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Zhou H, Cai Y, Long M, Zheng N, Zhang Z, You C, Hussain A, Xia X. Computer-Aided Reconstruction and Application of Bacillus halodurans S7 Xylanase with Heat and Alkali Resistance. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2024; 72:1213-1227. [PMID: 38183306 DOI: 10.1021/acs.jafc.3c08221] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/08/2024]
Abstract
β-1,4-Endoxylanase is the most critical hydrolase for xylan degradation during lignocellulosic biomass utilization. However, its poor stability and activity in hot and alkaline environments hinder its widespread application. In this study, BhS7Xyl from Bacillus halodurans S7 was improved using a computer-aided design through isothermal compressibility (βT) perturbation engineering and by combining three thermostability prediction algorithms (ICPE-TPA). The best variant with remarkable improvement in specific activity, heat resistance (70 °C), and alkaline resistance (both pH 9.0 and 70 °C), R69F/E137M/E145L, exhibited a 4.9-fold increase by wild-type in specific activity (1368.6 U/mg), a 39.4-fold increase in temperature half-life (458.1 min), and a 57.6-fold increase in pH half-life (383.1 min). Furthermore, R69F/E137M/E145L was applied to the hydrolysis of agricultural waste (corncob and hardwood pulp) to efficiently obtain a higher yield of high-value xylooligosaccharides. Overall, the ICPE-TPA strategy has the potential to improve the functional performance of enzymes under extreme conditions for the high-value utilization of lignocellulosic biomass.
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Affiliation(s)
- Huimin Zhou
- Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi 214122, Jiangsu, China
| | - Yongchao Cai
- Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi 214122, Jiangsu, China
| | - Mengfei Long
- Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi 214122, Jiangsu, China
| | - Nan Zheng
- Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi 214122, Jiangsu, China
| | - Zehua Zhang
- Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi 214122, Jiangsu, China
| | - Cuiping You
- Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi 214122, Jiangsu, China
| | - Asif Hussain
- Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi 214122, Jiangsu, China
| | - Xiaole Xia
- Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi 214122, Jiangsu, China
- College of Food Science and Engineering, Tianjin University of Science & Technology, Tianjin 300000, China
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Kumari K, Nagar S, Goyal S, Maan S, Sindhu M, Singh R, Kumar V. Production, Characterization and Prebiotic Potential of Xylooligosaccharides Produced from Wheat Bran using Enterobacter hormaechei KS1 Xylanase. Indian J Microbiol 2023; 63:352-360. [PMID: 37781003 PMCID: PMC10533776 DOI: 10.1007/s12088-023-01097-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Accepted: 08/18/2023] [Indexed: 10/03/2023] Open
Abstract
In the present investigation, xylooligosaccharides were produced from wheat bran and wheat bran extracted xylan through enzymatic hydrolysis using xylanase from novel Enterobacter hormaechei KS1. Xylooligosaccharides/reducing sugars production from wheat bran was found maximum (374 mg/g) when 4.0% of wheat bran was treated with 375 units (IU/mL) of Enterobacter hormaechei KS1 xylanase at pH 6.0 and incubated at 50 °C for 24 h of incubation. In case of wheat bran extracted xylan 419 mg/g of xylooligosaccharides were produced when 3% of extracted xylan was incubate for 8 h. Analysis of the enzymatic hydrolysate through high performance liquid chromatography equipped with refractive index detector showed the presence of xylose, xylopentose and xylohexose. The decrease in pH with 1.0% dose of xylooligosacchaides produced from extracted xylan hydrolysis using E. hormaechei KS1 xylanase showed more decrease with L. rhamnosus (6.72 to 5.94) followed by L. brevis (6.71 to 6.15) and L. plantarum (6.71 to 6.41). In case of increase in optical density both wheat bran and wheat bran extracted xylan generated xylooligosaccharides exhibited similar pattern i.e., L. rhamnosus > L. plantarum > L. brevis.
