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Liu XM, Xia QY, Ju XH. Theoretical study on optimizing dipeptidomimetic isocyanonaphthalene chemosensor and the fluorescence mechanism for detecting Hg 2. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024; 322:124835. [PMID: 39024787 DOI: 10.1016/j.saa.2024.124835] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2024] [Revised: 07/10/2024] [Accepted: 07/13/2024] [Indexed: 07/20/2024]
Abstract
The excited (S1) state charge distribution characteristics and fluorescence mechanism of fluorescence probes benzyl (6-cyano-2-naphthoyl)-L-valinate (NPI) and benzyl (6-amino-2-naphthoyl)-L-valinate (NPA) have been discussed using density functional theory (DFT) and time-dependent density functional theory (TD-DFT). Further analysis by constructing a torsional potential energy curve (PEC) shows that a well-defined minimum energy conformation is observed when the C-C single bond between the valine benzyl ester and naphthalene ring in NPI rotates. For NPA, the most stable conformation is the naphthalene ring conformation with dihedral angle N2C1C2C3 of -30.60°, whose total energy is 0.17 kcal/mol lower than that of the second most stable conformer. The frontier molecular orbitals (FMOs) demonstrate that NPI exhibits a low degree of charge coupling, and the oscillator intensity is close to zero, indicating that it is not conducive to luminescence. However, in the S1 state, the oscillator strength of NPA is 1.2044, which is a bright state, resulting in the strong emitting. Additionally, fluorescence imaging is favored as a visual observation technique, and Stokes shift is an important physical parameter to measure fluorescence. According to the idea that changing the number and position of functional groups can affect the photophysical properties of fluorescent dyes, o-NPDI, p-NPDI and m-NPDI dyes were newly designed and o-NPDA, p-NPDA, m-NPDA produced after recognition of Hg2+. The spectral performance results show that the newly designed fluorescent dye (p-NPDA) can not only emit in the near infrared region after recognizing Hg2+, but also has a large Stokes shift (236 nm). This indirectly reflects that para-substitution is more conducive to Stokes shift, and has become one of the strategies for fluorescent dye design.
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Affiliation(s)
- Xiu-Min Liu
- Key Laboratory of Soft Chemistry and Functional Materials of MOE, School of Chemistry and Chemical Engineering, Nanjing University of Science and Technology, Nanjing 210094, PR China
| | - Qi-Ying Xia
- School of Chemistry and Chemical Engineering, Linyi University, Linyi 276005, PR China.
| | - Xue-Hai Ju
- Key Laboratory of Soft Chemistry and Functional Materials of MOE, School of Chemistry and Chemical Engineering, Nanjing University of Science and Technology, Nanjing 210094, PR China.
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Düşünceli SD, Şahan MH, Kaloğlu M, Üstün E, Özdemir İ. Applications of quinoxaline‐bridged bis(benzimidazolium) salts as ligand sources for the palladium‐catalyzed Suzuki and Heck cross‐coupling reactions in an aqueous medium. J CHIN CHEM SOC-TAIP 2022. [DOI: 10.1002/jccs.202200304] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Serpil Demir Düşünceli
- Faculty of Science and Arts, Department of Chemistry İnönü University Malatya Turkey
- Catalysis Research and Application Center İnönü University Malatya Turkey
- Drug Application and Research Center İnönü University Malatya Turkey
| | - Mehmet Hanifi Şahan
- Faculty of Science and Arts, Department of Chemistry İnönü University Malatya Turkey
| | - Murat Kaloğlu
- Faculty of Science and Arts, Department of Chemistry İnönü University Malatya Turkey
- Catalysis Research and Application Center İnönü University Malatya Turkey
- Drug Application and Research Center İnönü University Malatya Turkey
| | - Elvan Üstün
- Faculty of Science and Art, Department of Chemistry Ordu University Ordu Turkey
| | - İsmail Özdemir
- Faculty of Science and Arts, Department of Chemistry İnönü University Malatya Turkey
- Catalysis Research and Application Center İnönü University Malatya Turkey
- Drug Application and Research Center İnönü University Malatya Turkey
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3
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Mohammadi Ziarani G, Roshankar S, Mohajer F, Badiei A, Karimi-Maleh H, Gaikwad SV. Molecular docking and optical sensor studies based on 2,4-diamino pyrimidine-5-carbonitriles for detection of Hg 2. ENVIRONMENTAL RESEARCH 2022; 212:113245. [PMID: 35398086 DOI: 10.1016/j.envres.2022.113245] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2021] [Revised: 02/03/2022] [Accepted: 04/01/2022] [Indexed: 06/14/2023]
Abstract
An organic chemical sensor based on pyrimidine was successfully produced through the green reaction between aromatic aldehyde, malononitrile, and guanidine carbonate using SBA-Pr-SO3H. This fluorescence intensity of chemosensor (2,4-diamino-6-(phenyl)pyrimidine-5-carbonitrile) decreases by the addition of Hg2+ and its detection limit is about 14.89 × 10-5 M, in fact, through the green synthesis, the ligand was yielded to detect Hg2+ and the importance of ligand was considered in docking studies. The molecular docking of 2,4-diamino-6-(phenyl)pyrimidine-5-carbonitrile compound has been done with the protein selective estrogen receptor 5ACC complexed with (Azd9496), Human Anaplastic Lymphoma Kinase Pdb; 2xp2 complex with crizotinib (PF-02341066) and human wee1 kinase Pdb; 5vc3 complexed with bosutinib. The ligands 2,4-diamino-6-(phenyl)pyrimidine-5-carbonitrile generate very good docking results with the protein Pdb; 2xp2, which is responsible for effective tumor growth inhibition.
