1
|
Liu S, Shao L, Dong Y, Gong J, Yang X, Li F, Xu X, Wang H. Hydrolysis of myofibrillar proteins by protease AprA secreted from Pseudomonas fragi: Preference for degrading Ala-linked peptide bonds. Food Chem 2025; 479:143756. [PMID: 40073553 DOI: 10.1016/j.foodchem.2025.143756] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2024] [Revised: 02/25/2025] [Accepted: 03/04/2025] [Indexed: 03/14/2025]
Abstract
Extracellular proteases of bacteria have attracted attention in recent years. Alkaline protease AprA secreted from Pseudomonas fragi has been shown to cause spoilage in chilled meat and to degrade myofibrillar proteins (MPs), but the spoilage mechanism was unknown. AprA possessed a high affinity for substrate proteins (Km = 1.40 mg/mL, Vmax = 11.20 mg/mL/min) and was controlled by metal ions and inhibitors. AprA exhibited strong hydrolytic activity on MPs, with alterations in secondary structure, tertiary structure and sulfhydryl content. Molecular docking and molecular dynamics revealed that AprA bound to actin and myosin heavy chain (MHC) through hydrogen bonds, hydrophobic interaction and salt bridges, respectively. AprA exhibited a broad spectrum of cleavage, with a relative preference for Ala-linked peptide bonds, according to peptide release kinetics. The above results reveal the mechanism of bacterial spoilage of chilled meat at low temperatures. Of course, this provides a theoretical basis for targeted control of the meat spoilage caused by AprA.
Collapse
Affiliation(s)
- Silu Liu
- State Key Laboratory of Meat Quality Control and Cultured Meat Development, Nanjing Agricultural University, Nanjing 210095, PR China
| | - Liangting Shao
- State Key Laboratory of Meat Quality Control and Cultured Meat Development, Nanjing Agricultural University, Nanjing 210095, PR China
| | - Yang Dong
- State Key Laboratory of Meat Quality Control and Cultured Meat Development, Nanjing Agricultural University, Nanjing 210095, PR China
| | - Junming Gong
- State Key Laboratory of Meat Quality Control and Cultured Meat Development, Nanjing Agricultural University, Nanjing 210095, PR China
| | - Xinqi Yang
- State Key Laboratory of Meat Quality Control and Cultured Meat Development, Nanjing Agricultural University, Nanjing 210095, PR China
| | - Fang Li
- Anhui Konka Tongchuang Household Appliances Co., Ltd., Chuzhou 239000, PR China
| | - Xinglian Xu
- State Key Laboratory of Meat Quality Control and Cultured Meat Development, Nanjing Agricultural University, Nanjing 210095, PR China
| | - Huhu Wang
- State Key Laboratory of Meat Quality Control and Cultured Meat Development, Nanjing Agricultural University, Nanjing 210095, PR China.
