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Hu W, Zheng N, Zhang Y, Li S, Bartlam M, Wang Y. Metagenomics analysis reveals effects of salinity fluctuation on diversity and ecological functions of high and low nucleic acid content bacteria. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 933:173186. [PMID: 38744390 DOI: 10.1016/j.scitotenv.2024.173186] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2024] [Revised: 05/09/2024] [Accepted: 05/10/2024] [Indexed: 05/16/2024]
Abstract
Salinity is a critical environmental factor in marine ecosystems and has complex and wide-ranging biological effects. However, the effects of changing salinity on diversity and ecological functions of high nucleic acid (HNA) and low nucleic acid (LNA) bacteria are not well understood. In this study, we used 16S rRNA sequencing and metagenomic sequencing analysis to reveal the response of HNA and LNA bacterial communities and their ecological functions to salinity, which was decreased from 26 ‰ to 16 ‰. The results showed that salinity changes had significant effects on the community composition of HNA and LNA bacteria. Among LNA bacteria, 14 classes showed a significant correlation between relative abundance and salinity. Salinity changes can lead to the transfer of some bacteria from HNA bacteria to LNA bacteria. In the network topology relationship, the complexity of the network between HNA and LNA bacterial communities gradually decreased with decreased salinity. The abundance of some carbon and nitrogen cycling genes in HNA and LNA bacteria varied with salinity. Overall, this study demonstrates the effects of salinity on diversity and ecological functions and suggests the importance of salinity in regulating HNA and LNA bacterial communities and functions.
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Affiliation(s)
- Wei Hu
- Key Laboratory of Pollution Processes and Environmental Criteria (Ministry of Education), Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai International Advanced Research Institute (Shenzhen Futian), Nankai University, Tianjin, China
| | - Ningning Zheng
- Key Laboratory of Pollution Processes and Environmental Criteria (Ministry of Education), Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai International Advanced Research Institute (Shenzhen Futian), Nankai University, Tianjin, China
| | - Yi Zhang
- Key Laboratory of Pollution Processes and Environmental Criteria (Ministry of Education), Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai International Advanced Research Institute (Shenzhen Futian), Nankai University, Tianjin, China
| | - Shuhan Li
- Key Laboratory of Pollution Processes and Environmental Criteria (Ministry of Education), Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai International Advanced Research Institute (Shenzhen Futian), Nankai University, Tianjin, China
| | - Mark Bartlam
- State Key Laboratory of Medicinal Chemical Biology, College of Life Sciences, Nankai International Advanced Research Institute (Shenzhen Futian), Nankai University, Tianjin, China.
| | - Yingying Wang
- Key Laboratory of Pollution Processes and Environmental Criteria (Ministry of Education), Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai International Advanced Research Institute (Shenzhen Futian), Nankai University, Tianjin, China.
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Li F, Sun YY, Zhang YJ, Liu XJ, Du ZJ, Gong Y. Winogradskyella pelagia sp. nov., isolated from coastal sediment. Int J Syst Evol Microbiol 2024; 74. [PMID: 39046891 DOI: 10.1099/ijsem.0.006470] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/27/2024] Open
Abstract
An orange-pigmented, Gram-stain-negative, strictly aerobic, non-flagellated and rod-shaped bacterium, designated strain DF17T, was isolated from coastal sediment collected from Jingzi Wharf, Weihai, PR China. The optimal growth conditions were determined to be at 30 °C, pH 7.5, and in 3 % (w/v) NaCl. According to phylogenetic analysis of the 16S rRNA gene sequence, strain DF17T showed the highest sequence similarity of 96.9 % to Winogradskyella aquimaris KCTC 23502T. The DNA G+C content was 35.8 mol%, and the major fatty acids were iso-C15 : 1 G, iso-C15 : 0, and iso-C17 : 0 3-OH. The major polar lipids were two aminoglycolipids, one phosphatidylethanolamine and four unidentified lipids. The predominant respiratory quinone was menaquinone-6 (MK-6). The average nucleotide identity, digital DNA-DNA hybridization, and amino acid identity values between strain DF17T and other Winogradskyella species were below the species delineation thresholds of 69.35-72.95 %, 16.9-19.6 % and 71.25-78.93 %, respectively. On the basis of its phenotypic, genetic and physiological characteristics, strain DF17T is suggested to represent a novel species of the genus Winogradskyella, for which the name Winogradskyella pelagia sp. nov. is proposed. The type strain is DF17T (MCCC 1H00456T=KCTC 82421T).
