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Michalczyk M, Zierkiewicz W, Scheiner S. Wolfium bonds in homodimers of MX 4Y (M = Mo, W; X = F, Cl, Br; Y = O, S, Se). Phys Chem Chem Phys 2024; 26:5836-5847. [PMID: 38299423 DOI: 10.1039/d3cp05867k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2024]
Abstract
The term "wolfium bond" has been recently introduced to describe the noncovalent attraction between an atom of group 6 and a nucleophile via a σ-hole binding site. Crystal structures commonly contain a motif wherein two MX4Y units are arranged in close proximity, where M represents either Mo or W, and X and Y refer to halogen and chalcogen atoms respectively. DFT calculations were thus applied to a wide range of homodimers of these molecules so as to assess their preferred arrangements, and to characterize the types of bonding that are present in each in a systematic manner. The most stable Dual-X configuration is symmetric and contains a pair of equivalent M⋯X bonds. The interaction energies range from -8 to -29 kcal mol-1, and are largest for X = F, Y = O, and M = W. The X electron donor is replaced by Y, and the two wolfium bonds are reduced to one, in the less stable Mono-Y structure, with interaction energies between -2 and -10 kcal mol-1. There is some question as to whether the weaker bonds of this type constitute true wolfium bonds.
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Affiliation(s)
- Mariusz Michalczyk
- Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland.
| | - Wiktor Zierkiewicz
- Faculty of Chemistry, Wrocław University of Science and Technology, Wybrzeże Wyspiańskiego 27, 50-370 Wrocław, Poland.
| | - Steve Scheiner
- Department of Chemistry and Biochemistry, Utah State University Logan, Utah 84322-0300, USA
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2
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Mikherdov AS, Jin M, Ito H. Exploring Au(i) involving halogen bonding with N-heterocyclic carbene Au(i) aryl complexes in crystalline media. Chem Sci 2023; 14:4485-4494. [PMID: 37152261 PMCID: PMC10155931 DOI: 10.1039/d3sc00373f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2023] [Accepted: 04/07/2023] [Indexed: 05/09/2023] Open
Abstract
Among the known types of non-covalent interactions with a Au(i) metal center, Au(i) involving halogen bonding (XB) remains a rare phenomenon that has not been studied systematically. Herein, using five N-heterocyclic carbene (NHC) Au(i) aryl complexes and two iodoperfluoroarenes as XB donors, we demonstrated that the XB involving the Au(i) metal center can be predictably obtained for neutral Au(i) complexes using the example of nine co-crystals. The presence of XB involving the Au(i) center was experimentally investigated by single-crystal X-ray diffraction and solid-state 13C CP-MAS NMR methods, and their nature was elucidated through DFT calculations, followed by electron density, electrostatic potential, and orbital analyses. The obtained results revealed a connection between the structure and HOMO localization of Au(i) complexes as XB acceptors, and the geometrical, electronic, and spectroscopic features of XB interactions, as well as the supramolecular structure of the co-crystals.
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Affiliation(s)
- Alexander S Mikherdov
- Institute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University Sapporo Hokkaido 060-8628 Japan
| | - Mingoo Jin
- Institute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University Sapporo Hokkaido 060-8628 Japan
| | - Hajime Ito
- Institute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University Sapporo Hokkaido 060-8628 Japan
- Division of Applied Chemistry, Graduate School of Engineering, Hokkaido University Sapporo Hokkaido 060-8628 Japan
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Aliyarova IS, Tupikina EY, Ivanov DM, Kukushkin VY. Metal-Involving Halogen Bonding Including Gold(I) as a Nucleophilic Partner. The Case of Isomorphic Dichloroaurate(I)·Halomethane Cocrystals. Inorg Chem 2022; 61:2558-2567. [DOI: 10.1021/acs.inorgchem.1c03482] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Affiliation(s)
- Irina S. Aliyarova
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
| | - Elena Yu. Tupikina
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
| | - Daniil M. Ivanov
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
| | - Vadim Yu. Kukushkin
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg 199034, Russian Federation
- Institute of Chemistry and Pharmaceutical Technologies, Altai State University, Barnaul 656049, Russian Federation
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Priola E, Giordana A, Mazzeo PP, Mahmoudi G, Gomila RM, Zubkov FI, Pokazeev KM, Valchuk KS, Bacchi A, Zangrando E, Frontera A. On the nature of recurrent Au⋯π motifs in tris(2,2'-bipyridine)M(II) (M = Fe, Co and Ni) dicyanoaurate(I) salts: X-ray analysis and theoretical rationalization. Dalton Trans 2021; 50:16954-16960. [PMID: 34617941 DOI: 10.1039/d1dt02632a] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
This manuscript reports the synthesis, X-ray characterization and DFT study of three new [M(bipy)3]2[Au(CN)2]3(X) (M = Fe, Co, and Ni; bipy = 2,2'-bipyridine; X = anion) ionic compounds. These salts are composed of [M(bipy)3]2+ dications and [Au(CN)2]- anions in a 2 : 3 ratio. The positive charge is compensated by X = Cl- anions in compounds 1 (M = Fe) and 2 (M = Co) and X = OH- in 3 (M = Ni). The three tridentate bipyridine ligands define the coordination of the M2+ cation, resulting in a nearly octahedral coordination sphere. The linear dicyanoaurate(I) anions are completely surrounded by a cradle of aromatic rings with Au-ring centroid distances below the sum of van der Waals radii, evidencing the existence of a specific Au⋯π attraction. This interaction has been analyzed in terms of the role of the Au-atom (Lewis acid or Lewis base) using DFT calculations combined with the quantum theory of atoms in molecules (QTAIM), noncovalent interaction plot index (NCIplot) and natural bond orbital (NBO) computational tools. The NBO suggests that the Au⋯π interaction is an example of a coinage bond in spite of the anionic nature of the acceptor and the cationic nature of the donor.