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Affiliation(s)
- Kajal Kumari
- Department of Biochemistry, College of Basic Sciences and Humanities, CCS Haryana Agricultural University, Hisar, Haryana 125004 India
| | - Sushil Nagar
- Department of Biochemistry, College of Basic Sciences and Humanities, CCS Haryana Agricultural University, Hisar, Haryana 125004 India
| | - Sakshi Goyal
- Department of Biochemistry, College of Basic Sciences and Humanities, CCS Haryana Agricultural University, Hisar, Haryana 125004 India
| | - Sonu Maan
- Department of Biochemistry, College of Basic Sciences and Humanities, CCS Haryana Agricultural University, Hisar, Haryana 125004 India
| | - Meena Sindhu
- Department of Microbiology, College of Basic Sciences and Humanities, CCS Haryana Agricultural University, Hisar, Haryana 125004 India
| | - Renu Singh
- Department of Biosciences, SJJT University, Jhunjhunu, Rajasthan 333001 India
| | - Vinod Kumar
- Department of Biochemistry, College of Basic Sciences and Humanities, CCS Haryana Agricultural University, Hisar, Haryana 125004 India
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Olaniyi OO, Damilare AO, Lawal OT, Igbe FO. Properties of a neutral, thermally stable and surfactant-tolerant pullulanase from worker termite gut-dwelling Bacillus safensis as potential for industrial applications. Heliyon 2022; 8:e10617. [PMID: 36158107 PMCID: PMC9489966 DOI: 10.1016/j.heliyon.2022.e10617] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2021] [Revised: 02/03/2022] [Accepted: 09/07/2022] [Indexed: 11/19/2022] Open
Abstract
The gut of termite has been observed to host communities of bacteria which exhibited pullulan-degrading ability. Bacillus safensis displayed maximum pullulanase (a debranching enzyme) activity and it was therefore selected for production, purification and characterization of pullulanase which was the aim of the study. The crude enzyme obtained from the pullulanase production medium was subjected to ammonium sulphate precipitation, ion exchange and gel-filtration chromatography and the physicochemical properties of the purified was thereafter characterized. A purified pullulanase with the yield of 13% and 24-fold purification was obtained and its homogeneity was established by molecular weight of 42 kDa. The optimum pH 7 and 60 °C were obtained while the enzyme was stable between 40-60 °C and pH 4–5 and 7–8 respectively with significant amount of residual activities recorded. The purified pullulanase was stimulated in the presence of Ca2+, urea and SDS while Al3+, Fe2+, Co2+, Cu2+, Mg2+ and chelating agent, EDTA mildly inhibited the activity of the enzyme in a concentration-dependent manner. The Km and Vmax were found to be 0.324 μmol/ml/min and 6.85 mg/ml respectively. The exceptional physicochemical properties of B. safensis pullulanase could find application in several industrial processes.
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Affiliation(s)
| | | | - Olusola Tosin Lawal
- Department of Biochemistry, Federal University of Technology, PMB 704, Akure, Nigeria
| | - Festus Omotere Igbe
- Department of Biochemistry, Federal University of Technology, PMB 704, Akure, Nigeria
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Safara S, Harighi B, Bahramnejad B, Ahmadi S. Antibacterial Activity of Endophytic Bacteria Against Sugar Beet Root Rot Agent by Volatile Organic Compound Production and Induction of Systemic Resistance. Front Microbiol 2022; 13:921762. [PMID: 35722285 PMCID: PMC9201493 DOI: 10.3389/fmicb.2022.921762] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2022] [Accepted: 05/09/2022] [Indexed: 11/13/2022] Open
Abstract
The volatile organic compounds (VOCs) produced by endophytic bacteria have a significant role in the control of phytopathogens. In this research, the VOCs produced by the endophytic bacteria Streptomyces sp. B86, Pantoea sp. Dez632, Pseudomonas sp. Bt851, and Stenotrophomonas sp. Sh622 isolated from healthy sugar beet (Beta vulgaris) and sea beet (Beta maritima) were evaluated for their effects on the virulence traits of Bacillus pumilus Isf19, the causal agent of harvested sugar beet root rot disease. The gas chromatographymass spectrometry (GC-MS) analysis revealed that B86, Dez632, Bt851, and Sh622 produced 15, 28, 30, and 20 VOCs, respectively, with high quality. All antagonistic endophytic bacteria produced VOCs that significantly reduced soft root symptoms and inhibited the growth of B. pumilus Isf19 at different levels. The VOCs produced by endophytic bacteria significantly reduced swarming, swimming, and twitching motility by B. pumilus Isf19, which are important to pathogenicity. Our results revealed that VOCs produced by Sh622 and Bt851 significantly reduced attachment of B. pumilus Isf19 cells to sugar beetroots, and also all endophytic bacteria tested significantly reduced chemotaxis motility of the pathogen toward root extract. The VOCs produced by Dez632 and Bt851 significantly upregulated the expression levels of defense genes related to soft rot resistance. Induction of PR1 and NBS-LRR2 genes in sugar beetroot slices suggests the involvement of SA and JA pathways, respectively, in the induction of resistance against pathogen attack. Based on our results, the antibacterial VOCs produced by endophytic bacteria investigated in this study can reduce soft rot incidence.