| |
Collapse
|
2
|
Li Z, Xing Y, Liu P, Liao W, Miao L. Redox and solvent-stable alkaline serine protease from Bacillus patagoniensis DB-5: heterologous expression, properties, and biotechnological applications. Front Microbiol 2025; 16:1558419. [PMID: 40190736 PMCID: PMC11970705 DOI: 10.3389/fmicb.2025.1558419] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2025] [Accepted: 02/20/2025] [Indexed: 04/09/2025] Open
Abstract
The aprBP gene from Bacillus patagoniensis DB-5, encoding a 378-amino-acid alkaline protease, was cloned and expressed in Escherichia coli. The amino acid sequence of APrBP showed 62.8-84.4% identity with the S8 peptidase subtilisin family alkaline proteases reported in the literature. Recombinant APrBP was purified using Ni-NTA affinity chromatography with 45.61% recovery and a homogeneous band was detected at approximately 38 kDa on the SDS-PAGE gel. The optimum temperature of APrBP was 60°C. The presence of 2 mM Ca2+ significantly enhanced the optimal temperature and thermostability. The enzyme demonstrated optimum activity at pH 12 and maintained high stability at pH 8.0-11.0. Protease activity was stimulated by Mn2+, Ca2+, Mg2+, Ni2+, TritonX-100, Tween-20 and Tween-80, while completely inactivated by PMSF, EDTA and Cu2+. The APrBP exhibited good tolerance to oxidizing and reducing agents. Notably, the protease exhibited remarkable stability in 50% (v/v) concentrations of several organic solvents, such as methanol, acetone, glycerol, dimethyl sulfoxide, n-hexane, and ethyl acetate. The APrBP efficiently hydrolyzed natural proteins, demonstrating the highest catalytic efficiency for casein, excellent hydrolysis activity for bovine serum albumin, hemoglobin, and keratin, and favorable hydrolysis ability for whey proteins. Moreover, molecular docking results revealed stable interactions between APrBP and casein, hemoglobin, whey proteins and keratin. This study indicated that APrBP has some useful properties and explored its potential as a bio-additive detergent as well as in utilizing feather waste and whey protein.
Collapse
Affiliation(s)
| | | | | | | | - Lihong Miao
- College of Life Science and Technology, Wuhan Polytechnic University, Wuhan, China
| |
Collapse
|
3
|
Xu B, Li Z, Guo Q, Zha L, Li C, Yu P, Chen M, Zhao Y. The Purification and Characterization of a Novel Neutral Protease from Volvariella volvacea Fruiting Bodies and the Enzymatic Digestion of Soybean Isolates. J Fungi (Basel) 2025; 11:190. [PMID: 40137228 PMCID: PMC11942766 DOI: 10.3390/jof11030190] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2025] [Revised: 02/22/2025] [Accepted: 02/25/2025] [Indexed: 03/27/2025] Open
Abstract
A novel protease was isolated from the fruiting bodies of the straw mushroom Volvariella volvacea. The protease was purified 13.48-fold using a series of techniques, including ammonium sulfate precipitation, ultrafiltration, diethylaminoethyl fast-flow (DEAE FF) ion-exchange chromatography, and Superdex 75 gel filtration chromatography, resulting in a specific enzyme activity of 286.82 U/mg toward casein as a substrate. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) analysis revealed that the purified protease had a molecular weight of 24 kDa. The enzyme exhibited optimal activity at pH 7 and 50 °C, showing sensitivity to alkaline conditions and instability at elevated temperatures. The presence of Ca2+ significantly enhanced enzyme activity, whereas Ni2+ and Cu2+ exerted strong inhibitory effects, with other metal ions showing weak inhibition. β-mercaptoethanol, Tween-80, and Triton X-100 had more pronounced inhibitory effects, whereas PMSF, EDTA, and CTAB had weaker inhibitory effects. The Michaelis constant (Km) and maximum velocity (Vm) of the protease were determined to be 1.34 g/L and 3.45 μg/(mL·min), respectively. The protease exhibited a greater degree of enzymatic degradation of soybean-isolate protein (7.58%) compared to trypsin (5.24%), with the enzyme product containing a high percentage of medicinal amino acids (73.54%), particularly phenylalanine (Phe) and arginine (Arg), suggesting their presence at the enzyme's active site. These findings suggest that the protease from V. volvacea holds promising potential for applications in the food industry, particularly in protein hydrolysate production and flavor enhancement.
Collapse
Affiliation(s)
- Baoting Xu
- College of Food Science and Technology, Shanghai Ocean University, Shanghai 201306, China; (B.X.); (P.Y.)