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Affiliation(s)
- Emanuele Priola
- Department of Chemistry, University of Turin, Via Pietro Giuria 7, 10125 Turin, Italy
| | - Alessia Giordana
- Department of Chemistry, University of Turin, Via Pietro Giuria 7, 10125 Turin, Italy
| | - Paolo P Mazzeo
- Dipartimento di Scienze Chimiche, della Vita e della Sostenibilità Ambientale, Università di Parma, Parco Area delle Scienze 17A, 43124 Parma, Italy.,Biopharmanet-TEC, Università degli studi di Parma, via Parco Area delle Scienze 27/A, 43124 Parma, Italy
| | - Ghodrat Mahmoudi
- Department of Chemistry, Faculty of Science, University of Maragheh, P.O. Box 55181-83111, Maragheh, Iran.
| | - Rosa M Gomila
- Department of Chemistry, Universitat de les Illes Balears, Crta. de Valldemossa km 7.5, 07122 Palma de Mallorca, Baleares, Spain.
| | - Fedor I Zubkov
- Faculty of Science, Peoples' Friendship University of Russia (RUDN University), 6 Miklukho-Maklaya St., Moscow 117198, Russian Federation
| | - Kuzma M Pokazeev
- Faculty of Science, Peoples' Friendship University of Russia (RUDN University), 6 Miklukho-Maklaya St., Moscow 117198, Russian Federation
| | - Karina S Valchuk
- Faculty of Science, Peoples' Friendship University of Russia (RUDN University), 6 Miklukho-Maklaya St., Moscow 117198, Russian Federation
| | - Alessia Bacchi
- Dipartimento di Scienze Chimiche, della Vita e della Sostenibilità Ambientale, Università di Parma, Parco Area delle Scienze 17A, 43124 Parma, Italy.,Biopharmanet-TEC, Università degli studi di Parma, via Parco Area delle Scienze 27/A, 43124 Parma, Italy
| | - Ennio Zangrando
- Department of Chemical and Pharmaceutical Sciences, University of Trieste, Via L. Giorgieri 1, 34127 Trieste, Italy
| | - Antonio Frontera
- Department of Chemistry, Universitat de les Illes Balears, Crta. de Valldemossa km 7.5, 07122 Palma de Mallorca, Baleares, Spain.
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Ivanov DM, Bokach NA, Yu Kukushkin V, Frontera A. Metal Centers as Nucleophiles: Oxymoron of Halogen Bond-Involving Crystal Engineering. Chemistry 2021; 28:e202103173. [PMID: 34623005 PMCID: PMC9298210 DOI: 10.1002/chem.202103173] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2021] [Indexed: 02/06/2023]
Abstract
This review highlights recent studies discovering unconventional halogen bonding (HaB) that involves positively charged metal centers. These centers provide their filled d‐orbitals for HaB, and thus behave as nucleophilic components toward the noncovalent interaction. This role of some electron‐rich transition metal centers can be considered an oxymoron in the sense that the metal is, in most cases, formally cationic; consequently, its electron donor function is unexpected. The importance of Ha⋅⋅⋅d‐[M] (Ha=halogen; M is Group 9 (Rh, Ir), 10 (Ni, Pd, Pt), or 11 (Cu, Au)) interactions in crystal engineering is emphasized by showing remarkable examples (reported and uncovered by our processing of the Cambridge Structural Database), where this Ha⋅⋅⋅d‐[M] directional interaction guides the formation of solid supramolecular assemblies of different dimensionalities.