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Affiliation(s)
- Somayeh Safara
- Department of Plant Protection, Faculty of Agriculture, University of Kurdistan, Sanandaj, Iran
| | - Behrouz Harighi
- Department of Plant Protection, Faculty of Agriculture, University of Kurdistan, Sanandaj, Iran
| | - Bahman Bahramnejad
- Department of Plant Production and Genetics, Faculty of Agriculture, University of Kurdistan, Sanandaj, Iran
| | - Slahadin Ahmadi
- Department of Medical Physiology and Pharmacology, School of Medicine, Kurdistan University of Medical Sciences, Sanandaj, Iran
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Zuo K, Li H, Chen J, Ran Q, Huang M, Cui X, He L, Liu J, Jiang Z. Effective Biotransformation of Variety of Guaiacyl Lignin Monomers Into Vanillin by Bacillus pumilus. Front Microbiol 2022; 13:901690. [PMID: 35633711 PMCID: PMC9130762 DOI: 10.3389/fmicb.2022.901690] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2022] [Accepted: 04/13/2022] [Indexed: 11/13/2022] Open
Abstract
Biotransformation has gained increasing attention due to its being an eco-friendly way for the production of value-added chemicals. The present study aimed to assess the potential of Bacillus pumilus ZB1 on guaiacyl lignin monomers biotransformation for the production of vanillin. Consequently, isoeugenol, eugenol, and vanillyl alcohol could be transformed into vanillin by B. pumilus ZB1. Based on the structural alteration of masson pine and the increase of total phenol content in the supernatant, B. pumilus ZB1 exhibited potential in lignin depolymerization and valorization using masson pine as the substrate. As the precursors of vanillin, 61.1% of isoeugenol and eugenol in pyrolyzed bio-oil derived from masson pine could be transformed into vanillin by B. pumilus ZB1. Four monooxygenases with high specific activity were identified that were involved in the transformation process. Thus, B. pumilus ZB1 could emerge as a candidate in the biosynthesis of vanillin by using wide guaiacyl precursors as the substrates.
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Affiliation(s)
- Kangjia Zuo
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Hubei University, Wuhan, China
- Hubei Key Laboratory of Industrial Biotechnology, School of Life Sciences, Hubei University, Wuhan, China
| | - Huanan Li
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Hubei University, Wuhan, China
- Hubei Key Laboratory of Industrial Biotechnology, School of Life Sciences, Hubei University, Wuhan, China
| | - Jianhui Chen
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Hubei University, Wuhan, China
- Hubei Key Laboratory of Industrial Biotechnology, School of Life Sciences, Hubei University, Wuhan, China
| | - Qiuping Ran
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Hubei University, Wuhan, China
- Hubei Key Laboratory of Industrial Biotechnology, School of Life Sciences, Hubei University, Wuhan, China
| | - Mengtian Huang
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Hubei University, Wuhan, China
- Hubei Key Laboratory of Industrial Biotechnology, School of Life Sciences, Hubei University, Wuhan, China
| | - Xinxin Cui
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Hubei University, Wuhan, China
- Hubei Key Laboratory of Industrial Biotechnology, School of Life Sciences, Hubei University, Wuhan, China
| | - Lili He
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Hubei University, Wuhan, China
- Hubei Key Laboratory of Industrial Biotechnology, School of Life Sciences, Hubei University, Wuhan, China
| | - Jiashu Liu
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Hubei University, Wuhan, China
- Hubei Key Laboratory of Industrial Biotechnology, School of Life Sciences, Hubei University, Wuhan, China
| | - Zhengbing Jiang
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Hubei University, Wuhan, China
- Hubei Key Laboratory of Industrial Biotechnology, School of Life Sciences, Hubei University, Wuhan, China
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Verma D. Extremophilic Prokaryotic Endoxylanases: Diversity, Applicability, and Molecular Insights. Front Microbiol 2021; 12:728475. [PMID: 34566933 PMCID: PMC8458939 DOI: 10.3389/fmicb.2021.728475] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2021] [Accepted: 08/06/2021] [Indexed: 11/13/2022] Open
Abstract
Extremophilic endoxylanases grabbed attention in recent years due to their applicability under harsh conditions of several industrial processes. Thermophilic, alkaliphilic, and acidophilic endoxylanases found their employability in bio-bleaching of paper pulp, bioconversion of lignocellulosic biomass into xylooligosaccharides, bioethanol production, and improving the nutritious value of bread and other bakery products. Xylanases obtained from extremophilic bacteria and archaea are considered better than fungal sources for several reasons. For example, enzymatic activity under broad pH and temperature range, low molecular weight, cellulase-free activity, and longer stability under extreme conditions of prokaryotic derived xylanases make them a good choice. In addition, a short life span, easy cultivation/harvesting methods, higher yield, and rapid DNA manipulations of bacterial and archaeal cells further reduces the overall cost of the product. This review focuses on the diversity of prokaryotic endoxylanases, their characteristics, and their functional attributes. Besides, the molecular mechanisms of their extreme behavior have also been presented here.
