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For: Zhang YJ, Ren LL, Lin XY, Han XM, Wang W, Yang ZL. Molecular evolution and functional characterization of chitinase gene family in Populus trichocarpa. Gene 2022;822:146329. [PMID: 35181500 DOI: 10.1016/j.gene.2022.146329] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Revised: 01/19/2022] [Accepted: 02/11/2022] [Indexed: 11/16/2022]

For:	Zhang YJ, Ren LL, Lin XY, Han XM, Wang W, Yang ZL. Molecular evolution and functional characterization of chitinase gene family in Populus trichocarpa. Gene 2022;822:146329. [PMID: 35181500 DOI: 10.1016/j.gene.2022.146329] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Revised: 01/19/2022] [Accepted: 02/11/2022] [Indexed: 11/16/2022]

Number

Cited by Other Article(s)

Sajjad M, Ahmad A, Riaz MW, Hussain Q, Yasir M, Lu M. Recent genome resequencing paraded COBRA-Like gene family roles in abiotic stress and wood formation in Poplar. FRONTIERS IN PLANT SCIENCE 2023;14:1242836. [PMID: 37780503 PMCID: PMC10540467 DOI: 10.3389/fpls.2023.1242836] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/19/2023] [Accepted: 08/14/2023] [Indexed: 10/03/2023]

Abstract

A cell wall determines the mechanical properties of a cell, serves as a barrier against plant stresses, and allows cell division and growth processes. The COBRA-Like (COBL) gene family encodes a putative glycosylphosphatidylinositol (GPI)-anchored protein that controls cellulose deposition and cell progression in plants by contributing to the microfibril orientation of a cell wall. Despite being studied in different plant species, there is a dearth of the comprehensive global analysis of COBL genes in poplar. Poplar is employed as a model woody plant to study abiotic stresses and biomass production in tree research. Improved genome resequencing has enabled the comprehensive exploration of the evolution and functional capacities of PtrCOBLs (Poplar COBRA-Like genes) in poplar. Phylogeny analysis has discerned and classified PtrCOBLs into two groups resembling the Arabidopsis COBL family, and group I genes possess longer proteins but have fewer exons than group II. Analysis of gene structure and motifs revealed PtrCOBLs maintained a rather stable motif and exon-intron pattern across members of the same group. Synteny and collinearity analyses exhibited that the evolution of the COBL gene family was heavily influenced by gene duplication events. PtrCOBL genes have undergone both segmental duplication and tandem duplication, followed by purifying selection. Promotor analysis flaunted various phytohormone-, growth- and stress-related cis-elements (e.g., MYB, ABA, MeJA, SA, AuxR, and ATBP1). Likewise, 29 Ptr-miRNAs of 20 families were found targeting 11 PtrCOBL genes. PtrCOBLs were found localized at the plasma membrane and extracellular matrix, while gene ontology analysis showed their involvement in plant development, plant growth, stress response, cellulose biosynthesis, and cell wall biogenesis. RNA-seq datasets depicted the bulk of PtrCOBL genes expression being found in plant stem tissues and leaves, rendering mechanical strength and rejoinders to environmental cues. PtrCOBL2, 3, 10, and 11 manifested the highest expression in vasculature and abiotic stress, and resemblant expression trends were upheld by qRT-PCR. Co-expression network analysis identified PtrCOBL2 and PtrCOBL3 as hub genes across all abiotic stresses and wood developing tissues. The current study reports regulating roles of PtrCOBLs in xylem differentiating tissues, tension wood formation, and abiotic stress latency that lay the groundwork for future functional studies of the PtrCOBL genes in poplar breeding.

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Guo J, Mou Y, Li Y, Yang Q, Wang X, Lin H, Kang Z, Guo J. Silencing a Chitinase Gene, PstChia1, Reduces Virulence of Puccinia striiformis f. sp. tritici. Int J Mol Sci 2023;24:ijms24098215. [PMID: 37175921 PMCID: PMC10179651 DOI: 10.3390/ijms24098215] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2023] [Revised: 04/28/2023] [Accepted: 05/01/2023] [Indexed: 05/15/2023] Open

Haxim Y, Kahar G, Zhang X, Si Y, Waheed A, Liu X, Wen X, Li X, Zhang D. Genome-wide characterization of the chitinase gene family in wild apple (Malus sieversii) and domesticated apple (Malus domestica) reveals its role in resistance to Valsa mali. FRONTIERS IN PLANT SCIENCE 2022;13:1007936. [PMID: 36420026 PMCID: PMC9676469 DOI: 10.3389/fpls.2022.1007936] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/31/2022] [Accepted: 10/03/2022] [Indexed: 06/16/2023]

Affiliation(s)

