Identification of HbHSP90 gene family and characterization HbHSP90.1 as a candidate gene for stress response in rubber tree

Single-cell transcriptomic analyses reveal cellular and molecular patterns of rubber tree response to early powdery mildew infection

As a perennial woody plant, the rubber tree (Hevea brasiliensis) must adapt to various environmental challenges through gene expression in multiple cell types. It is still unclear how genes in this species are expressed at the cellular level and the precise mechanisms by which cells respond transcriptionally to environmental stimuli, especially in the case of pathogen infection. Here, we characterized the transcriptomes in Hevea leaves during early powdery mildew infection using single-cell RNA sequencing. We identified 10 cell types and constructed the first single-cell atlas of Hevea leaves. Distinct gene expression patterns of the cell clusters were observed under powdery mildew infection, which was especially significant in the epidermal cells. Most of the genes involved in host-pathogen interactions in epidermal cells exhibited a pattern of dramatically increased expression with increasing pseudotime. Interestingly, we found that the HbCNL2 gene, encoding a nucleotide-binding leucine-rich repeat protein, positively modulated the defence of rubber leaves against powdery mildew. Overexpression of the HbCNL2 gene triggered a typical cell death phenotype in tobacco leaves and a higher level of reactive oxygen species in the protoplasts of Hevea leaves. The HbCNL2 protein was located in the cytomembrane and nucleus, and its leucine-rich repeat domain interacted with the histidine kinase-like ATPase domain of the molecular chaperone HbHSP90 in the nucleus. Collectively, our results provide the first observation of the cellular and molecular responses of Hevea leaves to biotrophic pathogen infection and can guide the identification of disease-resistance genes in this important tree species.

Genome-Wide Study of Hsp90 Gene Family in Cabbage (Brassica oleracea var. capitata L.) and Their Imperative Roles in Response to Cold Stress

Heat shock protein 90 (Hsp90) plays an important role in plant developmental regulation and defensive reactions. Several plant species have been examined for the Hsp90 family gene. However, the Hsp90 gene family in cabbage has not been well investigated to date. In this study, we have been discovered 12 BoHsp90 genes in cabbage (Brassica oleracea var. capitata L.). These B. oleracea Hsp90 genes were classified into five groups based on phylogenetic analysis. Among the five groups, group one contains five Hsp90 genes, including BoHsp90-1, BoHsp90-2, BoHsp90-6, BoHsp90-10, and BoHsp90-12. Group two contains three Hsp90 genes, including BoHsp90-3, BoHsp90-4, and BoHsp90. Group three only includes one Hsp90 gene, including BoHsp90-9. Group four were consisting of three Hsp90 genes including BoHsp90-5, BoHsp90-7, and BoHsp90-8, and there is no Hsp90 gene from B. oleracea in the fifth group. Synteny analysis showed that a total of 12 BoHsp90 genes have a collinearity relationship with 5 Arabidopsis genes and 10 Brassica rapa genes. The promoter evaluation revealed that the promoters of B. oleracea Hsp90 genes included environmental stress-related and hormone-responsive cis-elements. RNA-seq data analysis indicates that tissue-specific expression of BoHsp90-9 and BoHsp90-5 were highly expressed in stems, leaves, silique, and flowers. Furthermore, the expression pattern of B. oleracea BoHsp90 exhibited that BoHsp90-2, BoHsp90-3, BoHsp90-7, BoHsp90-9, BoHsp90-10, and BoHsp90-11 were induced under cold stress, which indicates these Hsp90 genes perform a vital role in cold acclimation and supports in the continual of normal growth and development process. The cabbage Hsp90 gene family was found to be differentially expressed in response to cold stress, suggesting that these genes play an important role in cabbage growth and development under cold conditions.

A Study on the Vulnerability of the Gross Primary Production of Rubber Plantations to Regional Short-Term Flash Drought over Hainan Island

Rapidly developing droughts, including flash droughts, have occurred frequently in recent years, causing significant damage to agroforestry ecosystems, and they are expected to increase in the future due to global warming. The artificial forest area in China is the largest in the world, and its carbon budget is crucial to the global carbon sink. As the most prominent plantation plant in the tropics, the rubber (Hevea brasiliensis (Willd. ex A. Juss.) Muell. Arg.) ecosystem not only has important economic significance, but also has the potential to be a major natural carbon sink in hot areas. Frequent drought events have a significant impact on rubber ecosystem productivity, yet there have been few reports on the vulnerability of rubber productivity to drought. The objective of this study is to evaluate the vulnerability of rubber ecosystem gross primary production (GPP) to short-term flash drought (STFD) in Hainan Island, utilizing the localized EC-LUE model (eddy covariance–light use efficiency) validated by flux tower observations as the research tool to conduct the scenario simulations which defined by standard relative humidity index (SRHI), in a total of 96 scenarios (timing × intensity). The results show that, in terms of time, the rubber ecosystem in Hainan Island has the highest vulnerability to STFD during the early rainy season and the lowest at the end of the rainy season. From the dry season to the rainy season, the impact of STFD gradually extends to the northeast. Spatially, the vulnerability of the northern island is higher than that of the southern island and that of the western part is higher than that of eastern Hainan Island. With the increase in STFD intensity, the spatial distribution center of the vulnerability of rubber ecosystem GPP in Hainan Island gradually moves southward. The spatiotemporal pattern of the vulnerability of the rubber ecosystem GPP to STFD over Hainan Island plotted by this study is expected to provide decision makers with more accurate information on the prevention and control of drought disaster risk in rubber ecosystems.