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Affiliation(s)
- Digvijay Verma
- Department of Environmental Microbiology, Babasaheb Bhimrao Ambedkar University, Lucknow, India
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7
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Paecilomyces variotii xylanase production, purification and characterization with antioxidant xylo-oligosaccharides production. Sci Rep 2021; 11:16468. [PMID: 34389757 PMCID: PMC8363652 DOI: 10.1038/s41598-021-95965-w] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2021] [Accepted: 07/22/2021] [Indexed: 02/07/2023] Open
Abstract
Paecilomyces variotii xylanase was, produced in stirred tank bioreactor with yield of 760 U/mL and purified using 70% ammonium sulfate precipitation and ultra-filtration causing 3.29-fold purification with 34.47% activity recovery. The enzyme purity was analyzed on sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) confirming its monomeric nature as single band at 32 KDa. Zymography showed xylan hydrolysis activity at the same band. The purified enzyme had optimum activity at 60 °C and pH 5.0. The pH stability range was 5-9 and the temperature stability was up 70 °C. Fe2+and Fe3+ exhibited inhibition of xylanase enzyme while Cu2+, Ca2+, Mg2+ and Mn2+ stimulated its activity. Mercaptoethanol stimulated its activity; however, Na2-EDTA and SDS inhibited its activity. The purified xylanase could hydrolyze beechwood xylan but not carboxymethyl cellulose (CMC), avicel or soluble starch. Paecilomyces variotii xylanase Km and Vmax for beechwood were determined to be 3.33 mg/mL and 5555 U/mg, respectively. The produced xylanase enzyme applied on beech xylan resulted in different types of XOS. The antioxidant activity of xylo-oligosaccharides increased from 15.22 to 70.57% when the extract concentration was increased from 0.1 to 1.5 mg/mL. The enzyme characteristics and kinetic parameters indicated its high efficiency in the hydrolysis of xylan and its potential effectiveness in lignocellulosic hydrolysis and other industrial application. It also suggests the potential of xylanase enzyme for production of XOS from biomass which are useful in food and pharmaceutical industries.
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Mel’kina OE, Sineoky SP. Prospects for the Use of Methylotrophic Yeast in the Creation of Industrial Producers of Feed Enzymes. APPL BIOCHEM MICRO+ 2020. [DOI: 10.1134/s0003683820080050] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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9
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Khalid A, Ye M, Wei C, Dai B, Yang R, Huang S, Wang Z. Production of β-glucanase and protease from Bacillus velezensis strain isolated from the manure of piglets. Prep Biochem Biotechnol 2020; 51:497-510. [PMID: 33108947 DOI: 10.1080/10826068.2020.1833344] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
In this study, a strain producing β-glucanase and protease, identified as Bacillus velezensis Y1, was isolated from the manure of piglet. We attempted to produce β-glucanase and protease after optimization of various process parameters with the submerged fermentation. The effects of each factor on producing β-glucanase and protease were as follows: temperature > time > pH > loaded liquid volume. The properties of the β-glucanase showed that the most suitable reaction temperature was 65 °C and pH was 6.0. However for protease optimum reaction temperature was 50 °C, and pH was 6.0. The amplified PCR fragments of β-glucanase and protease were 1434 bp containing an open reading frame of 1413 bp encoding a protein with 444 amino acids and 1752 bp containing an open reading frame of 1521 bp encoding a protein with 506 amino acids, respectively. So, the study demonstrated a viable approach of using newly identified B. velezensis Y1 strain for the maximum yield of two industrially important enzymes.