- Institute of Edible Fungi, Shanghai Academy of Agricultural Sciences, Shanghai 201403, China; (Z.L.); (Q.G.); (L.Z.); (C.L.)
| | - Zhiping Li
- Institute of Edible Fungi, Shanghai Academy of Agricultural Sciences, Shanghai 201403, China; (Z.L.); (Q.G.); (L.Z.); (C.L.)
| | - Qian Guo
- Institute of Edible Fungi, Shanghai Academy of Agricultural Sciences, Shanghai 201403, China; (Z.L.); (Q.G.); (L.Z.); (C.L.)
| | - Lei Zha
- Institute of Edible Fungi, Shanghai Academy of Agricultural Sciences, Shanghai 201403, China; (Z.L.); (Q.G.); (L.Z.); (C.L.)
| | - Chuanhua Li
- Institute of Edible Fungi, Shanghai Academy of Agricultural Sciences, Shanghai 201403, China; (Z.L.); (Q.G.); (L.Z.); (C.L.)
| | - Panling Yu
- College of Food Science and Technology, Shanghai Ocean University, Shanghai 201306, China; (B.X.); (P.Y.)
- Institute of Edible Fungi, Shanghai Academy of Agricultural Sciences, Shanghai 201403, China; (Z.L.); (Q.G.); (L.Z.); (C.L.)
| | - Mingjie Chen
- Institute of Edible Fungi, Shanghai Academy of Agricultural Sciences, Shanghai 201403, China; (Z.L.); (Q.G.); (L.Z.); (C.L.)
| | - Yan Zhao
- Institute of Edible Fungi, Shanghai Academy of Agricultural Sciences, Shanghai 201403, China; (Z.L.); (Q.G.); (L.Z.); (C.L.)
| |
Collapse
|
4
|
Basharat S, Zhai L, Jiang F, Asjad T, Khan A, Liao X. Screening and Comparative Genomics of Probiotic Lactic Acid Bacteria from Bee Bread of Apis Cerana: Influence of Stevia and Stevioside on Bacterial Cell Growth and the Potential of Fermented Stevia as an Antidiabetic, Antioxidant, and Antifungal Agent. Microorganisms 2025; 13:216. [PMID: 40005583 PMCID: PMC11857352 DOI: 10.3390/microorganisms13020216] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2025] [Revised: 01/13/2025] [Accepted: 01/14/2025] [Indexed: 02/27/2025] Open
Abstract
The purpose of this research is to identify and characterize lactic acid bacteria (LAB) species in bee bread produced by honey bees (Apis Cerana) in the east mountain area of Suzhou, China. We isolated three strains, Apilactobacillus kunkeei (S1), Lactiplantibacillus plantarum (S2), and Lacticaseibacillus pentosus (S3), with S2 producing the highest amount of lactic acid. Phylogenetic analysis indicated that these isolates, along with the type strain, formed a distinct sub-cluster within the LAB group. The strains exhibited non-hemolytic activity, lacked functional virulence factors, demonstrated high acid and bile tolerance, strong adhesion to intestinal cells, and antimicrobial activity against pathogens, collectively indicating their safety and high probiotic potential for therapeutic applications. Our studies demonstrated that S2 and S3 grew well in the presence of stevia leaf powder and steviosides, while S1 showed reduced growth and inhibitory effects. Importantly, the stevia-fermented strains exhibited strong probiotic potential along with significant antidiabetic, antioxidant, and antifungal properties in vitro. These findings highlight their potential applications in the food, feed, and pharmaceutical industries. Future research should focus on in vivo experiments to validate these results and evaluate compatibility among the strains before their application in functional foods.