Yakupjan Haxim State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Ürümqi, China Xinjiang Key Laboratory of Conservation and Utilization of Plant Gene Resources, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Ürümqi, China Turpan Eremophytes Botanical Garden, Chinese Academy of Sciences, Turpan, China
Gulnaz Kahar State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Ürümqi, China University of Chinese Academy of Sciences, College of Resources and Environment, Beijing, China
Xuechun Zhang State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Ürümqi, China School of Life Sciences, Xinjiang Normal University, Ürümqi, China
Yu Si University of Chinese Academy of Sciences, College of Resources and Environment, Beijing, China
Abdul Waheed State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Ürümqi, China Xinjiang Key Laboratory of Conservation and Utilization of Plant Gene Resources, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Ürümqi, China
Xiaojie Liu State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Ürümqi, China Xinjiang Key Laboratory of Conservation and Utilization of Plant Gene Resources, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Ürümqi, China Turpan Eremophytes Botanical Garden, Chinese Academy of Sciences, Turpan, China
Xuejing Wen State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Ürümqi, China Xinjiang Key Laboratory of Conservation and Utilization of Plant Gene Resources, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Ürümqi, China Turpan Eremophytes Botanical Garden, Chinese Academy of Sciences, Turpan, China
Xiaoshuang Li State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Ürümqi, China Xinjiang Key Laboratory of Conservation and Utilization of Plant Gene Resources, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Ürümqi, China Turpan Eremophytes Botanical Garden, Chinese Academy of Sciences, Turpan, China
Daoyuan Zhang State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Ürümqi, China Xinjiang Key Laboratory of Conservation and Utilization of Plant Gene Resources, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Ürümqi, China Turpan Eremophytes Botanical Garden, Chinese Academy of Sciences, Turpan, China

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Elango D, Wang W, Thudi M, Sebastiar S, Ramadoss BR, Varshney RK. Genome-wide association mapping of seed oligosaccharides in chickpea. FRONTIERS IN PLANT SCIENCE 2022;13:1024543. [PMID: 36352859 PMCID: PMC9638045 DOI: 10.3389/fpls.2022.1024543] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/02/2022] [Accepted: 10/10/2022] [Indexed: 06/16/2023]

Liu Z, Yu W, Zhang X, Huang J, Wang W, Miao M, Hu L, Wan C, Yuan Y, Wu B, Lyu M. Genome-Wide Identification and Expression Analysis of Chitinase-like Genes in Petunia axillaris. PLANTS (BASEL, SWITZERLAND) 2022;11:1269. [PMID: 35567270 PMCID: PMC9100346 DOI: 10.3390/plants11091269] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/13/2022] [Revised: 05/02/2022] [Accepted: 05/04/2022] [Indexed: 06/15/2023]

Affiliation(s)

Zhuoyi Liu College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Z.L.); (W.Y.); (X.Z.); (J.H.); (W.W.); (M.M.); (L.H.); (C.W.); (Y.Y.); (B.W.) College of Horticulture, South China Agriculture University, Guangzhou 510642, China
Wenfei Yu College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Z.L.); (W.Y.); (X.Z.); (J.H.); (W.W.); (M.M.); (L.H.); (C.W.); (Y.Y.); (B.W.)
Xiaowen Zhang College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Z.L.); (W.Y.); (X.Z.); (J.H.); (W.W.); (M.M.); (L.H.); (C.W.); (Y.Y.); (B.W.)
Jinfeng Huang College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Z.L.); (W.Y.); (X.Z.); (J.H.); (W.W.); (M.M.); (L.H.); (C.W.); (Y.Y.); (B.W.)
Wei Wang College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Z.L.); (W.Y.); (X.Z.); (J.H.); (W.W.); (M.M.); (L.H.); (C.W.); (Y.Y.); (B.W.)
Miao Miao College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Z.L.); (W.Y.); (X.Z.); (J.H.); (W.W.); (M.M.); (L.H.); (C.W.); (Y.Y.); (B.W.)
Li Hu College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Z.L.); (W.Y.); (X.Z.); (J.H.); (W.W.); (M.M.); (L.H.); (C.W.); (Y.Y.); (B.W.)
Chao Wan College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Z.L.); (W.Y.); (X.Z.); (J.H.); (W.W.); (M.M.); (L.H.); (C.W.); (Y.Y.); (B.W.)
Yuan Yuan College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Z.L.); (W.Y.); (X.Z.); (J.H.); (W.W.); (M.M.); (L.H.); (C.W.); (Y.Y.); (B.W.)
Binghua Wu College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Z.L.); (W.Y.); (X.Z.); (J.H.); (W.W.); (M.M.); (L.H.); (C.W.); (Y.Y.); (B.W.)
Meiling Lyu College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Z.L.); (W.Y.); (X.Z.); (J.H.); (W.W.); (M.M.); (L.H.); (C.W.); (Y.Y.); (B.W.)

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