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Whole Transcriptome-Based Study to Speculate upon the Silkworm Yellow Blood Inhibitor (I) Gene and Analyze the miRNA-Mediated Gene Regulatory Network. Processes (Basel) 2022. [DOI: 10.3390/pr10081556] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
White cocoon is developed and used as a natural fiber, and different silkworm strains have different cocoon colors. Natural-colored cocoons are preferred by people, however, the cocoon color mainly settles on sericin and it basically falls off after reeling. Currently, there are no varieties applied to production due to the formation mechanism of cocoon color is not clear. The formation of cocoon color involves multiple gene regulations. Previous studies have shown that the main genes regulating cocoon traits are the yellow blood (Y) gene, yellow blood inhibitor (I) gene, and yellow cocoon (C) gene. Among them, the products of the Y gene and C gene have been studied, but the I gene is still unclear. In this study, the midgut tissues of the yellow (NB) and the white (306) cocoon silkworm were analyzed by whole transcriptome sequencing. The results showed that there are 1639 DE-circRNAs, 70 DE-miRNAs, and 3225 DE-mRNAs, including 1785 up-regulated genes and 1440 down-regulated genes. GO and KEGG annotation results indicated that DE-mRNAs are mainly involved in intracellular transport, signal transduction, lipid transport, and metabolic processes. Two key genes, KWMTBOMO10339 and KWMTBOMO16553, were screened out according to the annotation results, which were involved in amino acid transport and ion exchange function, respectively. The interaction analysis between ncRNA and target genes showed that there were five miRNAs regulating these two genes. The qPCR analysis showed that the I gene was down-regulated, and the miRNA expression profiles were most up-regulated. Therefore, during the yellow and white cocoon formation, KWMTBOMO10339 and KWMTBOMO16553 may be regulated by miRNA, resulting in the non-expression of KWMTBOMO10339 and KWMTBOMO16553 in yellow cocoon silkworm, and the pigment molecules can enter hemolymph from the midgut to form yellow blood, then transport to the middle silk gland to finally form yellow cocoons.
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Pistone A, Sagnella A, Chieco C, Bertazza G, Varchi G, Formaggio F, Posati T, Saracino E, Caprini M, Bonetti S, Toffanin S, Di Virgilio N, Muccini M, Rossi F, Ruani G, Zamboni R, Benfenati V. Silk fibroin film from golden-yellow Bombyx mori is a biocomposite that contains lutein and promotes axonal growth of primary neurons. Biopolymers 2016; 105:287-99. [PMID: 26756916 DOI: 10.1002/bip.22806] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2015] [Revised: 12/21/2015] [Accepted: 01/06/2016] [Indexed: 12/28/2022]
Abstract
The use of doped silk fibroin (SF) films and substrates from Bombyx mori cocoons for green nanotechnology and biomedical applications has been recently highlighted. Cocoons from coloured strains of B. mori, such as Golden-Yellow, contain high levels of pigments that could have a huge potential for the fabrication of SF based biomaterials targeted to photonics, optoelectronics and neuroregenerative medicine. However, the features of extracted and regenerated SF from cocoons of B. mori Golden-Yellow strain have never been reported. Here we provide a chemophysical characterization of regenerated silk fibroin (RSF) fibers, solution, and films obtained from cocoons of a Golden-Yellow strain of B. mori, by SEM, (1) H-NMR, HPLC, FT-IR, Raman and UV-Vis spectroscopy. We found that the extracted solution and films from B. mori Golden-Yellow fibroin displayed typical Raman spectroscopic and optical features of carotenoids. HPLC-analyses revealed that lutein was the carotenoid contained in the fiber and RSF biopolymer from yellow cocoons. Notably, primary neurons cultured on yellow SF displayed a threefold higher neurite length than those grown of white SF films. The results we report pave the way to expand the potential use of yellow SF in the field of neuroregenerative medicine and provide green chemistry approaches in biomedicine.
