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Crans DC, Sánchez-Lombardo I, McLauchlan CC. Exploring Wells-Dawson Clusters Associated With the Small Ribosomal Subunit. Front Chem 2019; 7:462. [PMID: 31334216 PMCID: PMC6624422 DOI: 10.3389/fchem.2019.00462] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2019] [Accepted: 06/11/2019] [Indexed: 01/23/2023] Open
Abstract
The polyoxometalate P2W18O626-, the Wells-Dawson cluster, stabilized the ribosome sufficiently for the crystallographers to solve the phase problem and improve the structural resolution. In the following we characterize the interaction of the Wells-Dawson cluster with the ribosome small subunit. There are 14 different P2W18O626- clusters interacting with the ribosome, and the types of interactions range from one simple residue interaction to complex association of multiple sites including backbone interactions with a Wells-Dawson cluster. Although well-documented that bridging oxygen atoms are the main basic sites on other polyoxometalate interaction with most proteins reported, the W=O groups are the main sites of the Wells-Dawson cluster interacting with the ribosome. Furthermore, the peptide chain backbone on the ribosome host constitutes the main sites that associate with the Wells-Dawson cluster. In this work we investigate the potential of one representative pair of closely-located Wells-Dawson clusters being a genuine Double Wells-Dawson cluster. We found that the Double Wells-Dawson structure on the ribosome is geometrically sound and in line with other Double Wells-Dawson clusters previously observed in the solid state and solution. This information suggests that the Double Wells-Dawson structure on the ribosome is real and contribute to characterization of this particular structure of the ribosome.
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Affiliation(s)
- Debbie C Crans
- Department Chemistry and the Cell and Molecular Biology Program, Colorado State University, Fort Collins, CO, United States
| | - Irma Sánchez-Lombardo
- Department Chemistry and the Cell and Molecular Biology Program, Colorado State University, Fort Collins, CO, United States.,División Académica de Ciencias Básicas, Universidad Juárez Autónoma de Tabasco, Cunduacán, Mexico
| | - Craig C McLauchlan
- Department of Chemistry, Illinois State University, Normal, IL, United States
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2
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Matsuki Y, Hoshino T, Takaku S, Matsunaga S, Nomiya K. Synthesis and Molecular Structure of a Water-Soluble, Dimeric Tri-Titanium(IV)-Substituted Wells-Dawson Polyoxometalate Containing Two Bridging (C5Me5)Rh2+ Groups. Inorg Chem 2015; 54:11105-13. [PMID: 26565933 DOI: 10.1021/acs.inorgchem.5b01206] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A novel trititanium(IV)-substituted Wells-Dawson polyoxometalate (POM)-based organometallic complex, i.e., a dimeric POM containing two bridging Cp*Rh(2+) groups (Cp* = C5Me5) or [{α-P2W15Ti3O60(OH)2}2(Cp*Rh)2](16-) (D-1) with Ci symmetry, was synthesized in an analytically pure form by a 1:2 -molar ratio reaction of the organometallic precursor [Cp*RhCl2]2 with the separately prepared, monomeric trititanium(IV)-substituted Wells-Dawson POM, "[P2W15Ti3O59(OH)3](9-)" (M-1). The crystalline sample (NaK-D-1) of the water-soluble, mixed sodium/potassium salt of D-1 was obtained in the 14.7% yield, which has been characterized by complete elemental analysis, TG/DTA, FTIR, single-crystal X-ray structure analysis, and solution ((183)W, (31)P, (1)H and (13)C{(1)H}) NMR spectroscopy. Single-crystal X-ray structure analysis revealed that the two species of the protonated Wells-Dawson subunits, "[P2W15Ti3O60(OH)2](10-)" were bridged by the two Cp*Rh(2+) groups, resulting in the an overall Ci symmetry. The Cp*Rh(2+) groups were linked to the two terminal oxygen atoms of the titanium(IV) sites and one edge-sharing oxygen atom of the surface Ti-O-Ti bond. The (183)W NMR of D-1 dissolved in D2O showed that its solution structure was represented as a dimeric POM with a formula of [{α-P2W15Ti3O60(OH)3}2{Cp*Rh(OH)}2](16-) (D-2) with Ci (or S2) symmetry. A trititanium(IV)-substituted Wells-Dawson POM-supported organometallic complex has never been reported so far, and thus D-1 in the solid state and D-2 in solution are the first example of this type of complex.