Collapse
Affiliation(s)
- Samra Basharat
- Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, Wuxi 214122, China; (S.B.); (F.J.); (T.A.); (A.K.)
| | - Lixin Zhai
- Henan Key Laboratory of Biomarker Based Rapid-Detection Technology for Food Safety, Institute of Molecular Detection Technology and Equipment, Xuchang University, Xuchang 461000, China;
| | - Fuyao Jiang
- Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, Wuxi 214122, China; (S.B.); (F.J.); (T.A.); (A.K.)
| | - Tanzila Asjad
- Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, Wuxi 214122, China; (S.B.); (F.J.); (T.A.); (A.K.)
| | - Adil Khan
- Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, Wuxi 214122, China; (S.B.); (F.J.); (T.A.); (A.K.)
| | - Xiangru Liao
- Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, Wuxi 214122, China; (S.B.); (F.J.); (T.A.); (A.K.)
| |
Collapse
|
5
|
Yao H, Liu S, Chang R, Liu T, Zhou Z, Mao J. Changes of shrimp myofibrillar proteins hydrolyzed by Virgibacillus proteases: Structural characterization, mechanism visualization, and flavor compound formation. Food Res Int 2025; 200:115470. [PMID: 39779081 DOI: 10.1016/j.foodres.2024.115470] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2024] [Revised: 11/15/2024] [Accepted: 11/26/2024] [Indexed: 01/11/2025]
Abstract
To explore the mechanism of Virgibacillus proteases on hydrolysis of shrimp myofibrillar protein (SMP) and formation of volatile compounds, the fermented broth of Virgibacillus halodenitrificans was purified and the protease was identified as peptidase S8. The enzyme had optimum activity at pH 7.0-8.5 and 40-50 °C, and showed good stability at pH 6.5-8.5 and 20-50 °C. The enzyme showed certain salt and metal ion tolerance. Inhibitor results indicated that the enzyme might belong to the serine protease family. V. halodenitrificans proteases (BP) had a stronger ability to degrade SMP compared to Bacillus subtilis proteases (BS). After 60 min of hydrolysis, the hydrolysis index and surface hydrophobicity value of the BP sample were 36.7 % and 177.5 higher than those of the BS sample, respectively. Various spectral measurement results showed that the structural conformation of the BP-treated SMP was significantly changed, with a smaller particle size (510.4 nm) and a lower zeta potential (-27.7 mV). Molecular docking results showed that the enzyme had the highest degradation capacity for myofibrillar heavy chains, followed by actin, and the lowest for myofibrillar light chains, with the interaction forces being hydrogen bonding and hydrophobic interactions. In addition, BP-treated SMP had higher levels of peptides, small molecular weight peptides (<1 kDa), and umami amino acids compared to the BS sample. Solid-phase microextraction-gas chromatography-mass spectrometry (SPME-GC-MS) results showed that BP hydrolysates contained more volatile compounds and key volatile compounds than BS hydrolysates. Pyrazines and alcohols were the main volatile flavor compounds in BS and BP hydrolysates, respectively.
Collapse
Affiliation(s)
- Hongli Yao
- State Key Laboratory of Food Science and Resources, National Engineering Research Center of Cereal Fermentation and Food Biomanufacturing, School of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu 214122, China; Department of Biology and Food Engineering, Bozhou University, Bozhou, Anhui 236800, China
| | - Shuangping Liu
- State Key Laboratory of Food Science and Resources, National Engineering Research Center of Cereal Fermentation and Food Biomanufacturing, School of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu 214122, China; Guangdong Engineering Research Center of High-Value Utilization and Equipment Development of Marine Biological Resources, Southern Marine Science and Engineering Guangdong Laboratory, Guangzhou, Guangdong 511458, China; Jiangnan University (Shaoxing) Industrial Technology Research Institute, Shaoxing, Zhejiang 31200, China; National Engineering Research Center of Huangjiu, Zhejiang Guyuelongshan Shaoxing Wine CO., LTD, Shaoxing 646000, Zhejiang, China.
