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Heidari A, Dehghanian E, Razmara Z, Shahraki S, Samareh Delarami H, Heidari Majd M. Effect of Cu(II) compound containing dipicolinic acid on DNA damage: a study of antiproliferative activity and DNA interaction properties by spectroscopic, molecular docking and molecular dynamics approaches. J Biomol Struct Dyn 2024:1-16. [PMID: 38498382 DOI: 10.1080/07391102.2024.2329308] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2023] [Accepted: 03/06/2024] [Indexed: 03/20/2024]
Abstract
A polymeric compound formulized as [Cu(µ-dipic)2{Na2(µ-H2O)4]n.2nH2O (I), where dipic is 2,6-pyridine dicarboxylic acid (dipicolinic acid, H2dipic), was synthesized by sonochemical irradiation. The initial in-vitro cytotoxic activity of this complex compared with renowned anticancer drugs like cisplatin, versus HCT116 colon cell lines, shows promising results. This study investigated the interaction mode between compound (I) and calf-thymus DNA utilizing a range of analytical techniques including spectrophotometry, fluorimetry, partition coefficient analysis, viscometry, gel electrophoresis and molecular docking technique. The results obtained from experimental methods reveal complex (I) could bind to CT-DNA via hydrogen bonding and van der Waals forces and the theoretical methods support it. Also, complex (I) indicates nuclease activity in the attendance of H2O2 and can act as an artificial nuclease to cleave DNA with high efficiency.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Ameneh Heidari
- Department of Chemistry, Faculty of Science, University of Zabol, Zabol, Iran
| | - Effat Dehghanian
- Department of Chemistry, University of Sistan and Baluchestan, Zahedan, Iran
| | - Zohreh Razmara
- Department of Chemistry, Faculty of Science, University of Zabol, Zabol, Iran
| | - Somaye Shahraki
- Department of Chemistry, Faculty of Science, University of Zabol, Zabol, Iran
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2
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Papo TR, Jaganyi D, Mambanda A. Substitution reactions of cis-platinum(II) complexes containing bidentate N,N-donor pyridinecarboxamide ligands with different substituents. J COORD CHEM 2022. [DOI: 10.1080/00958972.2022.2149327] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Tshephiso R. Papo
- School of Chemistry and Physics, University of KwaZulu-Natal, Pietermaritzburg, South Africa
| | - Deogratius Jaganyi
- School of Pure and Applied Sciences, Mount Kenya University, Thika, Kenya
- Department of Chemistry, Faculty of Applied Sciences, Durban University of Technology, Durban, South Africa
| | - Allen Mambanda
- School of Chemistry and Physics, University of KwaZulu-Natal, Pietermaritzburg, South Africa
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3
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Heidari A, Mansouri-Torshizi H, Saeidifar M, Dehghanian E, Abdi K, Delarami HS. Diverse coordination of dipicolinic acid to Pd(II) ion result antitumor complexes, their interaction with CT-DNA by spectroscopic experiments and computational methods. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.132937] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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4
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A novel Au(III) complex with the 5,5′-dimethyl-2,2′-bipyridine ligand: Synthesis, characterization, X-ray crystal structure and biological evaluation. Polyhedron 2021. [DOI: 10.1016/j.poly.2021.115513] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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5
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Kondori T, Akbarzadeh-T N, Ghaznavi H, Karimi Z, Sheervalilou R, Dušek M, Eigner V, Shahraki O. Structure analysis and biological functionalities of a nickel(II) complex and its sonochemically synthesized nano form: in vitro anti-proliferation, DNA binding, antibacterial and molecular docking study. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.129989] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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6
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Alisufi N, Mansouri-Torshizi H. Preparation, characterization, DNA/BSA interaction and computational binding analyses of a dinuclear, biopotency Pd+2 coordinated with 1,4-phenylenediamine and ethylenediamine as ligands. JOURNAL OF THE IRANIAN CHEMICAL SOCIETY 2021. [DOI: 10.1007/s13738-020-02098-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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7