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Affiliation(s)
- Yusuke Matsuki
- Department of Chemistry, Faculty of Science, Kanagawa University , Hiratsuka, Kanagawa 259-1293, Japan
| | - Takahiro Hoshino
- Department of Chemistry, Faculty of Science, Kanagawa University , Hiratsuka, Kanagawa 259-1293, Japan
| | - Shoko Takaku
- Department of Chemistry, Faculty of Science, Kanagawa University , Hiratsuka, Kanagawa 259-1293, Japan
| | - Satoshi Matsunaga
- Department of Chemistry, Faculty of Science, Kanagawa University , Hiratsuka, Kanagawa 259-1293, Japan
| | - Kenji Nomiya
- Department of Chemistry, Faculty of Science, Kanagawa University , Hiratsuka, Kanagawa 259-1293, Japan
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3
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Abramov PA, Sokolov MN, Virovets AV, Floquet S, Haouas M, Taulelle F, Cadot E, Vicent C, Fedin VP. Grafting {Cp*Rh}2+ on the surface of Nb and Ta Lindqvist-type POM. Dalton Trans 2015; 44:2234-9. [DOI: 10.1039/c4dt03339f] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Structure of a new hybrid organometallic-pom complex [trans-{Cp*Rh}2M6O19]4− (M = Nb, Ta).
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Affiliation(s)
- P. A. Abramov
- Nikolaev Institute of Inorganic Chemistry SB RAS
- Novosibirsk
- Russia
- Novosibirsk State University
- Novosibirsk
| | - M. N. Sokolov
- Nikolaev Institute of Inorganic Chemistry SB RAS
- Novosibirsk
- Russia
- Novosibirsk State University
- Novosibirsk
| | - A. V. Virovets
- Nikolaev Institute of Inorganic Chemistry SB RAS
- Novosibirsk
- Russia
| | - S. Floquet
- Lavoisier Institute of Versailles
- UMR CNRS 8180
- University of Versailles Saint-Quentin en Yvelines
- 78035 Versailles
- France
| | - M. Haouas
- Lavoisier Institute of Versailles
- UMR CNRS 8180
- University of Versailles Saint-Quentin en Yvelines
- 78035 Versailles
- France
| | - F. Taulelle
- Lavoisier Institute of Versailles
- UMR CNRS 8180
- University of Versailles Saint-Quentin en Yvelines
- 78035 Versailles
- France
| | - E. Cadot
- Lavoisier Institute of Versailles
- UMR CNRS 8180
- University of Versailles Saint-Quentin en Yvelines
- 78035 Versailles
- France
| | - C. Vicent
- Serveis Centrals d'Instrumentació Científica
- Universitat Jaume I
- 12071 Castelló
- Spain
| | - V. P. Fedin
- Nikolaev Institute of Inorganic Chemistry SB RAS
- Novosibirsk
- Russia
- Novosibirsk State University
- Novosibirsk
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4
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Abramov PA, Sokolov MN, Floquet S, Haouas M, Taulelle F, Cadot E, Peresypkina EV, Virovets AV, Vicent C, Kompankov NB, Zhdanov AA, Shuvaeva OV, Fedin VP. Coordination-Induced Condensation of [Ta6O19]8–: Synthesis and Structure of [{(C6H6)Ru}2Ta6O19]4– and [{(C6H6)RuTa6O18}2(μ-O)]10−. Inorg Chem 2014; 53:12791-8. [DOI: 10.1021/ic501622t] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- P. A. Abramov
- Nikolaev Institute of Inorganic Chemistry SB RAS, 3, Akad. Lavrentiev Avenue, Novosibirsk 630090, Russia
- Novosibirsk State University, Novosibirsk 630090, Russia
| | - M. N. Sokolov
- Nikolaev Institute of Inorganic Chemistry SB RAS, 3, Akad. Lavrentiev Avenue, Novosibirsk 630090, Russia
- Novosibirsk State University, Novosibirsk 630090, Russia
| | - S. Floquet
- Institut Lavoisier de Versailles, UMR 8180, University of Versailles Saint-Quentin en Yvelines, 45 Avenue des Etats-Unis, 78035 Versailles, France
| | - M. Haouas
- Institut Lavoisier de Versailles, UMR 8180, University of Versailles Saint-Quentin en Yvelines, 45 Avenue des Etats-Unis, 78035 Versailles, France
| | - F. Taulelle
- Institut Lavoisier de Versailles, UMR 8180, University of Versailles Saint-Quentin en Yvelines, 45 Avenue des Etats-Unis, 78035 Versailles, France
| | - E. Cadot
