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Szymczak I, Pietrzyk-Brzezińska AJ, Duszyński K, Ryngajłło M. Characterization of the Putative Acylated Cellulose Synthase Operon in Komagataeibacter xylinus E25. Int J Mol Sci 2022; 23:ijms23147851. [PMID: 35887199 PMCID: PMC9318390 DOI: 10.3390/ijms23147851] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Revised: 07/12/2022] [Accepted: 07/13/2022] [Indexed: 11/16/2022] Open
Abstract
Bacterial cellulose is a natural polymer with an expanding array of applications. Because of this, the main cellulose producers of the Komagataeibacter genus have been extensively studied with the aim to increase its synthesis or to customize its physicochemical features. Up to now, the genetic studies in Komagataeibacter have focused on the first cellulose synthase operon (bcsI) encoding the main enzyme complex. However, the role of other accessory cellulose operons has been understudied. Here we aimed to fill this gap by performing a detailed analysis of the second cellulose synthase operon (bcsII), which is putatively linked with cellulose acylation. In this study we harnessed the genome sequence, gene expression and protein structure information of K. xylinus E25 and other Komagataeibacter species to discuss the probable features of bcsII and the biochemical function of its main protein products. The results of our study support the previous hypothesis that bcsII is involved in the synthesis of the acylated polymer and expand it by presenting the evidence that it may also function in the regulation of its attachment to the cell surface and to the crystalline cellulose fibers.
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Abstract
Lectins are widely distributed proteins having ability of binding selectively and reversibly with carbohydrates moieties and glycoconjugates. Although lectins have been reported from different biological sources, the legume lectins are the best-characterized family of plant lectins. Legume lectins are a large family of homologous proteins with considerable similarity in amino acid sequence and their tertiary structures. Despite having strong sequence conservation, these lectins show remarkable variability in carbohydrate specificity and quaternary structures. The ability of legume lectins in recognizing glycans and glycoconjugates on cells and other intracellular structures make them a valuable research tool in glycomic research. Due to variability in binding with glycans, glycoconjugates and multiple biological functions, legume lectins are the subject of intense research for their diverse application in different fields such as glycobiology, biomedical research and crop improvement. The present review specially focuses on structural and functional characteristics of legume lectins along with their potential areas of application.
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Affiliation(s)
- Rajan Katoch
- Biochemistry Laboratory, Department of Genetics and Plant Breeding, CSKHPKV, Palampur, 176 062 India
| | - Ankur Tripathi
- Biochemistry Laboratory, Department of Genetics and Plant Breeding, CSKHPKV, Palampur, 176 062 India
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Sukumaran S, M. H, C. S. Quercetin binding to Spatholobus parviflorus lectin: Promise of a macromolecular, specific-compound carrier for drug. Int J Biol Macromol 2019; 133:214-225. [DOI: 10.1016/j.ijbiomac.2019.04.100] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2019] [Revised: 04/12/2019] [Accepted: 04/12/2019] [Indexed: 11/30/2022]
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Nguyen CT, Tanaka K, Cao Y, Cho SH, Xu D, Stacey G. Computational Analysis of the Ligand Binding Site of the Extracellular ATP Receptor, DORN1. PLoS One 2016; 11:e0161894. [PMID: 27583834 PMCID: PMC5008829 DOI: 10.1371/journal.pone.0161894] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2016] [Accepted: 08/12/2016] [Indexed: 12/29/2022] Open
Abstract
DORN1 (also known as P2K1) is a plant receptor for extracellular ATP, which belongs to a large gene family of legume-type (L-type) lectin receptor kinases. Extracellular ATP binds to DORN1 with strong affinity through its lectin domain, and the binding triggers a variety of intracellular activities in response to biotic and abiotic stresses. However, information on the tertiary structure of the ligand binding site of DORN1is lacking, which hampers efforts to fully elucidate the mechanism of receptor action. Available data of the crystal structures from more than 50 L-type lectins enable us to perform an in silico study of molecular interaction between DORN1 and ATP. In this study, we employed a computational approach to develop a tertiary structure model of the DORN1 lectin domain. A blind docking analysis demonstrated that ATP binds to a cavity made by four loops (defined as loops A B, C and D) of the DORN1 lectin domain with high affinity. In silico target docking of ATP to the DORN1 binding site predicted interaction with 12 residues, located on the four loops, via hydrogen bonds and hydrophobic interactions. The ATP binding pocket is structurally similar in location to the carbohydrate binding pocket of the canonical L-type lectins. However, four of the residues predicted to interact with ATP are not conserved between DORN1 and the other carbohydrate-binding lectins, suggesting that diversifying selection acting on these key residues may have led to the ATP binding activity of DORN1. The in silico model was validated by in vitro ATP binding assays using the purified extracellular lectin domain of wild-type DORN1, as well as mutated DORN1 lacking key ATP binding residues.