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Kiani M, Bagherzadeh M, Meghdadi S, Fadaei‐Tirani F, Schenk‐Joß K, Rabiee N. Catalytic and antibacterial properties of 3‐dentate carboxamide Pd/Pt complexes obtained via a benign route. Appl Organomet Chem 2020. [DOI: 10.1002/aoc.5531] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Mahsa Kiani
- Department of ChemistrySharif University of Technology Tehran 11155‐3516 Iran
| | - Mojtaba Bagherzadeh
- Department of ChemistrySharif University of Technology Tehran 11155‐3516 Iran
| | - Soraya Meghdadi
- Department of ChemistryIsfahan University of Technology Isfahan 84156‐83111 Iran
| | - Farzaneh Fadaei‐Tirani
- École Polytechnique Fédérale de LausanneInstitute of Chemical Sciences and Engineering CH‐1015 Lausanne Switzerland
| | - Kurt Schenk‐Joß
- Institute of Physics École Polytechnique Fédérale de Lausanne CH‐1015 Lausanne Switzerland
| | - Navid Rabiee
- Department of ChemistrySharif University of Technology Tehran 11155‐3516 Iran
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Kondori T, Shahraki O, Akbarzadeh-T N, Aramesh-Boroujeni Z. Two novel bipyridine-based cobalt (II) complexes: synthesis, characterization, molecular docking, DNA-binding and biological evaluation. J Biomol Struct Dyn 2020; 39:595-609. [DOI: 10.1080/07391102.2020.1713893] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Affiliation(s)
- Tahere Kondori
- Department of Chemistry, University of Sistan and Baluchestan, Zahedan, Iran
| | - Omolbanin Shahraki
- Pharmacology Research Center, Zahedan University of Medical Sciences, Zahedan, Iran
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Mohammadi F, Mansouri-Torshizi H. Five novel palladium(II) complexes of 8-hydroxyquinoline and amino acids with hydrophobic side chains: synthesis, characterization, cytotoxicity, DNA- and BSA-interaction studies. J Biomol Struct Dyn 2019; 38:3059-3073. [DOI: 10.1080/07391102.2019.1651219] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- Fatemeh Mohammadi
- Department of Chemistry, Faculty of Science, University of Sistan and Baluchestan, Zahedan, Iran
| | - Hassan Mansouri-Torshizi
- Department of Chemistry, Faculty of Science, University of Sistan and Baluchestan, Zahedan, Iran
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10
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Synthesis, X-ray structural analysis, antibacterial and DNA-binding studies of a lanthanum bis-(5,5′-dimethyl-2,2′-bipyridine) complex. JOURNAL OF THE IRANIAN CHEMICAL SOCIETY 2019. [DOI: 10.1007/s13738-019-01656-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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11
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Kondori T, Akbarzadeh-T N, Abdi K, Dušek M, Eigner V. A novel cadmium(II) complex of bipyridine derivative: synthesis, X-ray crystal structure, DNA-binding and antibacterial activities. J Biomol Struct Dyn 2019; 38:236-247. [DOI: 10.1080/07391102.2019.1570867] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Tahere Kondori
- Department of Chemistry, University of Sistan and Baluchestan, Zahedan, Iran
| | | | - Khatereh Abdi
- Department of Chemistry, University of Sistan and Baluchestan, Zahedan, Iran
| | - Michal Dušek
- Institute of Physics of the Czech Academy of Sciences, Prague, Czech Republic
| | - Václav Eigner
- Institute of Physics of the Czech Academy of Sciences, Prague, Czech Republic
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12
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Mansouri-Torshizi H, Zareian-Jahromi S, Abdi K, Saeidifar M. Nonionic but water soluble, [Glycine-Pd-Alanine] and [Glycine-Pd-Valine] complexes. Their synthesis, characterization, antitumor activities and rich DNA/HSA interaction studies. J Biomol Struct Dyn 2018; 37:3566-3582. [PMID: 30284510 DOI: 10.1080/07391102.2018.1520647] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Abstract
Two novel, neutral and water soluble Pd(II) complexes of formula [Pd(Gly)(Ala)] (1) and [Pd(Gly)(Val)] (2) (Gly, Ala, and Val are anionic forms of glycine, alanine, and valine amino acids, respectively) have been synthesized and characterized by FT-IR, UV-Vis, 1H-NMR, elemental analysis, and molar conductivity measurement. The data revealed that each amino acid binds to Pd(II) through the nitrogen of -NH2 and the oxygen of -COO- groups and acts as a bidentate chelate. These complexes have been assayed against leukemia cells (K562) using MTT method. The results indicated that both of the complexes display more cytotoxicity than the well-known anticancer drug, cisplatin. The interaction of the compounds with calf thymus DNA (CT-DNA) and human serum albumin (HSA) were assayed by a series of experimental techniques including electronic absorption, fluorescence, viscometry, gel electrophoresis, and FT-IR. The results indicated that the two complexes have interesting binding propensities toward CT-DNA as well as HSA and the binding affinity of (1) is more than (2). The fluorescence data indicated that both complexes strongly quench the fluorescence of ethidium bromide-DNA system as well as the intrinsic fluorescence of HSA via static quenching procedures. The thermodynamic parameters (ΔH°, ΔS°, and ΔG°) calculated from the fluorescence studies showed that hydrogen bonds and van der Waals interactions play a major role in the binding of the complexes to DNA and HSA. We suggest that both of the Pd(II) complexes exhibit the groove binding mode with CT-DNA and interact with the main binding pocket of HSA. Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Hassan Mansouri-Torshizi
