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For: Zhi X, Leng F. Dependence of transcription-coupled DNA supercoiling on promoter strength in Escherichia coli topoisomerase I deficient strains. Gene 2012. [PMID: 23201416 DOI: 10.1016/j.gene.2012.11.011] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Number Cited by Other Article(s)
1
Behle A, Dietsch M, Goldschmidt L, Murugathas W, Berwanger L, Burmester J, Yao L, Brandt D, Busche T, Kalinowski J, Hudson E, Ebenhöh O, Axmann I, Machné R. Manipulation of topoisomerase expression inhibits cell division but not growth and reveals a distinctive promoter structure in Synechocystis. Nucleic Acids Res 2022;50:12790-12808. [PMID: 36533444 PMCID: PMC9825172 DOI: 10.1093/nar/gkac1132] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2021] [Revised: 11/03/2022] [Accepted: 11/10/2022] [Indexed: 12/23/2022]  Open
2
Dorman CJ, Ní Bhriain N. CRISPR-Cas, DNA Supercoiling, and Nucleoid-Associated Proteins. Trends Microbiol 2019;28:19-27. [PMID: 31519332 DOI: 10.1016/j.tim.2019.08.004] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2019] [Revised: 08/02/2019] [Accepted: 08/08/2019] [Indexed: 12/11/2022]
3
Dorman CJ. DNA supercoiling and transcription in bacteria: a two-way street. BMC Mol Cell Biol 2019;20:26. [PMID: 31319794 PMCID: PMC6639932 DOI: 10.1186/s12860-019-0211-6] [Citation(s) in RCA: 58] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2019] [Accepted: 07/09/2019] [Indexed: 11/23/2022]  Open
4
Inhibition of the gyrA promoter by transcription-coupled DNA supercoiling in Escherichia coli. Sci Rep 2018;8:14759. [PMID: 30282997 PMCID: PMC6170449 DOI: 10.1038/s41598-018-33089-4] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2018] [Accepted: 09/19/2018] [Indexed: 11/13/2022]  Open
5
Großmann P, Lück A, Kaleta C. Model-based genome-wide determination of RNA chain elongation rates in Escherichia coli. Sci Rep 2017;7:17213. [PMID: 29222445 PMCID: PMC5722913 DOI: 10.1038/s41598-017-17408-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2017] [Accepted: 11/24/2017] [Indexed: 11/17/2022]  Open
6
Chromosomal organization of transcription: in a nutshell. Curr Genet 2017;64:555-565. [PMID: 29184972 DOI: 10.1007/s00294-017-0785-5] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2017] [Revised: 11/20/2017] [Accepted: 11/20/2017] [Indexed: 01/25/2023]
7
Miravet-Verde S, Lloréns-Rico V, Serrano L. Alternative transcriptional regulation in genome-reduced bacteria. Curr Opin Microbiol 2017;39:89-95. [PMID: 29154025 DOI: 10.1016/j.mib.2017.10.022] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2017] [Accepted: 10/26/2017] [Indexed: 12/11/2022]
8
Zhi X, Dages S, Dages K, Liu Y, Hua ZC, Makemson J, Leng F. Transient and dynamic DNA supercoiling potently stimulates the leu-500 promoter in Escherichia coli. J Biol Chem 2017;292:14566-14575. [PMID: 28696257 DOI: 10.1074/jbc.m117.794628] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2017] [Revised: 06/23/2017] [Indexed: 01/11/2023]  Open
9
Krajina BA, Spakowitz AJ. Large-Scale Conformational Transitions in Supercoiled DNA Revealed by Coarse-Grained Simulation. Biophys J 2017;111:1339-1349. [PMID: 27705758 DOI: 10.1016/j.bpj.2016.07.045] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2016] [Revised: 07/26/2016] [Accepted: 07/28/2016] [Indexed: 02/07/2023]  Open
10
Del Peso Santos T, Shingler V. Inter-sigmulon communication through topological promoter coupling. Nucleic Acids Res 2016;44:9638-9649. [PMID: 27422872 PMCID: PMC5175336 DOI: 10.1093/nar/gkw639] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2016] [Revised: 07/01/2016] [Accepted: 07/06/2016] [Indexed: 12/03/2022]  Open
11
Dorman CJ, Dorman MJ. DNA supercoiling is a fundamental regulatory principle in the control of bacterial gene expression. Biophys Rev 2016;8:89-100. [PMID: 28510216 DOI: 10.1007/s12551-016-0238-2] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2016] [Accepted: 06/01/2016] [Indexed: 11/28/2022]  Open
12
DNA supercoiling is a fundamental regulatory principle in the control of bacterial gene expression. Biophys Rev 2016;8:209-220. [PMID: 28510224 DOI: 10.1007/s12551-016-0205-y] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2016] [Accepted: 06/01/2016] [Indexed: 12/27/2022]  Open
13
Sobetzko P. Transcription-coupled DNA supercoiling dictates the chromosomal arrangement of bacterial genes. Nucleic Acids Res 2016;44:1514-24. [PMID: 26783203 PMCID: PMC4770239 DOI: 10.1093/nar/gkw007] [Citation(s) in RCA: 57] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2015] [Accepted: 01/03/2016] [Indexed: 11/14/2022]  Open
14
Fulcrand G, Dages S, Zhi X, Chapagain P, Gerstman BS, Dunlap D, Leng F. DNA supercoiling, a critical signal regulating the basal expression of the lac operon in Escherichia coli. Sci Rep 2016;6:19243. [PMID: 26763930 PMCID: PMC4725879 DOI: 10.1038/srep19243] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2015] [Accepted: 12/10/2015] [Indexed: 12/20/2022]  Open
15
Bryant JA, Sellars LE, Busby SJW, Lee DJ. Chromosome position effects on gene expression in Escherichia coli K-12. Nucleic Acids Res 2014;42:11383-92. [PMID: 25209233 PMCID: PMC4191405 DOI: 10.1093/nar/gku828] [Citation(s) in RCA: 175] [Impact Index Per Article: 17.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]  Open
16
Fulcrand G, Zhi X, Leng F. Transcription-coupled DNA supercoiling in defined protein systems and in E. coli topA mutant strains. IUBMB Life 2013;65:615-22. [PMID: 23757201 DOI: 10.1002/iub.1179] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2013] [Accepted: 04/16/2013] [Indexed: 11/09/2022]
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