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Koebke KJ, Pinter TBJ, Pitts WC, Pecoraro VL. Catalysis and Electron Transfer in De Novo Designed Metalloproteins. Chem Rev 2022; 122:12046-12109. [PMID: 35763791 PMCID: PMC10735231 DOI: 10.1021/acs.chemrev.1c01025] [Citation(s) in RCA: 29] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
One of the hallmark advances in our understanding of metalloprotein function is showcased in our ability to design new, non-native, catalytically active protein scaffolds. This review highlights progress and milestone achievements in the field of de novo metalloprotein design focused on reports from the past decade with special emphasis on de novo designs couched within common subfields of bioinorganic study: heme binding proteins, monometal- and dimetal-containing catalytic sites, and metal-containing electron transfer sites. Within each subfield, we highlight several of what we have identified as significant and important contributions to either our understanding of that subfield or de novo metalloprotein design as a discipline. These reports are placed in context both historically and scientifically. General suggestions for future directions that we feel will be important to advance our understanding or accelerate discovery are discussed.
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Affiliation(s)
- Karl J. Koebke
- Department of Chemistry, University of Michigan Ann Arbor, MI 48109 USA
| | | | - Winston C. Pitts
- Department of Chemistry, University of Michigan Ann Arbor, MI 48109 USA
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2
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Analysis of Organophosphorus-Based Nerve Agent Degradation Products by Gas Chromatography-Mass Spectrometry (GC-MS): Current Derivatization Reactions in the Analytical Chemist's Toolbox. Molecules 2021; 26:molecules26154631. [PMID: 34361784 PMCID: PMC8348239 DOI: 10.3390/molecules26154631] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2021] [Revised: 07/29/2021] [Accepted: 07/29/2021] [Indexed: 11/30/2022] Open
Abstract
The field of gas chromatography-mass spectrometry (GC-MS) in the analysis of chemical warfare agents (CWAs), specifically those involving the organophosphorus-based nerve agents (OPNAs), is a continually evolving and dynamic area of research. The ever-present interest in this field within analytical chemistry is driven by the constant threat posed by these lethal CWAs, highlighted by their use during the Tokyo subway attack in 1995, their deliberate use on civilians in Syria in 2013, and their use in the poisoning of Sergei and Yulia Skripal in Great Britain in 2018 and Alexei Navalny in 2020. These events coupled with their potential for mass destruction only serve to stress the importance of developing methods for their rapid and unambiguous detection. Although the direct detection of OPNAs is possible by GC-MS, in most instances, the analytical chemist must rely on the detection of the products arising from their degradation. To this end, derivatization reactions mainly in the form of silylations and alkylations employing a vast array of reagents have played a pivotal role in the efficient detection of these products that can be used retrospectively to identify the original OPNA.
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Zhang K, Cao X, Zhang Z, Cheng Y, Zhou YH. MIL-101(Cr) with incorporated polypyridine zinc complexes for efficient degradation of a nerve agent simulant: spatial isolation of active sites promoting catalysis. Dalton Trans 2021; 50:1995-2000. [PMID: 33522548 DOI: 10.1039/d0dt04048g] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
Development of an efficient catalyst for degradation of organophosphorus toxicants is highly desirable. Herein, an MIL-101(Cr)LZn catalyst was fabricated by incorporating polypyridine zinc complexes into a MOF to achieve the spatial isolation of active sites. Compared with a terpyridine zinc complex without an MIL-101 support, this catalyst was highly active for detoxification of diethyl-4-nitrophenylphosphate.
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Affiliation(s)
- Kai Zhang
- The Key Laboratory of Functional Molecular Solids, Ministry of Education, Anhui Laboratory of Molecule-Based Materials (State Key Laboratory Cultivation Base), College of Chemistry and Materials Science Anhui Normal University, Wuhu, Anhui 241002, P.R. China.