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Affiliation(s)
- Cuong The Nguyen
- Division of Plant Sciences and Biochemistry, Christopher S. Bond Life Sciences Center, University of Missouri Columbia, Missouri, 65211, United States of America
| | - Kiwamu Tanaka
- Department of Plant Pathology, Washington State University, Pullman, Washington, 646430, United States of America
| | - Yangrong Cao
- Division of Plant Sciences and Biochemistry, Christopher S. Bond Life Sciences Center, University of Missouri Columbia, Missouri, 65211, United States of America
| | - Sung-Hwan Cho
- Division of Plant Sciences and Biochemistry, Christopher S. Bond Life Sciences Center, University of Missouri Columbia, Missouri, 65211, United States of America
| | - Dong Xu
- Department of Computer Science, Informatics Institute, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri, 65211, United States of America
| | - Gary Stacey
- Division of Plant Sciences and Biochemistry, Christopher S. Bond Life Sciences Center, University of Missouri Columbia, Missouri, 65211, United States of America
- * E-mail:
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Surya S, Geethanandan K, Sadasivan C, Haridas M. Gallic acid binding to Spatholobus parviflorus lectin provides insight to its quaternary structure forming. Int J Biol Macromol 2016; 91:696-702. [PMID: 27283232 DOI: 10.1016/j.ijbiomac.2016.06.010] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2016] [Revised: 06/02/2016] [Accepted: 06/05/2016] [Indexed: 11/25/2022]
Abstract
Therapeutic effects of gallic acid (GA) have already been extensively studied. However, its interaction with lectins has not gained much attention. It is of interest to validate the binding profile of GA with Spatholobus parviflorus seed lectin. A combination of Isothermal Titration Calorimetry (ITC), haemagglutination assay and molecular docking was applied on SPL-GA interaction. ITC results showed four binding sites, stoichiometry, n=4, irrespective of the ratio of SPL:GA taken for titration. Difference among the four binding sites of a single molecule of SPL with regard to GA binding kinetic parameters was consistently varying. Similarly, the glide scores obtained for GA in the four different binding clefts of SPL were also conformed to the ITC. The binding of GA on SPL without affecting its sugar binding property could be considered as a boon for glycobiological research. From the presented studies, it could be proposed that the SPL-GA interactions may facilitate drug delivery by specific targeting/attachment by profiling of cell-surface glycans, followed by controlled release of drugs.
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Affiliation(s)
- Sukumaran Surya
- Inter University Centre for Bioscience and Department of Biotechnology and Microbiology, Kannur University, Thalassery Campus, Kannur 670661, India
| | - Krishnan Geethanandan
- Inter University Centre for Bioscience and Department of Biotechnology and Microbiology, Kannur University, Thalassery Campus, Kannur 670661, India
| | - Chittalakkottu Sadasivan
- Inter University Centre for Bioscience and Department of Biotechnology and Microbiology, Kannur University, Thalassery Campus, Kannur 670661, India
| | - Madhathilkovilakathu Haridas
- Inter University Centre for Bioscience and Department of Biotechnology and Microbiology, Kannur University, Thalassery Campus, Kannur 670661, India.