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Affiliation(s)
- Daniil M Ivanov
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg, 199034, Russian Federation
| | - Nadezhda A Bokach
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg, 199034, Russian Federation
| | - Vadim Yu Kukushkin
- Institute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg, 199034, Russian Federation.,Institute of Chemistry and Pharmaceutical Technologies, Altai State University, Barnaul, 656049, Russian Federation
| | - Antonio Frontera
- Department of Chemistry, Universitat de les Illes Balears, Palma de Mallorca (Baleares), 07122, Spain
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Priola E, Mahmoudi G, Andreo J, Frontera A. Unprecedented [d 9]Cu[d 10]Au coinage bonding interactions in {Cu(NH 3) 4[Au(CN) 2]} +[Au(CN) 2] - salt. Chem Commun (Camb) 2021; 57:7268-7271. [PMID: 34195712 DOI: 10.1039/d1cc02709c] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
The X-ray structure of the {Cu(NH3)4[Au(CN)2]}+[Au(CN)2]- salt is reported showing an unprecedented [d9]Cu[d10]Au coinage bond. The physical nature of the interaction has been studied using DFT calculations, including the quantum theory of atoms-in-molecules, the noncovalent interaction plot and the natural bond orbital analysis, revealing the nucleophilic role of the [d10]Au metal and the electrophilic role of [d9]Cu metal.
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Affiliation(s)
- Emanuele Priola
- Department of Chemistry, Universitá di Torino, Via Pietro Giuria 7, Torino 10125, Italy
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Gorokh ID, Adonin SA, Usoltsev AN, Novikov AS, Samsonenko DG, Zakharov SV, Sokolov MN, Fedin VP. Bromide complexes of bismuth with 4-bromobenzyl-substituted cations of pyridinium family. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2019.126955] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Extended Assemblies of Ru(bpy)(CO)2X2 (X = Cl, Br, I) Molecules Linked by 1,4-Diiodotetrafluoro-Benzene (DITFB) Halogen Bond Donors. CRYSTALS 2019. [DOI: 10.3390/cryst9060319] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The ruthenium carbonyl compounds, Ru(bpy)(CO)2X2 (X = Cl, Br or I) act as neutral halogen bond (XB) acceptors when co-crystallized with 1,4-diiodotetrafluoro-benzene (DITFB). The halogen bonding strength of the Ru-X⋅⋅⋅I halogen bonds follow the nucleophilic character of the halido ligand. The strongest halogen bond occurs between the chlorido ligand and the iodide atoms of the DITFB. All three halogen bonded complexes form polymeric assemblies in the solid state. In Ru(bpy)(CO)2Cl2⋅DITFB (1) and in Ru(bpy)(CO)2Br2⋅DITFB (2) both halido ligands are halogen bonded to only one DITFB donor. In Ru(bpy)(CO)2I2⋅DITFB (3) only one of the halido ligands is involved in halogen bonding acting as ditopic center for two DITFB donors. The polymeric structures of 1 and 2 are isomorphic wave-like single chain systems, while the iodine complexes form pairs of linear chains attached together with weak F⋅⋅⋅O≡C interactions between the closest neighbors. The stronger polarization of the iodide ligand compared to the Cl or Br ligands favors nearly linear C-I⋅⋅⋅I angles between the XB donor and the metal complex supporting the linear arrangement of the halogen bonded chain.
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Rozhkov AV, Krykova MA, Ivanov DM, Novikov AS, Sinelshchikova AA, Volostnykh MV, Konovalov MA, Grigoriev MS, Gorbunova YG, Kukushkin VY. Reverse Arene Sandwich Structures Based upon π‐Hole⋅⋅⋅[M
II
] (d
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M=Pt, Pd) Interactions, where Positively Charged Metal Centers Play the Role of a Nucleophile. Angew Chem Int Ed Engl 2019; 58:4164-4168. [DOI: 10.1002/anie.201814062] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2018] [Indexed: 12/31/2022]
Affiliation(s)
- Anton V. Rozhkov
- Institute of ChemistrySaint Petersburg State University Universitetskaya Nab. 7/9 199034 Saint Petersburg Russian Federation
| | - Mariya A. Krykova
- Institute of ChemistrySaint Petersburg State University Universitetskaya Nab. 7/9 199034 Saint Petersburg Russian Federation
| | - Daniil M. Ivanov
- Institute of ChemistrySaint Petersburg State University Universitetskaya Nab. 7/9 199034 Saint Petersburg Russian Federation
| | - Alexander S. Novikov