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Affiliation(s)
- Anam Khalid
- College of Life Science, Anhui Agricultural University, Hefei, China
| | - Miao Ye
- College of Life Science, Anhui Agricultural University, Hefei, China
| | - Chunjie Wei
- College of Life Science, Anhui Agricultural University, Hefei, China
| | - Binghong Dai
- College of Life Science, Anhui Agricultural University, Hefei, China
| | - Ru Yang
- College of Life Science, Anhui Agricultural University, Hefei, China
| | - Shoujun Huang
- College of Life Science, Anhui Agricultural University, Hefei, China
| | - Zaigui Wang
- College of Life Science, Anhui Agricultural University, Hefei, China
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10
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Park J, Carey J. Dietary Enzyme Supplementation in Duck Nutrition: A review. J APPL POULTRY RES 2019. [DOI: 10.3382/japr/pfz041] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023] Open
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Singh G, Kaur S, Khatri M, Arya SK. Biobleaching for pulp and paper industry in India: Emerging enzyme technology. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2019. [DOI: 10.1016/j.bcab.2019.01.019] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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12
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Haldar S, Nazareth SW. Taxonomic diversity of bacteria from mangrove sediments of Goa: metagenomic and functional analysis. 3 Biotech 2018; 8:436. [PMID: 30306005 DOI: 10.1007/s13205-018-1441-6] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2018] [Accepted: 09/24/2018] [Indexed: 12/12/2022] Open
Abstract
The present study compared the taxonomic diversity and evaluated the functional attributes of the bacterial species from Mandovi and Zuari mangrove sediments, Goa, using paired-end amplicon sequencing of 16S rDNA and culture-based analyses, respectively. 16S rDNA sequencing revealed Proteobacteria, Firmicutes, and Actinobacteria as the dominant phyla in both the sediments. However, the abundance of these phyla significantly differed between the samples. Bacteroidetes from Mandovi sediment, and Acidobacteria and Gemmatimonadetes from Zuari sediment were the other exclusive major phyla. Chloroflexi, Cyanobacteria, Nitrospirae, Planctomycetes, Verrucomicrobia, and WS3 were the minor phyla observed in both. However, a significant difference in the distribution of minor phyla and lower bacterial taxa under each phylum was noted between the sediments, indicating that the resident microbial flora completely differed between them. This was further validated by high values from distance matrix analyses between the samples. In addition, the pathogenic Vibrio sp. was recorded exclusively in Mandovi sediment, while higher abundance of ecologically important bacterial classes including Gammaproteobacteria, Alphaproteobacteria, Deltaproteobacteria, and Bacilli was observed in Zuari sediment. Taken together, the data indicated that Zuari sediment was taxonomically richer than Mandovi sediment, while a greater incidence of anthropogenic activities occurred in the latter. This observation was further validated by non-parametric richness estimators which were found to be higher for Zuari sediment. The cultured bacterial isolates, all identified as Firmicutes, were tested for activities related to biofertilization and production of enzymes to be used for bioremediation and chemotherapeutic applications. Higher number of bacterial isolates from Mandovi was found to produce indole-acetic-acid, tannase, xylanase, and glutaminase enzymes, and could solubilize phosphate. In contrast, higher proportion of bacterial isolates from Zuari sediment were capable of producing amylase, cellulase, gelatinase, laccase, lipase, protease, and asparaginase enzymes, emphasizing the fact that the Zuari mangrove sediment is a rich reservoir for economically and biotechnologically important bacterial species.
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Affiliation(s)
- Shyamalina Haldar
- Department of Microbiology, Goa University, Taleigao Plateau, Taleigão, Goa 403206 India
| | - Sarita W Nazareth
- Department of Microbiology, Goa University, Taleigao Plateau, Taleigão, Goa 403206 India
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Mongkorntanyatip K, Limsakul P, Ratanakhanokchai K, Khunrae P. Overexpression and characterization of alkaliphilic Bacillus firmus strain K-1 xylanase. ACTA ACUST UNITED AC 2017. [DOI: 10.1016/j.anres.2018.03.011] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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14
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Yadav SK. Technological advances and applications of hydrolytic enzymes for valorization of lignocellulosic biomass. BIORESOURCE TECHNOLOGY 2017; 245:1727-1739. [PMID: 28552567 DOI: 10.1016/j.biortech.2017.05.066] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2017] [Revised: 05/10/2017] [Accepted: 05/11/2017] [Indexed: 06/07/2023]
Abstract
Hydrolytic enzymes are indispensable tools in the production of various foodstuffs, drugs, and consumables owing to their applications in almost every industrial process nowadays. One of the foremost areas of interest involving the use of hydrolytic enzymes is in the transformation of lignocellulosic biomass into value added products. However, limitations of the processes due to inadequate enzyme activity and stability with a narrow range of pH and temperature optima often limit their effective usage. The innovative technologies, involving manipulation of enzyme activity and stability through mutagenesis, genetic engineering and metagenomics lead to a major leap in all the fields using hydrolytic enzymes. This article provides recent advancement towards the isolation and use of microbes for lignocellulosic biomass utilisation, microbes producing the hydrolytic enzymes, the modern age technologies used to manipulate and enhance the hydrolytic enzyme activity and the applications of such enzymes in value added products development from lignocellulosic biomass.
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Affiliation(s)
- Sudesh Kumar Yadav
- Center of Innovative and Applied Bioprocessing (CIAB), Knowledge City, Sector-81, Mohali, India.