- Institut Lavoisier de Versailles, UMR 8180, University of Versailles Saint-Quentin en Yvelines, 45 Avenue des Etats-Unis, 78035 Versailles, France
| | - E. V. Peresypkina
- Nikolaev Institute of Inorganic Chemistry SB RAS, 3, Akad. Lavrentiev Avenue, Novosibirsk 630090, Russia
- Novosibirsk State University, Novosibirsk 630090, Russia
| | - A. V. Virovets
- Nikolaev Institute of Inorganic Chemistry SB RAS, 3, Akad. Lavrentiev Avenue, Novosibirsk 630090, Russia
- Novosibirsk State University, Novosibirsk 630090, Russia
| | - C. Vicent
- Serveis Centrals d’Instrumentació Científica, Universitat Jaume I, Av. Sos Baynat s/n, 12071 Castelló, Spain
| | - N. B. Kompankov
- Nikolaev Institute of Inorganic Chemistry SB RAS, 3, Akad. Lavrentiev Avenue, Novosibirsk 630090, Russia
| | - A. A. Zhdanov
- Nikolaev Institute of Inorganic Chemistry SB RAS, 3, Akad. Lavrentiev Avenue, Novosibirsk 630090, Russia
- Novosibirsk State University, Novosibirsk 630090, Russia
| | - O. V. Shuvaeva
- Nikolaev Institute of Inorganic Chemistry SB RAS, 3, Akad. Lavrentiev Avenue, Novosibirsk 630090, Russia
| | - V. P. Fedin
- Nikolaev Institute of Inorganic Chemistry SB RAS, 3, Akad. Lavrentiev Avenue, Novosibirsk 630090, Russia
- Novosibirsk State University, Novosibirsk 630090, Russia
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5
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Riflade B, Lachkar D, Oble J, Li J, Thorimbert S, Hasenknopf B, Lacôte E. Pd-Containing Organopolyoxometalates Derived from Dawson Polyoxometalate [P2W15V3O62]9–: Lewis Acidity and Dual Site Catalysis. Org Lett 2014; 16:3860-3. [DOI: 10.1021/ol501644c] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- Benoît Riflade
- Sorbonne Universités, UPMC Univ Paris 06, Institut Parisien de Chimie Moléculaire, 4 place Jussieu, 75005 Paris, France
| | - David Lachkar
- ICSN-CNRS,
Bâtiment
27, 1 avenue de la Terrasse, 91198 Gif-sur-Yvette Cedex, France
| | - Julie Oble
- Sorbonne Universités, UPMC Univ Paris 06, Institut Parisien de Chimie Moléculaire, 4 place Jussieu, 75005 Paris, France
- CNRS, UMR
8232,
IPCM, 4 place Jussieu, 75005 Paris, France
| | - Joaquim Li
- Sorbonne Universités, UPMC Univ Paris 06, Institut Parisien de Chimie Moléculaire, 4 place Jussieu, 75005 Paris, France
| | - Serge Thorimbert
- Sorbonne Universités, UPMC Univ Paris 06, Institut Parisien de Chimie Moléculaire, 4 place Jussieu, 75005 Paris, France
- CNRS, UMR
8232,
IPCM, 4 place Jussieu, 75005 Paris, France
| | - Bernold Hasenknopf
- Sorbonne Universités, UPMC Univ Paris 06, Institut Parisien de Chimie Moléculaire, 4 place Jussieu, 75005 Paris, France
- CNRS, UMR
8232,
IPCM, 4 place Jussieu, 75005 Paris, France
| | - Emmanuel Lacôte
- Sorbonne Universités, UPMC Univ Paris 06, Institut Parisien de Chimie Moléculaire, 4 place Jussieu, 75005 Paris, France
- ICSN-CNRS,
Bâtiment
27, 1 avenue de la Terrasse, 91198 Gif-sur-Yvette Cedex, France
- Université de Lyon, Institut de chimie de Lyon, UMR
5265 CNRS-Université Lyon I-ESCPE Lyon, 43 Bd du 11 novembre 1918, 69616 Villeurbanne, France
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6
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Allain C, Schaming D, Karakostas N, Erard M, Gisselbrecht JP, Sorgues S, Lampre I, Ruhlmann L, Hasenknopf B. Synthesis, electrochemical and photophysical properties of covalently linked porphyrin-polyoxometalates. Dalton Trans 2013; 42:2745-54. [PMID: 23232915 DOI: 10.1039/c2dt31415k] [Citation(s) in RCA: 63] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Two covalently linked porphyrin-polyoxometalate hybrids have been prepared: an Anderson-type hexamolybdate [N(C(4)H(9))(4)](3)[MnMo(6)O(18){(OCH(2))(3)CNHCO(ZnTPP)}(2)] with two pendant zinc(II)-tetraphenylporphyrins, and a Dawson-type vanadotungstate [N(C(4)H(9))(4)](5)H[P(2)V(3)W(15)O(59){(OCH(2))(3)CNHCO(ZnTPP)}] with one porphyrin. Electrochemical studies show independent redox processes for the organic and inorganic parts at usual potentials. Photophysical studies reveal an electron transfer from the excited porphyrin to the Dawson polyoxometalate, but not to the Anderson polyoxometalate. Time resolved absorption spectroscopy allows the identification of the electron transfer pathways and the determination of the time constants.
