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Oh SI, Sheet S, Bui VN, Dao DT, Bui NA, Kim TH, Cha J, Park MR, Hur TY, Jung YH, Kim B, Lee HS, Cho A, Lim D. Transcriptome profiles of organ tissues from pigs experimentally infected with African swine fever virus in early phase of infection. Emerg Microbes Infect 2024; 13:2366406. [PMID: 38847223 PMCID: PMC11210422 DOI: 10.1080/22221751.2024.2366406] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2024] [Accepted: 06/05/2024] [Indexed: 06/27/2024]
Abstract
African swine fever, caused by African swine fever virus (ASFV), is a highly contagious and fatal disease that poses a significant threat to the global pig industry. The limited information on ASFV pathogenesis and ASFV-host interactions has recently prompted numerous transcriptomic studies. However, most of these studies have focused on elucidating the transcriptome profiles of ASFV-infected porcine alveolar macrophages in vitro. Here, we analyzed dynamic transcriptional patterns in vivo in nine organ tissues (spleen, submandibular lymph node, mesenteric lymph node, inguinal lymph node, tonsils, lungs, liver, kidneys, and heart) obtained from pigs in the early stages of ASFV infection (1 and 3 d after viremia). We observed rapid spread of ASFV to the spleen after viremia, followed by broad transmission to the liver and lungs and subsequently, the submandibular and inguinal lymph nodes. Profound variations in gene expression patterns were observed across all organs and at all time-points, providing an understanding of the distinct defence strategies employed by each organ against ASFV infection. All ASFV-infected organs exhibited a collaborative response, activating immune-associated genes such as S100A8, thereby triggering a pro-inflammatory cytokine storm and interferon activation. Functional analysis suggested that ASFV exploits the PI3K-Akt signalling pathway to evade the host immune system. Overall, our findings provide leads into the mechanisms underlying pathogenesis and host immune responses in different organs during the early stages of infection, which can guide further explorations, aid the development of efficacious antiviral strategies against ASFV, and identify valuable candidate gene targets for vaccine development.
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Affiliation(s)
- Sang-Ik Oh
- National Institute of Animal Science, Rural Development Administration, Wanju, Republic of Korea
- Laboratory of Veterinary Pathology and Biosafety Research Institute, College of Veterinary Medicine, Jeonbuk National University, Iksan, Republic of Korea
| | - Sunirmal Sheet
- National Institute of Animal Science, Rural Development Administration, Wanju, Republic of Korea
| | - Vuong Nghia Bui
- Virology Department, National Institute of Veterinary Research, Hanoi, Vietnam
| | - Duy Tung Dao
- Virology Department, National Institute of Veterinary Research, Hanoi, Vietnam
| | - Ngoc Anh Bui
- Virology Department, National Institute of Veterinary Research, Hanoi, Vietnam
| | - Tae-Hun Kim
- National Institute of Animal Science, Rural Development Administration, Wanju, Republic of Korea
- TNT Research. Co., Ltd., R&D center, Sejong-si, Republic of Korea
| | - Jihye Cha
- National Institute of Animal Science, Rural Development Administration, Wanju, Republic of Korea
| | - Mi-Rim Park
- National Institute of Animal Science, Rural Development Administration, Wanju, Republic of Korea
| | - Tai-Young Hur
- National Institute of Animal Science, Rural Development Administration, Wanju, Republic of Korea
| | - Young-Hun Jung
- National Institute of Animal Science, Rural Development Administration, Wanju, Republic of Korea
| | - Bumseok Kim
- Laboratory of Veterinary Pathology and Biosafety Research Institute, College of Veterinary Medicine, Jeonbuk National University, Iksan, Republic of Korea
| | - Hu Suk Lee
- International Livestock Research Institute, Hanoi, Vietnam
- College of Veterinary Medicine, Chungnam National University, Daejoen, Republic of Korea
| | - Ara Cho
- National Institute of Animal Science, Rural Development Administration, Wanju, Republic of Korea
| | - Dajeong Lim
- National Institute of Animal Science, Rural Development Administration, Wanju, Republic of Korea
- Department of Animal Resources Science, College of Agriculture and Life Sciences, Chungnam National University, Daejoen, Republic of Korea
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Sheet S, Jang SS, Kim JH, Park W, Kim D. A transcriptomic analysis of skeletal muscle tissues reveals promising candidate genes and pathways accountable for different daily weight gain in Hanwoo cattle. Sci Rep 2024; 14:315. [PMID: 38172605 PMCID: PMC10764957 DOI: 10.1038/s41598-023-51037-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Accepted: 12/29/2023] [Indexed: 01/05/2024] Open
Abstract
Cattle traits like average daily weight gain (ADG) greatly impact profitability. Selecting based on ADG considering genetic variability can lead to economic and genetic advancements in cattle breeding. This study aimed to unravel genetic influences on ADG variation in Hanwoo cattle at the skeletal muscle transcriptomic level. RNA sequencing was conducted on longissimus dorsi (LD), semimembranosus (SB), and psoas major (PM) muscles of 14 steers assigned to same feed, grouped by low (≤ 0.71 kg) and high (≥ 0.77 kg) ADG. At P ≤ 0.05 and log2fold > 1.5, the distinct pattern of gene expression was identified with 184, 172, and 210 differentially expressed genes in LD, SB, and PM muscles, respectively. Tissue-specific responses to ADG variation were evident, with myogenesis and differentiation associated JAK-STAT signaling pathway and prolactin signaling pathways enriched in LD and SB muscles, while adipogenesis-related PPAR signaling pathways were enriched in PM muscle. Key hub genes (AXIN2, CDKN1A, MYC, PTGS2, FZD5, SPP1) were upregulated and functionally significant in muscle growth and differentiation. Notably, DPP6, CDKN1A, and FZD5 emerged as possible candidate genes linked to ADG variation. These findings enhance our understanding of genetic factors behind ADG variation in Hanwoo cattle, illuminating skeletal muscle mechanisms influencing ADG.
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Affiliation(s)
- Sunirmal Sheet
- Animal Genomics and Bioinformatics Division, Rural Development Administration, National Institute of Animal Science, Wanju, 55365, Republic of Korea
| | - Sun Sik Jang
- Hanwoo Research Institute, National Institute of Animal Science, RDA, Pyeongchang, 25342, Republic of Korea
| | - Jae Hwan Kim
- Animal Genomics and Bioinformatics Division, Rural Development Administration, National Institute of Animal Science, Wanju, 55365, Republic of Korea
| | - Woncheoul Park
- Animal Genomics and Bioinformatics Division, Rural Development Administration, National Institute of Animal Science, Wanju, 55365, Republic of Korea.
| | - Dahye Kim
- Animal Genomics and Bioinformatics Division, Rural Development Administration, National Institute of Animal Science, Wanju, 55365, Republic of Korea.
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