Structural insight into the fungal β-glucosidases and their interactions with organics

Utilization of laccase immobilized CdO nanoparticles in synthesis of industrially potent organics and their molecular docking studies

In the present study, Tricholoma giganteum AGHP laccase was immobilized on amino-functionalized cadmium oxide nanoparticles (CdO NPs) which was carried out by glutaraldehyde. The synthesized CdO NPs were characterized by using transmission electron microscopy (TEM), Energy dispersive X-ray analysis (EDXA) and X-ray diffraction (XRD) analysis which reflected the NPs had an average size of 35 nm with hexagonal and irregular shapes. Fourier transform infra-red (FTIR) study of laccase with amino-functionalized CdO (lac-CdO) NPs confirmed the crosslinking of laccase with CdO NPs. With immobilized laccase, a shift in pH (5.5) and temperature (35 ℃) optima was observed, when compared to free laccase (pH 4.5, 30 ℃). Lac-CdO NPs displayed 1.15 times higher stability (90 ± 0.47%) than free laccase (78 ± 0.69%) at optimum pH of 5.5. Immobilized laccase showed 1.19-fold improvement in thermal stability and 2.25-fold increment in half-life after 3 h of incubation at 50 ℃ as compared to free laccase. Recycling capability study demonstrated that lac-CdO NPs were able to retain 85 ± 0.68% of relative activity at the end of 20th 2,2-azinobis-3-ethylbenzthiozoline-6-sulfonic acid (ABTS) oxidation cycle. In addition, lac-CdO NPs showed remarkable reusability in catalysing various organic synthesis reactions even after several cycle of catalysis. Furthermore, the interactions of organic synthesis reactions and interacted residues were observed by assessing the molecular docking poses of T. giganteum laccase with substrates. The obtained results would be advantageous to develop a biocatalyst over a chemical catalyst for effective synthesis of potent organics having industrial importance.

Molecular insight into Aspergillus oryzae β-mannanase interacting with mannotriose revealed by molecular dynamic simulation study

Fungal β-mannanases hydrolyze β-1, 4-glycosidic bonds of mannans and find application in the generation of mannose and prebiotic mannooligosaccharides (MOS). Previously, a MOS generating β-mannanase from Aspergillus oryzae MTCC 1846 (βManAo) was characterized and its structural and functional properties were unraveled through homology modeling and molecular dynamics in this study. The βManAo model was validated with 92.9% and 6.5% of the residues found to be distributed in the most favorable and allowed regions of the Ramachandran plot. Glu244 was found to play a key role in the interaction with mannotriose, indicating conserved amino acids for the catalytic reaction. A detailed metadynamic analysis of the principal components revealed the presence of an α₈-helix in the C-terminus which was very flexible in nature and energy landscapes suggested high conformation sub-states and the complex dynamic behavior of the protein. The binding of the M3 substrate stabilized the β-mannanase and resulted in a reduction in the intermediate conformational sub-states evident from the free energy landscapes. The active site of the β-mannanase is mostly hydrophilic in nature which is accordance with our results, where the major contribution in the binding energy of the substrate with the active site is from electrostatic interactions. Define Secondary Structure of Proteins (DSSP) analysis revealed a major transition of the protein from helix to β-turn for binding with the mannotriose. The molecular dynamics of the βManAo–mannotriose model, and the role and interactions of catalytic residues with ligand were also described. The substrate binding pocket of βManAo was found to be highly dynamic and showed large, concerted movements. The outcomes of the present study can be exploited in further understanding the structural properties and functional dynamics of βManAo.

The enzymatic characters of heterologous expressed novel β-1, 4-glucosidase originated from Aspergillus fresenii

β-1, 4-glucosidases generate glucose from cellobiose and oligosaccharides, enhancing the productivity in biorefinery and the bioconversion process as well as the nutritional value in food and feed. With the high-throughput sequencing technique, a novel β-1, 4-glucosidase, named bgl T2, containing 861 amino acid residues, was found from Aspergillus fresenii. bgl T2 belongs to the glycosyl hydrolase (GH) family 3. The bgl T2 that expressed by Komagataella phaffii X33 presented the highest activity at 55 °C and pH 5.5. The half-lives of bgl T2 under 50 °C, 55 °C, 60 °C, and 65 °C were 9 min 36 s, 4 min 22 s, 117 s, and 68 s, respectively. The bgl T2 was stable between pH 3.0 to pH 8.0. The Michaelis constant (K _m) and the theoretical maximum rate (V _max) of bgl T2 were 0.0007 mol/L and 9 × 10^-8 mol/L/s, respectively. In a 5 L fermentation vessel, the recombinant K.phaffii X33 could yield a β-1, 4-glucosidase activity of 4.45 U/mL after 96 h methanol inducement. As an important member of cellulases, the novel bgl T2 might contribute to bioenergy, food processing, feed enrichment, and nutritional study, etc. This study also developed a path to obtain new enzymes depending on high-throughput sequencing technique.