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Affiliation(s)
- Clémence Allain
- UPMC Univ. Paris 06, Institut de Chimie Moléculaire, UMR CNRS 7071, 4 place Jussieu, 75005 Paris, France
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7
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Meng RQ, Suo L, Hou GF, Liang J, Bi LH, Li HL, Wu LX. Organo-Ru supported sandwich-type tungstoarsenates: synthesis, structure and catalytic properties. CrystEngComm 2013. [DOI: 10.1039/c3ce00045a] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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8
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9
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Dolbecq A, Dumas E, Mayer CR, Mialane P. Hybrid Organic−Inorganic Polyoxometalate Compounds: From Structural Diversity to Applications. Chem Rev 2010; 110:6009-48. [PMID: 20666374 DOI: 10.1021/cr1000578] [Citation(s) in RCA: 1307] [Impact Index Per Article: 93.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Anne Dolbecq
- Institut Lavoisier de Versailles, UMR 8180, Université de Versailles Saint-Quentin en Yvelines, 45 Avenue des Etats-Unis, 78035 Versailles cedex, France
| | - Eddy Dumas
- Institut Lavoisier de Versailles, UMR 8180, Université de Versailles Saint-Quentin en Yvelines, 45 Avenue des Etats-Unis, 78035 Versailles cedex, France
| | - Cédric R. Mayer
- Institut Lavoisier de Versailles, UMR 8180, Université de Versailles Saint-Quentin en Yvelines, 45 Avenue des Etats-Unis, 78035 Versailles cedex, France
| | - Pierre Mialane
- Institut Lavoisier de Versailles, UMR 8180, Université de Versailles Saint-Quentin en Yvelines, 45 Avenue des Etats-Unis, 78035 Versailles cedex, France
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10
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Ogino I, Chen M, Dyer J, Kletnieks P, Haw J, Dixon D, Gates B. A Zeolite-Supported Molecular Ruthenium Complex with η6-C6H6 Ligands: Chemistry Elucidated by Using Spectroscopy and Density Functional Theory. Chemistry 2010; 16:7427-36. [DOI: 10.1002/chem.201000303] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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11
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Bi LH, Wang B, Hou GF, Li B, Wu LX. A novel heptatungstovanadate fragment stabilized by organo-ruthenium group: [HVW7O28Ru(dmso)3]6−. CrystEngComm 2010. [DOI: 10.1039/c0ce00087f] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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12
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Laurencin D, Thouvenot R, Boubekeur K, Villain F, Villanneau R, Rohmer MM, Bénard M, Proust A. Experimental and Computational Study of the Framework Fluxionality of Organometallic Derivatives of Polyoxometalates: Analysis of the Effect of the Metal and of the Solvent. Organometallics 2009. [DOI: 10.1021/om8011568] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Danielle Laurencin
- Institut Parisien de Chimie Moléculaire, UMR 7201, Case courrier 42, Université Pierre et Marie Curie Paris 6, 4 place Jussieu, 75252 Paris Cedex 05, France, and Institut de Chimie, UMR 7177, Université de Strasbourg, 4 rue Blaise Pascal, 67000 Strasbourg, France
| | - René Thouvenot