- a Department of Chemistry, Faculty of Science , University of Sistan and Baluchestan , Zahedan , Iran
| | - Sareh Zareian-Jahromi
- a Department of Chemistry, Faculty of Science , University of Sistan and Baluchestan , Zahedan , Iran
| | - Khatereh Abdi
- a Department of Chemistry, Faculty of Science , University of Sistan and Baluchestan , Zahedan , Iran
| | - Maryam Saeidifar
- b Department of Nanotechnology and Advanced Materials , Materials and Energy Research Center , Karaj , Iran
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13
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Siddiqui KA. Structural Diversity of Metal-Organic Hydrates: A Crystallographic Structural Database Study. J STRUCT CHEM+ 2018. [DOI: 10.1134/s0022476618010158] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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14
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Yılmaz MK, Keleş H, İnce S, Keleş M. Iminophosphine palladium catalysts for Suzuki carbonylative coupling reaction. Appl Organomet Chem 2017. [DOI: 10.1002/aoc.4002] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Mustafa Kemal Yılmaz
- Mersin University, Faculty of Arts and SciencesDepartment of Chemistry 33343 Mersin Turkey
| | - Hülya Keleş
- Osmaniye Korkut Ata University, Faculty of Arts and SciencesDepartment of Chemistry 80000 Osmaniye Turkey
| | - Simay İnce
- Osmaniye Korkut Ata University, Faculty of Arts and SciencesDepartment of Chemistry 80000 Osmaniye Turkey
| | - Mustafa Keleş
- Osmaniye Korkut Ata University, Faculty of Arts and SciencesDepartment of Chemistry 80000 Osmaniye Turkey
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15
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Meghdadi S, Amirnasr M, Kiani M, Fadaei Tirani F, Bagheri M, Schenk KJ. Benign synthesis of quinolinecarboxamide ligands, H2bqbenzo and H2bqb and their Pd(II) complexes: X-ray crystal structure, electrochemical and antibacterial studies. J COORD CHEM 2017. [DOI: 10.1080/00958972.2017.1336231] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- Soraia Meghdadi
- Department of Chemistry, Isfahan University of Technology, Isfahan, Iran
| | - Mehdi Amirnasr
- Department of Chemistry, Isfahan University of Technology, Isfahan, Iran
| | - Mahsa Kiani
- Department of Chemistry, Isfahan University of Technology, Isfahan, Iran
| | | | - Maryam Bagheri
- Department of Chemistry, Isfahan University of Technology, Isfahan, Iran
| | - Kurt Job Schenk
- CCC–IPSB, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland
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16
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Zareian-Jahromi S, Mansouri-Torshizi H. Synthesis, characterization, DNA and HSA binding studies of isomeric Pd (II) antitumor complexes using spectrophotometry techniques. J Biomol Struct Dyn 2017; 36:1329-1350. [DOI: 10.1080/07391102.2017.1322536] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- Sareh Zareian-Jahromi
- Department of Chemistry, Faculty of Science, University of Sistan and Baluchestan, Zahedan, Iran
| | - Hassan Mansouri-Torshizi
- Department of Chemistry, Faculty of Science, University of Sistan and Baluchestan, Zahedan, Iran
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17
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MONDAL BIPLAB, SEN BUDDHADEB, SARKAR SANDIPAN, ZANGRANDO ENNIO, CHATTOPADHYAY PABITRA. Synthesis, characterization, crystal structure and DNA-binding study of four cadmium(II) pyridine-carboxamide complexes. J CHEM SCI 2017. [DOI: 10.1007/s12039-016-1215-9] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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18
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Saeidifar M, Sohrabi Jam Z, Shahraki S, Khanlarkhani A, Javaheri M, Divsalar A, Mansouri-Torshizi H, Akbar Saboury A. Multi-spectroscopic and electrochemical approaches of the interaction between a new binuclear agent and DNA. J Biomol Struct Dyn 2016; 35:2557-2564. [DOI: 10.1080/07391102.2016.1229635] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Maryam Saeidifar