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Mai NVN, Lim DT, Bac NQ, Chi NTH, Dung DT, Pham NN, Nhiem DN. Fe
2
O
3
/Mn
2
O
3
nanoparticles: Preparations and applications in the photocatalytic degradation of phenol and parathion in water. J CHIN CHEM SOC-TAIP 2019. [DOI: 10.1002/jccs.201900033] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Nguyen Vu Ngoc Mai
- Graduate University of Science and TechnologyVietnam Academy of Science and Technology Hanoi Vietnam
- Department of ChemistryQuy Nhon University Quy Nhon Vietnam
| | - Duong Thi Lim
- Institute of GeographyVietnam Academy of Science and Technology Hanoi Vietnam
| | - Nguyen Quang Bac
- Institute of Material ScienceVietnam Academy of Science and Technology Hanoi Vietnam
| | - Nguyen Thi Ha Chi
- Institute of Material ScienceVietnam Academy of Science and Technology Hanoi Vietnam
| | - Doan Trung Dung
- Institute of Material ScienceVietnam Academy of Science and Technology Hanoi Vietnam
| | - Ngo Nghia Pham
- Faculty of ChemistryVNU University of Science Hanoi Hanoi Vietnam
| | - Dao Ngoc Nhiem
- Graduate University of Science and TechnologyVietnam Academy of Science and Technology Hanoi Vietnam
- Institute of Material ScienceVietnam Academy of Science and Technology Hanoi Vietnam
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Chagas MA, Pereira ES, Da Silva JCS, Rocha WR. Theoretical investigation of the neutral hydrolysis of diethyl 4-nitrophenyl phosphate (paraoxon) in aqueous solution. J Mol Model 2018; 24:259. [DOI: 10.1007/s00894-018-3798-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2018] [Accepted: 08/15/2018] [Indexed: 10/28/2022]
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Chagas MA, Pereira ES, Godinho MPB, Da Silva JCS, Rocha WR. Base Mechanism to the Hydrolysis of Phosphate Triester Promoted by the Cd2+/Cd2+ Active site of Phosphotriesterase: A Computational Study. Inorg Chem 2018; 57:5888-5902. [DOI: 10.1021/acs.inorgchem.8b00361] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Marcelo A. Chagas
- LQC-MM: Laboratório de Química Computacional e Modelagem Molecular Departamento de Química, ICEx, Universidade Federal de Minas Gerais 31270-901 Pampulha, Belo Horizonte, Minas Gerais, Brazil
| | - Eufrásia S. Pereira
- LQC-MM: Laboratório de Química Computacional e Modelagem Molecular Departamento de Química, ICEx, Universidade Federal de Minas Gerais 31270-901 Pampulha, Belo Horizonte, Minas Gerais, Brazil
| | - Marina P. B. Godinho
- LQC-MM: Laboratório de Química Computacional e Modelagem Molecular Departamento de Química, ICEx, Universidade Federal de Minas Gerais 31270-901 Pampulha, Belo Horizonte, Minas Gerais, Brazil
| | - Júlio Cosme S. Da Silva
- LQC-MM: Laboratório de Química Computacional e Modelagem Molecular Departamento de Química, ICEx, Universidade Federal de Minas Gerais 31270-901 Pampulha, Belo Horizonte, Minas Gerais, Brazil
- GQC: Grupo de Química Computacional Instituto de Química e Biotecnologia, IQB, Universidade Federal de Alagoas Campus A. C. Simões, 57072-900 Maceió, Alagoas, Brazil
| | - Willian R. Rocha
- LQC-MM: Laboratório de Química Computacional e Modelagem Molecular Departamento de Química, ICEx, Universidade Federal de Minas Gerais 31270-901 Pampulha, Belo Horizonte, Minas Gerais, Brazil
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Lengyel Z, Rufo CM, Moroz YS, Makhlynets OV, Korendovych IV. Copper-Containing Catalytic Amyloids Promote Phosphoester Hydrolysis and Tandem Reactions. ACS Catal 2018; 8:59-62. [PMID: 30319881 PMCID: PMC6181230 DOI: 10.1021/acscatal.7b03323] [Citation(s) in RCA: 74] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Self-assembly of short de novo designed peptides gives rise to catalytic amyloids capable of facilitating multiple chemical transformations. We show that catalytic amyloids can efficiently hydrolyze paraoxon, a widely used, highly toxic organophosphate pesticide. Moreover, these robust and inexpensive metal-containing materials can be easily deposited on various surfaces producing catalytic flow devices. Finally, functional promiscuity of catalytic amyloids promotes tandem hydrolysis/oxidation reactions. High efficiency discovered in a very small library of peptides suggests an enormous potential for further improvement of catalytic properties both in terms of catalytic efficiency and substrate scope.