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Affiliation(s)
- Fan Li
- Marine College, Shandong University, Weihai, Shandong 264209, PR China
| | - Yang-Yang Sun
- Marine College, Shandong University, Weihai, Shandong 264209, PR China
- Joint Science College, Shandong University, Weihai, Shandong 264209, PR China
| | - Ya-Jing Zhang
- Marine College, Shandong University, Weihai, Shandong 264209, PR China
| | - Xin-Jiang Liu
- Marine College, Shandong University, Weihai, Shandong 264209, PR China
| | - Zong-Jun Du
- Marine College, Shandong University, Weihai, Shandong 264209, PR China
- Weihai Research Institute of Industrial Technology of Shandong University, Weihai 264209, PR China
| | - Ya Gong
- Marine College, Shandong University, Weihai, Shandong 264209, PR China
- Weihai Research Institute of Industrial Technology of Shandong University, Weihai 264209, PR China
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Imtiaz F, Rashid J, Kumar R, Eniola JO, Barakat MAEF, Xu M. Recent advances in visible light driven inactivation of bloom forming blue-green algae using novel nano-composites: Mechanism, efficiency and fabrication approaches. ENVIRONMENTAL RESEARCH 2024; 248:118251. [PMID: 38278506 DOI: 10.1016/j.envres.2024.118251] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Revised: 12/21/2023] [Accepted: 01/07/2024] [Indexed: 01/28/2024]
Abstract
Over the years, algae have proved to be a water pollutant due to global warming, climate change, and the unregulated addition of organic compounds in water bodies from diffused resources. Harmful algal blooms (HABs) are severely affecting the health of humans and aquatic ecosystems. Among available anti-blooming technologies, semiconductor photocatalysis has come forth as an effective alternative. In the recent past, literature has been modified extensively with a decisive knowledge regarding algal invasion, desired preparation of nanomaterials with enhanced visible light absorption capacity and mechanisms for algal cell denaturation. The motivation behind this review article was to gather algal inactivation data in a systematic way based on various research studies, including the construction of nanoparticles and purposely to test their anti-algal activities under visible irradiation. Additionally, this article mentions variety of starting materials employed for preparation of various nano-powders with focus on their synthesis routes, analytical techniques as well as proposed mechanisms for lost cellular integrity in context of reduced chlorophyll' a' level, cell rapture, cell leakage and damages to other physiological constituents; credited to oxidative damage initiated by reactive oxidation species (ROS). Various floating and recyclable composited catalysts Ag2CO3-N: GO, Ag/AgCl@ZIF-8, Ag2CrO4-g-C3N4-TiO2/mEP proved to be game-changers owing to their enhanced VL absorption, adsorption, stability, separation and reusability. An outlook for the generalized limitations of published reports, cost estimations for practical implementation, issues and challenges faced by nano-photocatalysts and possible opportunities for future studies are also proposed. This review will be able to provide vast insights for coherent fabrication of catalysts, breakthroughs in experimental methodologies and help in elaboration of damage mechanisms.
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Affiliation(s)
- Fatima Imtiaz
- Department of Environmental Sciences, Faculty of Biological Sciences, Quaid-i-Azam University, Islamabad, 45320, Pakistan
| | - Jamshaid Rashid
- Department of Environmental Sciences, Faculty of Biological Sciences, Quaid-i-Azam University, Islamabad, 45320, Pakistan; BNU-HKUST Laboratory for Green Innovation, Advanced Institute of Natural Sciences, Beijing Normal University at Zhuhai, Zhuhai, 519087, China.
| | - Rajeev Kumar
- Department of Environment, Faculty of Environmental Sciences, King Abdulaziz University, Jeddah 21589, Saudi Arabia
| | - Jamiu O Eniola
- Department of Environment, Faculty of Environmental Sciences, King Abdulaziz University, Jeddah 21589, Saudi Arabia
| | - Mohamed Abou El-Fetouh Barakat
- Department of Environment, Faculty of Environmental Sciences, King Abdulaziz University, Jeddah 21589, Saudi Arabia; Central Metallurgical R & D Institute, Helwan, 11421, Cairo, Egypt
| | - Ming Xu
- BNU-HKUST Laboratory for Green Innovation, Advanced Institute of Natural Sciences, Beijing Normal University at Zhuhai, Zhuhai, 519087, China.
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Corson HK, Millette NC. Margalefidinium polykrikoides dinoflagellate blooms increase mortality of Acartia tonsa copepods. HARMFUL ALGAE 2024; 135:102634. [PMID: 38830711 DOI: 10.1016/j.hal.2024.102634] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2023] [Revised: 04/18/2024] [Accepted: 04/25/2024] [Indexed: 06/05/2024]
Abstract
Previous research on phytoplankton blooms has often focused on the initiation of blooms, while studies on the mechanisms underlying bloom decline and termination have been more limited. This study aimed to explore the extent of which Acartia tonsa (copepod) grazing does or does not contribute to Margalefidinium polykrikoides (dinoflagellate) bloom decline. M. polykrikoides is a prominent harmful algal bloom (HAB) species that forms dense blooms in coastal and estuarine systems around the world with known ichthyotoxic effects. Sampling occurred in the lower York River Estuary, Virginia, USA in 2021 and 2022 during two M. polykrikoides blooms. Prey removal experiments were conducted using organisms collected from the field to estimate A. tonsa ingestion rates on M. polykrikoides. While A. tonsa was capable of ingesting M. polykrikoides at low abundance, when M. polykrikoides abundance exceeded 2000 cells mL-1, A. tonsa experienced nearly 100% mortality in the 24-hour prey removal experiments. This suggests that A. tonsa likely cannot exert any top-down control on M. polykrikoides blooms, rather, at high concentrations, M. polykrikoides may act as its own grazing deterrent. Extensive M. polykrikoides blooms could therefore continue to persist due to a reduction in grazing pressure, rather than an increase. This would suggest that the decline of M. polykrikoides blooms is likely caused by another factor. As the frequency, duration, and magnitude of HABs are expected to increase in the future, these findings provide key insights to the trophic interactions that may be influencing the duration of M. polykrikoides blooms.