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15
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Lin C, Shen Z, Zhu T, Qin W. Bacterial Xylanase in Pseudomonas boreopolis LUQ1 is Highly Induced by Xylose. CANADIAN JOURNAL OF BIOTECHNOLOGY 2017. [DOI: 10.24870/cjb.2017-000112] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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16
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Boucherba N, Gagaoua M, Bouanane-Darenfed A, Bouiche C, Bouacem K, Kerbous MY, Maafa Y, Benallaoua S. Biochemical properties of a new thermo- and solvent-stable xylanase recovered using three phase partitioning from the extract of Bacillus oceanisediminis strain SJ3. BIORESOUR BIOPROCESS 2017; 4:29. [PMID: 28736694 PMCID: PMC5498614 DOI: 10.1186/s40643-017-0161-9] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2017] [Accepted: 07/01/2017] [Indexed: 11/29/2022] Open
Abstract
The present study investigates the production and partial biochemical characterization of an extracellular thermostable xylanase from the Bacillus oceanisediminis strain SJ3 newly recovered from Algerian soil using three phase partitioning (TPP). The maximum xylanase activity recorded after 2 days of incubation at 37 °C was 20.24 U/ml in the presence of oat spelt xylan. The results indicated that the enzyme recovered in the middle phase of TPP system using the optimum parameters were determined as 50% ammonium sulfate saturation with 1.0:1.5 ratio of crude extract: t-butanol at pH and temperature of 8.0 and 10 °C, respectively. The xylanase was recovered with 3.48 purification fold and 107% activity recovery. The enzyme was optimally active at pH 7.0 and was stable over a broad pH range of 5.0–10. The optimum temperature for xylanase activity was 55 °C and the half-life time at this temperature was of 6 h. At this time point the enzyme retained 50% of its activity after incubation for 2 h at 95 °C. The crude enzyme resist to sodium dodecyl sulfate and β-mercaptoethanol, while all the tested ions do not affect the activity of the enzyme. The recovered enzyme is, at least, stable in tested organic solvents except in propanol where a reduction of 46.5% was observed. Further, the stability of the xylanase was higher in hydrophobic solvents where a maximum stability was observed with cyclohexane. These properties make this enzyme to be highly thermostable and may be suggested as a potential candidate for application in some industrial processes. To the best of our knowledge, this is the first report of xylanase activity and recoverey using three phase partitioning from B. oceanisediminis.
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Affiliation(s)
- Nawel Boucherba
- Laboratory of Applied Microbiology, Faculty of Nature Science and Life, University of Bejaia, 06000 Bejaia, Algeria
| | - Mohammed Gagaoua
- INATAA, Université des Frères Mentouri Constantine 1, Route de Ain El-Bey, 25000 Constantine, Algeria.,UMR1213 Herbivores, INRA, VetAgro Sup, Clermont Université, Université de Lyon, 63122 Saint-Genès-Champanelle, France
| | - Amel Bouanane-Darenfed
- Laboratory of Cellular and Molecular Biology, Microbiology Team, Faculty of Biological Sciences, University of Sciences, Technology of Houari Boumediene (USTHB), PO Box 32, El Alia, Bab Ezzouar, 16111 Algiers, Algeria
| | - Cilia Bouiche
- Laboratory of Applied Microbiology, Faculty of Nature Science and Life, University of Bejaia, 06000 Bejaia, Algeria
| | - Khelifa Bouacem
- Laboratory of Cellular and Molecular Biology, Microbiology Team, Faculty of Biological Sciences, University of Sciences, Technology of Houari Boumediene (USTHB), PO Box 32, El Alia, Bab Ezzouar, 16111 Algiers, Algeria
| | - Mohamed Yacine Kerbous
- Laboratory of Applied Microbiology, Faculty of Nature Science and Life, University of Bejaia, 06000 Bejaia, Algeria
| | - Yacine Maafa
- Laboratory of Applied Microbiology, Faculty of Nature Science and Life, University of Bejaia, 06000 Bejaia, Algeria
| | - Said Benallaoua
- Laboratory of Applied Microbiology, Faculty of Nature Science and Life, University of Bejaia, 06000 Bejaia, Algeria
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17
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Extracellular expression of alkali tolerant xylanase from Bacillus subtilis Lucky9 in E. coli and application for xylooligosaccharides production from agro-industrial waste. Int J Biol Macromol 2017; 96:249-256. [DOI: 10.1016/j.ijbiomac.2016.11.032] [Citation(s) in RCA: 53] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2016] [Revised: 11/02/2016] [Accepted: 11/03/2016] [Indexed: 01/11/2023]
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18
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Chakdar H, Kumar M, Pandiyan K, Singh A, Nanjappan K, Kashyap PL, Srivastava AK. Bacterial xylanases: biology to biotechnology. 3 Biotech 2016; 6:150. [PMID: 28330222 PMCID: PMC4929084 DOI: 10.1007/s13205-016-0457-z] [Citation(s) in RCA: 68] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2016] [Accepted: 06/10/2016] [Indexed: 12/04/2022] Open
Abstract
In this review, a comprehensive discussion exclusively on bacterial xylanases; their gene organization; different factors and conditions affecting enzyme yield and activity; and their commercial application have been deliberated in the light of recent research findings and extensive information mining. Improved understanding of biological properties and genetics of bacterial xylanase will enable exploitation of these enzymes for many more ingenious biotechnological and industrial applications.