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Affiliation(s)
- Zsófia Lengyel
- Department of Chemistry, Syracuse University, 111 College Place, Syracuse, NY 13244
| | - Caroline M. Rufo
- Department of Chemistry, Syracuse University, 111 College Place, Syracuse, NY 13244
| | | | - Olga V. Makhlynets
- Department of Chemistry, Syracuse University, 111 College Place, Syracuse, NY 13244
| | - Ivan V. Korendovych
- Department of Chemistry, Syracuse University, 111 College Place, Syracuse, NY 13244
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Wilson C, Cooper NJ, Briggs ME, Cooper AI, Adams DJ. Investigating the breakdown of the nerve agent simulant methyl paraoxon and chemical warfare agents GB and VX using nitrogen containing bases. Org Biomol Chem 2018; 16:9285-9291. [DOI: 10.1039/c8ob02475h] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
A range of nitrogen containing bases was tested for the hydrolysis of a nerve agent simulant, methyl paraoxon (MP), and the chemical warfare agents, GB and VX.
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Affiliation(s)
- Craig Wilson
- Materials Innovation Factory and Department of Chemistry
- University of Liverpool
- Liverpool
- UK
| | | | - Michael E. Briggs
- Materials Innovation Factory and Department of Chemistry
- University of Liverpool
- Liverpool
- UK
| | - Andrew I. Cooper
- Materials Innovation Factory and Department of Chemistry
- University of Liverpool
- Liverpool
- UK
| | - Dave J. Adams
- School of Chemistry
- College of Science and Engineering
- University of Glasgow
- Glasgow
- UK
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Salerno A, Pitault I, Devers T, Pelletier J, Briançon S. Model-based optimization of parameters for degradation reaction of an organophosphorus pesticide, paraoxon, using CeO 2 nanoparticles in water media. ENVIRONMENTAL TOXICOLOGY AND PHARMACOLOGY 2017; 53:18-28. [PMID: 28499266 DOI: 10.1016/j.etap.2017.04.020] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2016] [Revised: 03/24/2017] [Accepted: 04/29/2017] [Indexed: 06/07/2023]
Abstract
Degradation and body surface decontamination is vital to prevent the skin penetration of paraoxon (POX), an organophosphorus pesticide, and victims poisoning. CeO2 demonstrated a good efficacy for the degradation of POX. The aim of the study was to develop a model which includes the impact of weight of CeO2, POX and diluent volumes on the degradation kinetics. The modelling was realized with rapid and simple experiments carried out in tubes, in aqueous diluent which contained ions in order to be in accordance with in vitro skin decontamination conditions. CeO2 had degraded from 5% (in case of 7.5mmol of POX per gram of CeO2) to 100% (0.002mmol of POX per gram of CeO2) of POX. Different kinetic models were tested. Using the particle aggregation kinetic model, the simulated and experimental data were in a good accordance. It highlighted the importance of particles aggregation due to salts and consistency of the mix on the degradation efficiency of CeO2. The model worked also really well to predict the degradation efficiency of CeO2 powders during in vitro skin experiments. However, it did not correctly forecast with an aqueous decontaminant, containing CeO2.
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Affiliation(s)
- Alicia Salerno
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, LAGEP UMR 5007, 43 Boulevard du 11 Novembre 1918, F-69100, Villeurbanne, France; Univ Lyon, Université Claude Bernard Lyon 1, Laboratoire de Dermopharmacie et Cosmétologie, Institut des Sciences Pharmaceutiques et Biologique, F-69373, Lyon, France
| | - Isabelle Pitault
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, LAGEP UMR 5007, 43 Boulevard du 11 Novembre 1918, F-69100, Villeurbanne, France.