- Institute of ChemistrySaint Petersburg State University Universitetskaya Nab. 7/9 199034 Saint Petersburg Russian Federation
| | - Anna A. Sinelshchikova
- Frumkin Institute of Physical Chemistry and ElectrochemistryRussian Academy of Sciences Leninsky Pr. 31-4 119071 Moscow Russian Federation
| | - Marina V. Volostnykh
- Frumkin Institute of Physical Chemistry and ElectrochemistryRussian Academy of Sciences Leninsky Pr. 31-4 119071 Moscow Russian Federation
| | - Mikhail A. Konovalov
- Frumkin Institute of Physical Chemistry and ElectrochemistryRussian Academy of Sciences Leninsky Pr. 31-4 119071 Moscow Russian Federation
| | - Mikhail S. Grigoriev
- Frumkin Institute of Physical Chemistry and ElectrochemistryRussian Academy of Sciences Leninsky Pr. 31-4 119071 Moscow Russian Federation
| | - Yulia G. Gorbunova
- Frumkin Institute of Physical Chemistry and ElectrochemistryRussian Academy of Sciences Leninsky Pr. 31-4 119071 Moscow Russian Federation
| | - Vadim Yu. Kukushkin
- Institute of ChemistrySaint Petersburg State University Universitetskaya Nab. 7/9 199034 Saint Petersburg Russian Federation
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Rozhkov AV, Krykova MA, Ivanov DM, Novikov AS, Sinelshchikova AA, Volostnykh MV, Konovalov MA, Grigoriev MS, Gorbunova YG, Kukushkin VY. Reverse Arene Sandwich Structures Based upon π‐Hole⋅⋅⋅[M
II
] (d
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M=Pt, Pd) Interactions, where Positively Charged Metal Centers Play the Role of a Nucleophile. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201814062] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Anton V. Rozhkov
- Institute of ChemistrySaint Petersburg State University Universitetskaya Nab. 7/9 199034 Saint Petersburg Russian Federation
| | - Mariya A. Krykova
- Institute of ChemistrySaint Petersburg State University Universitetskaya Nab. 7/9 199034 Saint Petersburg Russian Federation
| | - Daniil M. Ivanov
- Institute of ChemistrySaint Petersburg State University Universitetskaya Nab. 7/9 199034 Saint Petersburg Russian Federation
| | - Alexander S. Novikov
- Institute of ChemistrySaint Petersburg State University Universitetskaya Nab. 7/9 199034 Saint Petersburg Russian Federation
| | - Anna A. Sinelshchikova
- Frumkin Institute of Physical Chemistry and ElectrochemistryRussian Academy of Sciences Leninsky Pr. 31-4 119071 Moscow Russian Federation
| | - Marina V. Volostnykh
- Frumkin Institute of Physical Chemistry and ElectrochemistryRussian Academy of Sciences Leninsky Pr. 31-4 119071 Moscow Russian Federation
| | - Mikhail A. Konovalov
- Frumkin Institute of Physical Chemistry and ElectrochemistryRussian Academy of Sciences Leninsky Pr. 31-4 119071 Moscow Russian Federation
| | - Mikhail S. Grigoriev
- Frumkin Institute of Physical Chemistry and ElectrochemistryRussian Academy of Sciences Leninsky Pr. 31-4 119071 Moscow Russian Federation
| | - Yulia G. Gorbunova
- Frumkin Institute of Physical Chemistry and ElectrochemistryRussian Academy of Sciences Leninsky Pr. 31-4 119071 Moscow Russian Federation
| | - Vadim Yu. Kukushkin
- Institute of ChemistrySaint Petersburg State University Universitetskaya Nab. 7/9 199034 Saint Petersburg Russian Federation
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Adonin SA, Bondarenko MA, Novikov AS, Abramov PA, Plyusnin PE, Sokolov MN, Fedin VP. Halogen bonding-assisted assembly of bromoantimonate(v) and polybromide-bromoantimonate-based frameworks. CrystEngComm 2019. [DOI: 10.1039/c8ce01944d] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Halogen bonding within bromo- and polybromoantimonates(v).
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Affiliation(s)
- Sergey A. Adonin
- Nikolaev Institute of Inorganic Chemistry SB RAS
- Novosibirsk
- Russia
- Novosibirsk State University
- Novosibirsk
| | | | | | - Pavel A. Abramov
- Nikolaev Institute of Inorganic Chemistry SB RAS
- Novosibirsk
- Russia
- Novosibirsk State University
- Novosibirsk
| | - Pavel E. Plyusnin
- Nikolaev Institute of Inorganic Chemistry SB RAS
- Novosibirsk
- Russia
- Novosibirsk State University
- Novosibirsk
| | - Maxim N. Sokolov
- Nikolaev Institute of Inorganic Chemistry SB RAS
- Novosibirsk
- Russia
- Novosibirsk State University
- Novosibirsk
| | - Vladimir P. Fedin
- Nikolaev Institute of Inorganic Chemistry SB RAS
- Novosibirsk
- Russia
- Novosibirsk State University
- Novosibirsk
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