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Affiliation(s)
- Heather K Corson
- Virginia Institute of Marine Science, William & Mary, Post Office Box 1346, 1370 Greate Road, Gloucester Point, VA 23062, USA.
| | - Nicole C Millette
- Virginia Institute of Marine Science, William & Mary, Post Office Box 1346, 1370 Greate Road, Gloucester Point, VA 23062, USA
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Louati I, Nunan N, Tambosco K, Bernard C, Humbert JF, Leloup J. The phyto-bacterioplankton couple in a shallow freshwater ecosystem: Who leads the dance? HARMFUL ALGAE 2023; 126:102436. [PMID: 37290884 DOI: 10.1016/j.hal.2023.102436] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Revised: 04/20/2023] [Accepted: 04/20/2023] [Indexed: 06/10/2023]
Abstract
Bloom-forming phytoplankton dynamics are still unpredictable, even though it is known that several abiotic factors, such as nutrient availability and temperature, are key factors for bloom development. We investigated whether biotic factors, i.e. the bacterioplankton composition (via 16SrDNA metabarcoding), were correlated with phytoplankton dynamics, through a weekly monitoring of a shallow lake known to host recurrent cyanobacterial blooms. We detected concomitant changes in both bacterial and phytoplankton community biomass and diversity. During the bloom event, a significant decrease in phytoplankton diversity, was detected, with a first co-dominance of Ceratium, Microcystis and Aphanizomenon, followed by a co-dominance of the two cyanobacterial genera. In the same time, we observed a decrease of the particle-associated (PA) bacterial richness and the emergence of a specific bacterial consortium that was potentially better adapted to the new nutritional niche. Unexpectedly, changes in PA bacterial communities occurred just before the development the emergence of the phytoplanktonic bloom and the associated modification of the phytoplanktonic community composition, suggesting that changes in environmental conditions leading to the bloom, were first sensed by the bacterial PA community. This last was quite stable throughout the bloom event, even though there were changes in the blooming species, suggesting that the association between cyanobacterial species and bacterial communities may not be as tight as previously described for monospecific blooming communities. Finally, the dynamics of the free-living (FL) bacterial communities displayed a different trajectory from those of the PA and phytoplankton communities. This FL communities can be viewed as a reservoir for bacterial recruitment for the PA fraction. Altogether, these data also highlight s that the spatial organization within these different microenvironments in the water column is a relevant factor in the structuring of these communities.
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Affiliation(s)
- Imen Louati
- Sorbonne Université, UMR 7618 CNRS-INRA- RD-Paris Cité-UPEC, Institut d'Ecologie et des Sciences de l'Environnement de Paris (iEES-Paris), 4 place Jussieu, Paris cedex 05 75252, France
| | - Naoise Nunan
- Sorbonne Université, UMR 7618 CNRS-INRA- RD-Paris Cité-UPEC, Institut d'Ecologie et des Sciences de l'Environnement de Paris (iEES-Paris), 4 place Jussieu, Paris cedex 05 75252, France; Department of Soil and Environment, Swedish University of Agricultural Sciences, P.O. Box 7014, Uppsala 75007, Sweden
| | - Kevin Tambosco
- Sorbonne Université, UMR 7618 CNRS-INRA- RD-Paris Cité-UPEC, Institut d'Ecologie et des Sciences de l'Environnement de Paris (iEES-Paris), 4 place Jussieu, Paris cedex 05 75252, France
| | - Cécile Bernard
- Muséum National d'Histoire Naturelle, UMR 7245 CNRS-MNHN, Molécules de Communication et Adaptation des Microorganismes, Paris, France
| | - Jean-François Humbert
- Sorbonne Université, UMR 7618 CNRS-INRA- RD-Paris Cité-UPEC, Institut d'Ecologie et des Sciences de l'Environnement de Paris (iEES-Paris), 4 place Jussieu, Paris cedex 05 75252, France
| | - Julie Leloup
- Sorbonne Université, UMR 7618 CNRS-INRA- RD-Paris Cité-UPEC, Institut d'Ecologie et des Sciences de l'Environnement de Paris (iEES-Paris), 4 place Jussieu, Paris cedex 05 75252, France.
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