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Affiliation(s)
- Assunta Pistone
- Institute of the Organic Synthesis and Photoreactivity, National Research Council of Italy (CNR-ISOF), via P. Gobetti 101, Bologna, 40129, Italy.,Institute of Nanostructured Materials, National Research Council of Italy (CNR-ISMN), via P. Gobetti 101, Bologna, 40129, Italy
| | - Anna Sagnella
- Institute of the Organic Synthesis and Photoreactivity, National Research Council of Italy (CNR-ISOF), via P. Gobetti 101, Bologna, 40129, Italy.,Laboratory MIST E-R, via P. Gobetti 101, Bologna, 40129, Italy
| | - Camilla Chieco
- Institute of Biometeorology, National Research Council of Italy (CNR-IBIMET), via P. Gobetti 101, Bologna, 40129, Italy
| | - Gianpaolo Bertazza
- Institute of Biometeorology, National Research Council of Italy (CNR-IBIMET), via P. Gobetti 101, Bologna, 40129, Italy
| | - Greta Varchi
- Institute of the Organic Synthesis and Photoreactivity, National Research Council of Italy (CNR-ISOF), via P. Gobetti 101, Bologna, 40129, Italy
| | - Francesco Formaggio
- Institute of Nanostructured Materials, National Research Council of Italy (CNR-ISMN), via P. Gobetti 101, Bologna, 40129, Italy
| | - Tamara Posati
- Institute of the Organic Synthesis and Photoreactivity, National Research Council of Italy (CNR-ISOF), via P. Gobetti 101, Bologna, 40129, Italy
| | - Emanuela Saracino
- Institute of Nanostructured Materials, National Research Council of Italy (CNR-ISMN), via P. Gobetti 101, Bologna, 40129, Italy
| | - Marco Caprini
- Institute of Nanostructured Materials, National Research Council of Italy (CNR-ISMN), via P. Gobetti 101, Bologna, 40129, Italy.,Department of Pharmacy and Biotechnology, via S. Donato 19/2, University of Bologna, Bologna, 40127, Italy
| | - Simone Bonetti
- Institute of Nanostructured Materials, National Research Council of Italy (CNR-ISMN), via P. Gobetti 101, Bologna, 40129, Italy
| | - Stefano Toffanin
- Institute of Nanostructured Materials, National Research Council of Italy (CNR-ISMN), via P. Gobetti 101, Bologna, 40129, Italy
| | - Nicola Di Virgilio
- Institute of Biometeorology, National Research Council of Italy (CNR-IBIMET), via P. Gobetti 101, Bologna, 40129, Italy
| | - Michele Muccini
- Institute of Nanostructured Materials, National Research Council of Italy (CNR-ISMN), via P. Gobetti 101, Bologna, 40129, Italy
| | - Federica Rossi
- Institute of Biometeorology, National Research Council of Italy (CNR-IBIMET), via P. Gobetti 101, Bologna, 40129, Italy
| | - Giampiero Ruani
- Institute of Nanostructured Materials, National Research Council of Italy (CNR-ISMN), via P. Gobetti 101, Bologna, 40129, Italy
| | - Roberto Zamboni
- Institute of the Organic Synthesis and Photoreactivity, National Research Council of Italy (CNR-ISOF), via P. Gobetti 101, Bologna, 40129, Italy
| | - Valentina Benfenati
- Institute of the Organic Synthesis and Photoreactivity, National Research Council of Italy (CNR-ISOF), via P. Gobetti 101, Bologna, 40129, Italy
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Recent progress in molecular genetic studies on the carotenoid transport system using cocoon-color mutants of the silkworm. Arch Biochem Biophys 2015; 572:151-157. [PMID: 25579881 DOI: 10.1016/j.abb.2014.12.029] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2014] [Revised: 12/19/2014] [Accepted: 12/29/2014] [Indexed: 11/23/2022]
Abstract
The existence of tissue-specific delivery for certain carotenoids is supported by genetic evidence from the silkworm Bombyx mori and the identification of cocoon color mutant genes, such as Yellow blood (Y), Yellow cocoon (C), and Flesh cocoon (F). Mutants with white cocoons are defective in one of the steps involved in transporting carotenoids from the midgut lumen to the middle silk gland via the hemolymph lipoprotein, lipophorin, and the different colored cocoons are caused by the accumulation of specific carotenoids into the middle silk gland. The Y gene encodes carotenoid-binding protein (CBP), which is expected to function as the cytosolic transporter of carotenoids across the enterocyte and epithelium of the middle silk gland. The C and F genes encode the C locus-associated membrane protein, which is homologous to a mammalian high-density lipoprotein receptor-2 (Cameo2) and scavenger receptor class B member 15 (SCRB15), respectively; these membrane proteins are expected to function as non-internalizing lipophorin receptors in the middle silk gland. Cameo2 and SCRB15 belong to the cluster determinant 36 (CD36) family, with Cameo2 exhibiting specificity not only for lutein, but also for zeaxanthin and astaxanthin, while SCRB15 seems to have specificity toward carotene substrates such as α-carotene and β-carotene. These findings suggest that Cameo2 and SCRB15 can discriminate the chemical structure of lutein and β-carotene from circulating lipophorin during uptake. These data provide the first evidence that CD36 family proteins can discriminate individual carotenoid molecules in lipophorin.
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