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19
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Khusro A, Kaliyan BK, Al-Dhabi NA, Arasu MV, Agastian P. Statistical optimization of thermo-alkali stable xylanase production from Bacillus tequilensis strain ARMATI. ELECTRON J BIOTECHN 2016. [DOI: 10.1016/j.ejbt.2016.04.002] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022] Open
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20
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Moteshafi H, Hashemi M, Mousavi S, Mousivand M. Characterization of produced xylanase by Bacillus subtilis D3d newly isolated from apricot phyllosphere and its potential in pre-digestion of BSG. J IND ENG CHEM 2016. [DOI: 10.1016/j.jiec.2016.03.036] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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21
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Dias M, Melo M, Schwan R, Silva C. A new alternative use for coffee pulp from semi-dry process to β-glucosidase production by Bacillus subtilis. Lett Appl Microbiol 2015; 61:588-95. [DOI: 10.1111/lam.12498] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2015] [Revised: 09/10/2015] [Accepted: 09/14/2015] [Indexed: 11/29/2022]
Affiliation(s)
- M. Dias
- Department of Biology; Federal University of Lavras; Lavras MG Brazil
| | - M.M. Melo
- Department of Biology; Federal University of Lavras; Lavras MG Brazil
| | - R.F. Schwan
- Department of Biology; Federal University of Lavras; Lavras MG Brazil
| | - C.F. Silva
- Department of Biology; Federal University of Lavras; Lavras MG Brazil
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22
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Production and optimization of xylooligosaccharides from corncob by Bacillus aerophilus KGJ2 xylanase and its antioxidant potential. Int J Biol Macromol 2015; 79:595-600. [DOI: 10.1016/j.ijbiomac.2015.05.046] [Citation(s) in RCA: 59] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2015] [Revised: 05/19/2015] [Accepted: 05/28/2015] [Indexed: 11/18/2022]
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23
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Partial Characterization of Xylanase Produced by Caldicoprobacter algeriensis, a New Thermophilic Anaerobic Bacterium Isolated from an Algerian Hot Spring. Appl Biochem Biotechnol 2014; 174:1969-81. [DOI: 10.1007/s12010-014-1153-2] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2014] [Accepted: 08/15/2014] [Indexed: 11/25/2022]
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24
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Kumar L, Kumar D, Nagar S, Gupta R, Garg N, Kuhad RC, Gupta VK. Modulation of xylanase production from alkaliphilic Bacillus pumilus VLK-1 through process optimization and temperature shift operation. 3 Biotech 2014; 4:345-356. [PMID: 28324471 PMCID: PMC4145618 DOI: 10.1007/s13205-013-0160-2] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2013] [Accepted: 07/29/2013] [Indexed: 11/16/2022] Open
Abstract
This study was aimed at enhancing the production of xylanase from an alkaliphilic Bacillus pumilus VLK-1 in submerged fermentation using wheat bran, a cheap and abundantly available agro-residue, through process optimization and to monitor the effect of temperature shift operation on it. The potential of xylanase in saccharification of wheat straw was also investigated. The results showed that optimization of the fermentation process by one variable approach increased the enzyme yield from 402 to 4,986 IU/ml. Subsequently, optimization of nitrogen and carbon sources through response surface methodology led to high level xylanase production (7,295 IU/ml) which was 1.46-fold greater than one variable approach after 56 h of cultivation at 30 °C. Temperature shift operation during fermentation resulted in maximum xylanase production in lesser duration (48 h instead of 56 h). Enzymatic hydrolysis of the alkali pre-treated wheat straw with 500 IU xylanase alone released 173 ± 8 mg sugars/g whereas in combination with cellulase and β-glucosidase released 553 ± 12 mg sugars/g dry substrate in 6 h, indicating its potential in saccharification of the lignocellulosic substrate. Temperature shift operation is likely to be attractive for large scale industrial fermentation due to significant reduction in the operating cost. To our knowledge, this is the first report which showed the effect of temperature shift operation on xylanase production from bacteria. The xylanase production from Bacillus sp. in the present study is close to the highest titre reported in the literature. An enhanced xylanase production using wheat bran, a cheap and abundantly available agro-residue, will apparently reduce the enzyme cost, which would be beneficial for industry.