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Surya S, Abhilash J, Geethanandan K, Sadasivan C, Haridas M. A profile of protein-protein interaction: Crystal structure of a lectin-lectin complex. Int J Biol Macromol 2016; 87:529-36. [DOI: 10.1016/j.ijbiomac.2016.02.081] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2016] [Revised: 02/29/2016] [Accepted: 02/29/2016] [Indexed: 10/22/2022]
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Abhilash J, Geethanandan K, Bharath S, Sabu A, Sadasivan C, Haridas M. The crystal structure of a lectin from Butea monosperma: Insight into its glycosylation and binding of ligands. Int J Biol Macromol 2015; 72:1376-83. [DOI: 10.1016/j.ijbiomac.2014.10.004] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2014] [Revised: 09/30/2014] [Accepted: 10/01/2014] [Indexed: 10/24/2022]
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Pattern Recognition in Legume Lectins to Extrapolate Amino Acid Variability to Sugar Specificity. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2014. [DOI: 10.1007/978-3-319-11280-0_13] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register]
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Tintu I, Abhilash J, Dileep KV, Augustine A, Haridas M, Sadasivan C. A lectin from Spatholobus parviflorus inhibits Aspergillus flavus α-amylase: enzyme kinetics and thermodynamic studies. Chem Biol Drug Des 2014; 84:116-22. [PMID: 24460654 DOI: 10.1111/cbdd.12291] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2013] [Revised: 10/30/2013] [Accepted: 01/19/2014] [Indexed: 11/27/2022]
Abstract
Aspergillus flavus is a commonly found fungal pathogen which produces structurally related and highly toxic secondary metabolites, aflatoxins. It has been proposed that α-amylase inhibitors may limit the ability of the fungus to produce aflatoxins. Hence, this enzyme is a potent target for the development of antifungal agents. In this study, it was found that Spatholobus parviflorus seed lectin (SPL) can inhibit the growth of A. flavus with a MIC value of 1.5 mg/mL. The enzyme kinetics, molecular modeling and isothermal titration calorimetric studies suggest that SPL can inhibit α-amylase with Ki value of 0.0042 mm. Hence, it is suggested that the antifungal activity of SPL might be partly due to its ability to inhibit the enzyme α-amylase.
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Affiliation(s)
- Ignatius Tintu
- Department of Biotechnology & Microbiology, Inter-University Centre for Bioscience, Kannur University, Thalassery Campus, Palayad, 670661, India
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Armijo G, Salinas P, Monteoliva MI, Seguel A, García C, Villarroel-Candia E, Song W, van der Krol AR, Álvarez ME, Holuigue L. A salicylic acid-induced lectin-like protein plays a positive role in the effector-triggered immunity response of Arabidopsis thaliana to Pseudomonas syringae Avr-Rpm1. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2013; 26:1395-406. [PMID: 24006883 DOI: 10.1094/mpmi-02-13-0044-r] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Salicylic acid (SA) is one of the key hormones that orchestrate the pathogen-induced immune response in plants. This response is often characterized by the activation of a local hypersensitive reaction involving programmed cell death, which constrains proliferation of biotrophic pathogens. Here, we report the identification and functional characterization of an SA-induced legume lectin-like protein 1 (SAI-LLP1), which is coded by a gene that belongs to the group of early SA-activated Arabidopsis genes. SAI-LLP1 expression is induced upon inoculation with avirulent strains of Pseudomonas syringae pv. tomato via an SA-dependent mechanism. Constitutive expression of SAI-LLP1 restrains proliferation of P. syringae pv. tomato Avr-Rpm1 and triggers more cell death in inoculated leaves. Cellular and biochemical evidence indicates that SAI-LLP1 is a glycoprotein located primarily at the apoplastic side of the plasma membrane. This work indicates that SAI-LLP1 is involved in resistance to P. syringae pv. tomato Avr-Rpm1 in Arabidopsis, as a component of the SA-mediated defense processes associated with the effector-triggered immunity response.
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Carbohydrate Binding and Unfolding of Spatholobus parviflorus Lectin: Fluorescence and Circular Dichroism Spectroscopic Study. Appl Biochem Biotechnol 2013; 171:80-92. [DOI: 10.1007/s12010-013-0340-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2013] [Accepted: 06/17/2013] [Indexed: 02/02/2023]
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Abhilash J, Dileep KV, Palanimuthu M, Geethanandan K, Sadasivan C, Haridas M. Metal ions in sugar binding, sugar specificity and structural stability of Spatholobus parviflorus seed lectin. J Mol Model 2013; 19:3271-8. [DOI: 10.1007/s00894-013-1854-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2012] [Accepted: 04/16/2013] [Indexed: 12/12/2022]
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