- Institut Parisien de Chimie Moléculaire, UMR 7201, Case courrier 42, Université Pierre et Marie Curie Paris 6, 4 place Jussieu, 75252 Paris Cedex 05, France, and Institut de Chimie, UMR 7177, Université de Strasbourg, 4 rue Blaise Pascal, 67000 Strasbourg, France
| | - Kamal Boubekeur
- Institut Parisien de Chimie Moléculaire, UMR 7201, Case courrier 42, Université Pierre et Marie Curie Paris 6, 4 place Jussieu, 75252 Paris Cedex 05, France, and Institut de Chimie, UMR 7177, Université de Strasbourg, 4 rue Blaise Pascal, 67000 Strasbourg, France
| | - Françoise Villain
- Institut Parisien de Chimie Moléculaire, UMR 7201, Case courrier 42, Université Pierre et Marie Curie Paris 6, 4 place Jussieu, 75252 Paris Cedex 05, France, and Institut de Chimie, UMR 7177, Université de Strasbourg, 4 rue Blaise Pascal, 67000 Strasbourg, France
| | - Richard Villanneau
- Institut Parisien de Chimie Moléculaire, UMR 7201, Case courrier 42, Université Pierre et Marie Curie Paris 6, 4 place Jussieu, 75252 Paris Cedex 05, France, and Institut de Chimie, UMR 7177, Université de Strasbourg, 4 rue Blaise Pascal, 67000 Strasbourg, France
| | - Marie-Madeleine Rohmer
- Institut Parisien de Chimie Moléculaire, UMR 7201, Case courrier 42, Université Pierre et Marie Curie Paris 6, 4 place Jussieu, 75252 Paris Cedex 05, France, and Institut de Chimie, UMR 7177, Université de Strasbourg, 4 rue Blaise Pascal, 67000 Strasbourg, France
| | - Marc Bénard
- Institut Parisien de Chimie Moléculaire, UMR 7201, Case courrier 42, Université Pierre et Marie Curie Paris 6, 4 place Jussieu, 75252 Paris Cedex 05, France, and Institut de Chimie, UMR 7177, Université de Strasbourg, 4 rue Blaise Pascal, 67000 Strasbourg, France
| | - Anna Proust
- Institut Parisien de Chimie Moléculaire, UMR 7201, Case courrier 42, Université Pierre et Marie Curie Paris 6, 4 place Jussieu, 75252 Paris Cedex 05, France, and Institut de Chimie, UMR 7177, Université de Strasbourg, 4 rue Blaise Pascal, 67000 Strasbourg, France
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13
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Villanneau R, Renaudineau S, Herson P, Boubekeur K, Thouvenot R, Proust A. Palladium(II) Phosphotungstate Derivatives: Synthesis and Characterization of the [Pdx{WO(H2O)}3-x{A,α-PW9O34}2](6+2x)- Anions. Eur J Inorg Chem 2009. [DOI: 10.1002/ejic.200800727] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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14
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Bi LH, Hou GF, Li B, Wu LX, Kortz U. Synthesis and crystal structure of pseudo-sandwich-type heteropolytungstates functionalized by organometallic ruthenium(ii). Dalton Trans 2009:6345-53. [DOI: 10.1039/b821750e] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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15
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Bi LH, Hou GF, Wu LX, Kortz U. An organo-ruthenium grafted zinc-substituted tungstoarsenate. CrystEngComm 2009. [DOI: 10.1039/b905030b] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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16
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Chen SW, Villanneau R, Li Y, Chamoreau LM, Boubekeur K, Thouvenot R, Gouzerh P, Proust A. Hydrothermal Synthesis and Structural Characterization of the High-Valent Ruthenium-Containing Polyoxoanion [{PW11O39}2{(HO)RuIV–O–RuIV(OH)}]10–. Eur J Inorg Chem 2008. [DOI: 10.1002/ejic.200701359] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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17
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Mixed-Valence 24-Vanadophosphate Decorated with Six RuII(dmso)3 Groups: [{RuII 3(dmso)9PVV 11VIVRuIIIO37(OH)3}2]8−. J CLUST SCI 2008. [DOI: 10.1007/s10876-007-0180-3] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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