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Affiliation(s)
| | - Shima Roshankar
- Department of Chemistry, Faculty of Physics and Chemistry, Alzahra University, Tehran, Iran
| | - Fatemeh Mohajer
- Department of Chemistry, Faculty of Physics and Chemistry, Alzahra University, Tehran, Iran
| | - Alireza Badiei
- School of Chemistry, College of Science, University of Tehran, Tehran, Iran
| | - Hassan Karimi-Maleh
- School of Resources and Environment, University of Electronics Science and Technology of China (UESTC), 611731, China; Department of Chemical Engineering, Quchan University of Technology, Quchan, Iran; Department of Chemical Sciences, University of Johannesburg, Doornfontein Campus, 2028, Johannesburg, P.O. Box 17011, South Africa.
| | - Sunil V Gaikwad
- Department of Chemistry, Dr. D. Y. Patil ACS Women's College, Pimpri Pune, MH, 411018, India
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Jeyanthi D, Joel C, Bennie RB, Livingston DJ, Balakrishnan C. Crystal structure and chemosensing property of benzimidazole-based probe towards detection of multiple analytes – A combined experimental and DFT approach. J Photochem Photobiol A Chem 2022. [DOI: 10.1016/j.jphotochem.2022.113950] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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5
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Udhayakumari D. Review on fluorescent sensors-based environmentally related toxic mercury ion detection. J INCL PHENOM MACRO 2022. [DOI: 10.1007/s10847-022-01138-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
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6
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Ali S, Mansha M, Baig N, Khan SA. Cost-Effective and Selective Fluorescent Chemosensor (Pyr-NH@SiO2 NPs) for Mercury Detection in Seawater. NANOMATERIALS 2022; 12:nano12081249. [PMID: 35457957 PMCID: PMC9024866 DOI: 10.3390/nano12081249] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/12/2022] [Revised: 03/29/2022] [Accepted: 04/02/2022] [Indexed: 11/23/2022]
Abstract
The release of mercury into the environment has adverse effects on humans and aquatic species, even at very low concentrations. Pyrene and its derivatives have interesting fluorescence properties that can be utilized for mercury (Hg2+) ion sensing. Herein, we reported the highly selective pyrene-functionalized silica nanoparticles (Pyr-NH@SiO2 NPs) for chemosensing mercury (Hg2+) ions in a seawater sample. The Pyr-NH@SiO2 NPs were synthesized via a two-step protocol. First, a modified Stöber method was adopted to generate amino-functionalized silica nanoparticles (NH2@SiO2 NPs). Second, 1-pyrenecarboxylic acid was coupled to NH2@SiO2 NPs using a peptide coupling reaction. As-synthesized NH2@SiO2 NPs and Pyr-NH@SiO2 NPs were thoroughly investigated by 1H-NMR, FTIR, XRD, FESEM, EDS, TGA, and BET surface area analysis. The fluorescent properties were examined in deionized water under UV-light illumination. Finally, the developed Pyr-NH@SiO2 NPs were tested as a chemosensor for Hg2+ ions detection in a broad concentration range (0–50 ppm) via photoluminescence (PL) spectroscopy. The chemosensor can selectively detect Hg2+ ions in the presence of ubiquitous ions (Na+, K+, Ca2+, Mg2+, Ba2+, Ag+, and seawater samples). The quenching of fluorescence properties with Hg2+ ions (LOD: 10 ppb) indicates that Pyr-NH@SiO2 NPs can be effectively utilized as a promising chemosensor for mercury ion detection in seawater environments.
