/nar/gkz673] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2018] [Revised: 06/26/2019] [Accepted: 07/29/2019] [Indexed: 12/20/2022]  Open
6
Vaschetto LM, Ortiz N. The Role of Sequence Duplication in Transcriptional Regulation and Genome Evolution. Curr Genomics 2019;20:405-408. [PMID: 32476997 PMCID: PMC7235390 DOI: 10.2174/1389202920666190320140721] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2019] [Revised: 01/22/2019] [Accepted: 01/24/2019] [Indexed: 12/26/2022]  Open
7
Bonandin L, Scavariello C, Mingazzini V, Luchetti A, Mantovani B. Obligatory parthenogenesis and TE load: Bacillus stick insects and the R2 non-LTR retrotransposon. INSECT SCIENCE 2017;24:409-417. [PMID: 26813995 DOI: 10.1111/1744-7917.12322] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Revised: 12/17/2015] [Accepted: 01/03/2016] [Indexed: 06/05/2023]
8
Kojima KK, Seto Y, Fujiwara H. The Wide Distribution and Change of Target Specificity of R2 Non-LTR Retrotransposons in Animals. PLoS One 2016;11:e0163496. [PMID: 27662593 PMCID: PMC5035012 DOI: 10.1371/journal.pone.0163496] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2016] [Accepted: 09/09/2016] [Indexed: 12/23/2022]  Open
9
Govindaraju A, Cortez JD, Reveal B, Christensen SM. Endonuclease domain of non-LTR retrotransposons: loss-of-function mutants and modeling of the R2Bm endonuclease. Nucleic Acids Res 2016;44:3276-87. [PMID: 26961309 PMCID: PMC4838377 DOI: 10.1093/nar/gkw134] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2015] [Revised: 02/22/2016] [Accepted: 02/23/2016] [Indexed: 01/07/2023]  Open
10
Site-specific non-LTR retrotransposons. Microbiol Spectr 2016;3:MDNA3-0001-2014. [PMID: 26104700 DOI: 10.1128/microbiolspec.mdna3-0001-2014] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]  Open
11
Integration, Regulation, and Long-Term Stability of R2 Retrotransposons. Microbiol Spectr 2016;3:MDNA3-0011-2014. [PMID: 26104703 DOI: 10.1128/microbiolspec.mdna3-0011-2014] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]  Open
12
Eickbush DG, Burke WD, Eickbush TH. Evolution of the R2 retrotransposon ribozyme and its self-cleavage site. PLoS One 2013;8:e66441. [PMID: 24066021 PMCID: PMC3774820 DOI: 10.1371/journal.pone.0066441] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2013] [Accepted: 05/07/2013] [Indexed: 12/23/2022]  Open
13
Arkhipova IR, Rodriguez F. Genetic and epigenetic changes involving (retro)transposons in animal hybrids and polyploids. Cytogenet Genome Res 2013;140:295-311. [PMID: 23899811 DOI: 10.1159/000352069] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]  Open
14
Mukha DV, Pasyukova EG, Kapelinskaya TV, Kagramanova AS. Endonuclease domain of the Drosophila melanogaster R2 non-LTR retrotransposon and related retroelements: a new model for transposition. Front Genet 2013;4:63. [PMID: 23637706 PMCID: PMC3636483 DOI: 10.3389/fgene.2013.00063] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2012] [Accepted: 04/05/2013] [Indexed: 01/25/2023]  Open
15
Non-LTR R2 element evolutionary patterns: phylogenetic incongruences, rapid radiation and the maintenance of multiple lineages. PLoS One 2013;8:e57076. [PMID: 23451148 PMCID: PMC3581529 DOI: 10.1371/journal.pone.0057076] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2012] [Accepted: 01/17/2013] [Indexed: 01/02/2023]  Open
16
Luchetti A, Mingazzini V, Mantovani B. 28S junctions and chimeric elements of the rDNA targeting non-LTR retrotransposon R2 in crustacean living fossils (Branchiopoda, Notostraca). Genomics 2012;100:51-6. [PMID: 22564473 DOI: 10.1016/j.ygeno.2012.04.005] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2012] [Revised: 04/17/2012] [Accepted: 04/23/2012] [Indexed: 11/29/2022]
17
Eagle SH, Crease TJ. Copy number variation of ribosomal DNA and Pokey transposons in natural populations of Daphnia. Mob DNA 2012;3:4. [PMID: 22390386 PMCID: PMC3315735 DOI: 10.1186/1759-8753-3-4] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2011] [Accepted: 03/05/2012] [Indexed: 11/10/2022]  Open
18
Shivram H, Cawley D, Christensen SM. Targeting novel sites: The N-terminal DNA binding domain of non-LTR retrotransposons is an adaptable module that is implicated in changing site specificities. Mob Genet Elements 2011;1:169-178. [PMID: 22479684 PMCID: PMC3312299 DOI: 10.4161/mge.1.3.18453] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2011] [Revised: 10/16/2011] [Accepted: 10/17/2011] [Indexed: 02/07/2023]  Open
19
Thompson BK, Christensen SM. Independently derived targeting of 28S rDNA by A- and D-clade R2 retrotransposons: Plasticity of integration mechanism. Mob Genet Elements 2011;1:29-37. [PMID: 22016843 PMCID: PMC3190273 DOI: 10.4161/mge.1.1.16485] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2011] [Revised: 05/16/2011] [Accepted: 05/16/2011] [Indexed: 12/24/2022]  Open
20
Ghesini S, Luchetti A, Marini M, Mantovani B. The Non-LTR Retrotransposon R2 in Termites (Insecta, Isoptera): Characterization and Dynamics. J Mol Evol 2011;72:296-305. [DOI: 10.1007/s00239-011-9430-y] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2010] [Accepted: 01/03/2011] [Indexed: 01/07/2023]
21
Gladyshev EA, Arkhipova IR. Genome structure of bdelloid rotifers: shaped by asexuality or desiccation? J Hered 2010;101 Suppl 1:S85-93. [PMID: 20421328 DOI: 10.1093/jhered/esq008] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]  Open
22
Gladyshev EA, Arkhipova IR. A subtelomeric non-LTR retrotransposon Hebe in the bdelloid rotifer Adineta vaga is subject to inactivation by deletions but not 5' truncations. Mob DNA 2010;1:12. [PMID: 20359339 PMCID: PMC2861651 DOI: 10.1186/1759-8753-1-12] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2009] [Accepted: 04/01/2010] [Indexed: 11/10/2022]  Open
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