- Department of Nanotechnology and Advanced Materials, Materials and Energy Research Center, Karaj, Iran
| | - Zahra Sohrabi Jam
- Department of Nanotechnology and Advanced Materials, Materials and Energy Research Center, Karaj, Iran
| | | | - Ali Khanlarkhani
- Department of Nanotechnology and Advanced Materials, Materials and Energy Research Center, Karaj, Iran
| | - Masoumeh Javaheri
- Department of Nanotechnology and Advanced Materials, Materials and Energy Research Center, Karaj, Iran
| | - Adeleh Divsalar
- Faculty of Biological Sciences, Department of Cell and Molecular Biology, Kharazmi University, Tehran, Iran
| | | | - Ali Akbar Saboury
- Institute of Biochemistry and Biophysics, University of Tehran, Tehran, Iran
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19
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Heydari A, Mansouri-Torshizi H. Design, synthesis, characterization, cytotoxicity, molecular docking and analysis of binding interactions of novel acetylacetonatopalladium(ii) alanine and valine complexes with CT-DNA and BSA. RSC Adv 2016. [DOI: 10.1039/c6ra18803f] [Citation(s) in RCA: 35] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
The neutral, water soluble palladium(ii) amino acid complexes, interact with CT-DNA (groove binding) and BSA (H-binding in main pocket). Molecular docking supports the interactions.
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Affiliation(s)
- Ali Heydari
- Department of Chemistry
- University of Sistan and Baluchestan
- Zahedan
- Iran
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20
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Mondal B, Sen B, Maji A, Zangrando E, Chattopadhyay P. Synthesis, crystal structure, redox behavior and DNA-binding properties of a series of copper(II) complexes with two new carboxamide derivatives. J COORD CHEM 2015. [DOI: 10.1080/00958972.2015.1082556] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Affiliation(s)
- Biplab Mondal
- Department of Chemistry, Burdwan University, Burdwan, India
| | - Buddhadeb Sen
- Department of Chemistry, Burdwan University, Burdwan, India
| | - Abhishek Maji
- Department of Chemistry, Burdwan University, Burdwan, India
| | - Ennio Zangrando
- Department of Chemical and Pharmaceutical Sciences, Trieste, Italy
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21
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Korkmaz F, Erdogan DA, Özalp-Yaman Ş. Interaction of a novel platinum drug with bovine serum albumin: FTIR and UV-Vis spectroscopy analysis. NEW J CHEM 2015. [DOI: 10.1039/c5nj00785b] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Platinum-Blue docks at a hydrophobic cavity at low concentrations with a binding constant comparable to that of cisplatin.
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Affiliation(s)
- Filiz Korkmaz
- Atilim University
- Faculty of Engineering
- Biophysics Laboratory
- Ankara
- Turkey
| | - Deniz Altunoz Erdogan
- Atilim University
- Faculty of Engineering
- Department of Chemical Engineering and Applied Chemistry
- Ankara
- Turkey
| | - Şeniz Özalp-Yaman
- Atilim University
- Faculty of Engineering
- Department of Chemical Engineering and Applied Chemistry
- Ankara
- Turkey
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Gholinejad M, Shahsavari HR. N, N ′-bis(2-pyridinecarboxamide)-1,2-benzene palladium complex as a new efficient catalyst for Suzuki–Miyaura coupling reaction under phosphane free conditions. Inorganica Chim Acta 2014. [DOI: 10.1016/j.ica.2014.06.039] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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23
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Mukherjee T, Mukherjee M, Sen B, Banerjee S, Hundal G, Chattopadhyay P. Synthesis, characterization, interactions with DNA and bovine serum albumin (BSA), and antibacterial activity of cyclometalated iridium(III) complexes containing dithiocarbamate derivatives. J COORD CHEM 2014. [DOI: 10.1080/00958972.2014.945924] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
| | | | - Buddhadeb Sen
- Department of Chemistry, Burdwan University, Burdwan, India
| | - Snehasis Banerjee
- Department of Chemistry, Government College of Engineering and Leather Technology, Kolkata, India
| | - Geeta Hundal
- Department of Chemistry, Guru Nanak Dev University, Amritsar, India
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Mukherjee T, Sen B, Patra A, Banerjee S, Hundal G, Chattopadhyay P. Cyclometalated rhodium(III) complexes bearing dithiocarbamate derivative: Synthesis, characterization, interaction with DNA and biological study. Polyhedron 2014. [DOI: 10.1016/j.poly.2013.11.028] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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