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Affiliation(s)
- Shahid Ali
- Center of Research Excellence in Nanotechnology, King Fahd University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia;
- Interdisciplinary Research Center for Hydrogen and Energy Storage, King Fahd University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia;
| | - Muhammad Mansha
- Interdisciplinary Research Center for Hydrogen and Energy Storage, King Fahd University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia;
| | - Nadeem Baig
- Interdisciplinary Research Centre for Membranes and Water Security, King Fahd University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia;
| | - Safyan Akram Khan
- Center of Research Excellence in Nanotechnology, King Fahd University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia;
- Interdisciplinary Research Center for Hydrogen and Energy Storage, King Fahd University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia;
- Correspondence: ; Tel.: +966-13-860-7261
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Parsaei-Khomami A, Badiei A, Ghavami ZS, Ghasemi JB. A new fluorescence probe for simultaneous determination of Fe2+ and Fe3+ by orthogonal signal correction-principal component regression. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.131978] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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8
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Kumar M, Kumar A, Kishor S, Kumar S, Kumar A, Manav N, Bhagi A, Kumar S, John RP. N-diethylaminosalicylidene based “turn-on” fluorescent Schiff base chemosensor for Al3+ ion: Synthesis, characterisation and DFT/TD-DFT studies. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.131257] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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Darroudi M, Mohammadi Ziarani G, Bahar S, Ghasemi JB, Badiei A. Lansoprazole-Based Colorimetric Chemosensor for Efficient Binding and Sensing of Carbonate Ion: Spectroscopy and DFT Studies. Front Chem 2021; 8:626472. [PMID: 33604329 PMCID: PMC7884336 DOI: 10.3389/fchem.2020.626472] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2020] [Accepted: 12/10/2020] [Indexed: 11/13/2022] Open
Abstract
The new benzimidazole based receptor Lansoprazole has been used to detect carbonate anion by naked-eye and Uv-Vis spectroscopy. This receptor revealed visual changes withCO 3 2 - anion in ethanol. No detectable color changes were observed upon the addition of any other tested anions. The lansoprazole chemosensor selectively recognizesCO 3 2 - ion over the other interference anions in the ethanol, followed by deprotonation and reflected 1:1 complex formation between the receptor and the carbonate ion. Lansoprazole exhibits splendid selectivity toward carbonate ion via a visible color change from colorless to yellow with a detection limit of 57 μM. The binding mode ofCO 3 2 - to receptor L is supported by Density Functional Theory calculation. Moreover, this receptor shows a practical visible colorimetric test strip for the detection of carbonate ions. The transition states calculation demonstrates the occurrence of reaction from L to L-CO 3 2 - after overcoming an energy barrier of 10.1 kcal/mol, and there is considerable interaction energy between L andCO 3 2 - (94.9 kJ/mol), both of which confirmed that receptor L has high sensitivity and selectivity to the carbonate ion. The theoretical studies were performed to acquire an electronic description of the complexation mechanism byCO 3 2 - as well as to study bonding and structure in the complex. The optimized structures and binding mechanisms were supported with a high correlation and agreement by spectroscopy and DFT calculations.
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Affiliation(s)
- Mahdieh Darroudi
- Department of Chemistry, Faculty of Physics and Chemistry, Alzahra University, Tehran, Iran
| | | | - Shahriyar Bahar
- Department of Chemistry, Faculty of Physics and Chemistry, Alzahra University, Tehran, Iran
| | - Jahan B. Ghasemi
- School of Chemistry, College of Science, University of Tehran, Tehran, Iran
| | - Alireza Badiei
- School of Chemistry, College of Science, University of Tehran, Tehran, Iran
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Vora M, Dey S, Kongor A, Panchal M, Panjwani F, Verma A, Jain V. An oxacalix[4]arene-derived dual-sensing fluorescent probe for the relay recognition of Hg 2+ and S 2− ions. NEW J CHEM 2021. [DOI: 10.1039/d1nj03953a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
A rhodamine B-functionalized oxacalix[4]arene architecture has been designed as a dual-responsive probe for the sequential recognition of Hg2+ and S2− ions.
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Affiliation(s)
- Manoj Vora
- Department of Chemistry, School of Sciences, Gujarat University, Navrangpura, Ahmedabad-380009, India
| | - Shuvankar Dey
- Department of Chemistry, School of Sciences, Gujarat University, Navrangpura, Ahmedabad-380009, India
| | - Anita Kongor
- Department of Chemistry, School of Sciences, Gujarat University, Navrangpura, Ahmedabad-380009, India
| | - Manthan Panchal
- Department of Chemistry, School of Sciences, Gujarat University, Navrangpura, Ahmedabad-380009, India
| | - Falak Panjwani
- Department of Chemistry, School of Sciences, Gujarat University, Navrangpura, Ahmedabad-380009, India
| | - Ashukumar Verma
- Department of Chemistry, School of Sciences, Gujarat University, Navrangpura, Ahmedabad-380009, India
| | - Vinod Jain
- Department of Chemistry, School of Sciences, Gujarat University, Navrangpura, Ahmedabad-380009, India
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