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Affiliation(s)
- Lalit Kumar
- Department of Biochemistry, Kurukshetra University, Kurukshetra, 136119, Haryana, India
| | - Davender Kumar
- Department of Biochemistry, Kurukshetra University, Kurukshetra, 136119, Haryana, India
| | - Sushil Nagar
- Department of Biochemistry, Kurukshetra University, Kurukshetra, 136119, Haryana, India
| | - Rishi Gupta
- Lignocellulose Biotechnology Laboratory, Department of Microbiology, University of Delhi South Campus, Benito Juarez Road, New Delhi, 110021, India
| | - Neelam Garg
- Department of Microbiology, Kurukshetra University, Kurukshetra, 136119, Haryana, India
| | - Ramesh Chander Kuhad
- Lignocellulose Biotechnology Laboratory, Department of Microbiology, University of Delhi South Campus, Benito Juarez Road, New Delhi, 110021, India
| | - Vijay Kumar Gupta
- Department of Biochemistry, Kurukshetra University, Kurukshetra, 136119, Haryana, India.
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25
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Dias M, da Cruz Pedrozo Miguel MG, Duarte WF, Silva CF, Schwan RF. Epiphytic bacteria biodiversity in Brazilian Cerrado fruit and their cellulolytic activity potential. ANN MICROBIOL 2014. [DOI: 10.1007/s13213-014-0927-7] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022] Open
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26
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Enhanced production of cellulase-free, thermo-alkali-solvent-stable xylanase from Bacillus altitudinis DHN8, its characterization and application in sorghum straw saccharification. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2014. [DOI: 10.1016/j.bcab.2013.10.003] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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27
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Xie F, Quan S, Liu D, Ma H, Li F, Zhou F, Chen G. Purification and characterization of a novel α-amylase from a newly isolated Bacillus methylotrophicus strain P11-2. Process Biochem 2014. [DOI: 10.1016/j.procbio.2013.09.025] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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28
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Peng Q, Yuan Y, Gao M. Bacillus pumilus, a Novel Ginger Rhizome Rot Pathogen in China. PLANT DISEASE 2013; 97:1308-1315. [PMID: 30722133 DOI: 10.1094/pdis-12-12-1178-re] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Ginger rhizome rot is a major factor limiting the yield and marketability of ginger in Shandong Province, China. In order to identify the pathogen causing ginger rhizome rot, evaluate its pathogenicity, and explore its pathogenesis, diseased ginger rhizomes and surrounding soils were collected. A gram-positive, spore-forming, rod-shaped bacterium, designated GR8, was frequently isolated from the ginger rhizome samples. The bacterium was identified as Bacillus pumilus based on physio-biochemical and molecular biology characteristics. Pathogenicity studies with GR8 showed that it could cause disease of the tested rhizomes slices and the entire rhizome when wounded but no disease occurred when the rhizome was not wounded. Preliminary pathogenicity studies demonstrated that cell-free cultures of GR8 could not cause any disease symptoms, whereas the bacterial suspensions caused severe symptoms. The pathology studies revealed that infection of GR8 could cause starch grains to shrink from normal size, and destroy the parenchyma cells by invading and propagating in them. This is the first report of B. pumilus causing ginger rhizome rot.
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Affiliation(s)
- Qin Peng
- Key Laboratory of Agricultural and Environmental Microbiology, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, 430071, P.R. China
| | - Yihui Yuan
- Key Laboratory of Agricultural and Environmental Microbiology, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, 430071, P.R. China
| | - Meiying Gao
- Key Laboratory of Agricultural and Environmental Microbiology, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, 430071, P.R. China
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Tarayre C, Brognaux A, Brasseur C, Bauwens J, Millet C, Mattéotti C, Destain J, Vandenbol M, Portetelle D, De Pauw E, Haubruge E, Francis F, Thonart P. Isolation and Cultivation of a Xylanolytic Bacillus subtilis Extracted from the Gut of the Termite Reticulitermes santonensis. Appl Biochem Biotechnol 2013; 171:225-45. [DOI: 10.1007/s12010-013-0337-5] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2013] [Accepted: 06/17/2013] [Indexed: 10/26/2022]
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30
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Enzymatic clarification of fruit juices (Apple, Pineapple, and Tomato) using purified Bacillus pumilus SV-85S xylanase. BIOTECHNOL BIOPROC E 2013. [DOI: 10.1007/s12257-012-0375-9] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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31
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Mittal A, Nagar S, Gupta VK. Production and purification of high levels of cellulase-free bacterial xylanase by Bacillus sp. SV-34S using agro-residue. ANN MICROBIOL 2012. [DOI: 10.1007/s13213-012-0574-9] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
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