| | - Thierry Devers
- Interfaces Confinement Matériaux et Nanostructures, IUT de Chartres, Université d'Orléans, F-28000, Chartres, France
| | - Jocelyne Pelletier
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, LAGEP UMR 5007, 43 Boulevard du 11 Novembre 1918, F-69100, Villeurbanne, France; Univ Lyon, Université Claude Bernard Lyon 1, Laboratoire de Dermopharmacie et Cosmétologie, Institut des Sciences Pharmaceutiques et Biologique, F-69373, Lyon, France
| | - Stéphanie Briançon
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, LAGEP UMR 5007, 43 Boulevard du 11 Novembre 1918, F-69100, Villeurbanne, France; Univ Lyon, Université Claude Bernard Lyon 1, Laboratoire de Dermopharmacie et Cosmétologie, Institut des Sciences Pharmaceutiques et Biologique, F-69373, Lyon, France
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Salerno A, Devers T, Bolzinger MA, Pelletier J, Josse D, Briançon S. In vitro skin decontamination of the organophosphorus pesticide Paraoxon with nanometric cerium oxide CeO 2. Chem Biol Interact 2017; 267:57-66. [DOI: 10.1016/j.cbi.2016.04.035] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2016] [Revised: 04/21/2016] [Accepted: 04/25/2016] [Indexed: 12/25/2022]
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Li D, Zhang Y, Song H, Lu L, Liu D, Yuan Y. Aminoalcohol-Induced Activation of Organophosphorus Hydrolase (OPH) towards Diisopropylfluorophosphate (DFP). PLoS One 2017; 12:e0169937. [PMID: 28085964 PMCID: PMC5234802 DOI: 10.1371/journal.pone.0169937] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2016] [Accepted: 12/22/2016] [Indexed: 11/19/2022] Open
Abstract
Aminoalcohols have been addressed as activating buffers for alkaline phosphatase. However, there is no record on the buffer activation regarding organophosphorus hydrolase (OPH). Here we reported the activating effects of aminoalcohols on OPH-catalyzed hydrolysis of diisopropylfluorophosphate (DFP), an analog molecule of G-type warfare agents. The kinetic parametors kcat, Vmax and kcat/Km in the OPH reaction were remarkably increased in the buffers (pH 8.0, 25°C) containing aminoalcohols with C2 between nitrogen (N) and oxygen (O) in their structures, including triethanolamine (TEA), diethanolamine, monoethanolamine, 1-amino-2-propanol, 2-amino-2-methyl-1-propanol, and triisopropanolamine. In contrast, much lower or no rate-enhancing effects were observed in the adding of amines, alcohols, amine/alcohol mixtures, or 3-amino-1-propanol (C3 between N and O). The 300 mM TEA further increased DFP-degrading activities of OPH mutants F132Y and L140Y, the previously reported OPH mutants with desirable activities towards DFP. However, the treatment of ethylenediaminetetraacetate (EDTA) markedly abolished the TEA-induced activation of OPH. The product fluoride effectively inhibited OPH-catalyzed hydrolysis of DFP by a linear mixed inhibition (inhibition constant Ki ~ 3.21 mM), which was partially released by TEA adding at initial or later reaction stage. The obtained results indicate the activation of OPH by aminoalcohol buffers could be attributed to the reduction of fluoride inhibition, which would be beneficial to the hydrolase-based detoxification of organophosphofluoridate.
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Affiliation(s)
- Dandan Li
- Hubei Key Laboratory of Genetic Regulation and Integrative Biology, School of Life Sciences, Central China Normal University, Wuhan, Hubei, P. R. China
- Department of Biochemistry, School of Basic Medical Sciences, Hubei University of Medicine, Shiyan, Hubei, P.R. China
| | - Yunze Zhang
- Hubei Key Laboratory of Genetic Regulation and Integrative Biology, School of Life Sciences, Central China Normal University, Wuhan, Hubei, P. R. China
| | - Haitao Song
- Key Laboratory of Pesticide & Chemical Biology, Ministry of Education, College of Chemistry, Central China Normal University, Wuhan, Hubei, P. R. China
| | - Liangqiu Lu
- Key Laboratory of Pesticide & Chemical Biology, Ministry of Education, College of Chemistry, Central China Normal University, Wuhan, Hubei, P. R. China
| | - Deli Liu
- Hubei Key Laboratory of Genetic Regulation and Integrative Biology, School of Life Sciences, Central China Normal University, Wuhan, Hubei, P. R. China
- * E-mail: (YY); (DL)
| | - Yongze Yuan
- Hubei Key Laboratory of Genetic Regulation and Integrative Biology, School of Life Sciences, Central China Normal University, Wuhan, Hubei, P. R. China
- * E-mail: (YY); (DL)
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