| | - Rui Chang
- State Key Laboratory of Food Science and Resources, National Engineering Research Center of Cereal Fermentation and Food Biomanufacturing, School of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu 214122, China
| | - Tiantian Liu
- State Key Laboratory of Food Science and Resources, National Engineering Research Center of Cereal Fermentation and Food Biomanufacturing, School of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu 214122, China; Jiangnan University (Shaoxing) Industrial Technology Research Institute, Shaoxing, Zhejiang 31200, China; National Engineering Research Center of Huangjiu, Zhejiang Guyuelongshan Shaoxing Wine CO., LTD, Shaoxing 646000, Zhejiang, China
| | - Zhilei Zhou
- State Key Laboratory of Food Science and Resources, National Engineering Research Center of Cereal Fermentation and Food Biomanufacturing, School of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu 214122, China; Guangdong Engineering Research Center of High-Value Utilization and Equipment Development of Marine Biological Resources, Southern Marine Science and Engineering Guangdong Laboratory, Guangzhou, Guangdong 511458, China; Jiangnan University (Shaoxing) Industrial Technology Research Institute, Shaoxing, Zhejiang 31200, China; National Engineering Research Center of Huangjiu, Zhejiang Guyuelongshan Shaoxing Wine CO., LTD, Shaoxing 646000, Zhejiang, China
| | - Jian Mao
- State Key Laboratory of Food Science and Resources, National Engineering Research Center of Cereal Fermentation and Food Biomanufacturing, School of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu 214122, China; Guangdong Engineering Research Center of High-Value Utilization and Equipment Development of Marine Biological Resources, Southern Marine Science and Engineering Guangdong Laboratory, Guangzhou, Guangdong 511458, China; Jiangnan University (Shaoxing) Industrial Technology Research Institute, Shaoxing, Zhejiang 31200, China; National Engineering Research Center of Huangjiu, Zhejiang Guyuelongshan Shaoxing Wine CO., LTD, Shaoxing 646000, Zhejiang, China.
| |
Collapse
|
6
|
Zhou J, Bai Y, Gao Y, Tian H, Wang M, Kang X, Zhang L, Lv M, Wang S. Efficient Hydrolysis of Fish Parvalbumin by Marine Bacterial Protease VSP2V-280: Allergen Removal. Food Sci Nutr 2025; 13:e4729. [PMID: 39803265 PMCID: PMC11717067 DOI: 10.1002/fsn3.4729] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2024] [Revised: 12/04/2024] [Accepted: 12/15/2024] [Indexed: 01/16/2025] Open
Abstract
Parvalbumin is a major allergen in fish. However, there is currently no effective and safe way to remove this allergen from fish. In this study, protease gene VSP2V-280 of marine bacteria Virgibacillus sp. SP2 was cloned and expressed. The protease enzyme showed maximum activity at 50°C and pH 10.0. Ca2+ and Cu2+ promoted the enzyme. The enzyme showed good parvalbumin degradation efficiency in fish. Based on the gel analysis, when 0.3 mg/mL of parvalbumin was incubated with protease VSP2V-280 (30 U/mL) containing 1 mM Ca2+ for 3 h, the parvalbumin removal rate reached 97%. The enzyme was further used for parvalbumin removal from Ctenopharyngodon idella, Pelteobagrus fulvidraco, Parabramis pekinensis, and Carassius auratus. The parvalbumin removal rate reached 93% in 4 h at an enzyme dosage of 72 U/mL. The study showed the potential of VSP2V-280 to remove parvalbumin from aquatic products.
Collapse
Affiliation(s)
- Junlan Zhou
- Jiangsu Key Laboratory of Marine Bioresources and Environment/Jiangsu Key Laboratory of Marine BiotechnologyJiangsu Ocean UniversityLianyungangChina
- Co‐Innovation Center of Jiangsu Marine bio‐Industry TechnologyJiangsu Ocean UniversityLianyungangChina
| | - Yue Bai
- Jiangsu Key Laboratory of Marine Bioresources and Environment/Jiangsu Key Laboratory of Marine BiotechnologyJiangsu Ocean UniversityLianyungangChina
- Co‐Innovation Center of Jiangsu Marine bio‐Industry TechnologyJiangsu Ocean UniversityLianyungangChina
| | - Yuan Gao
- Jiangsu Key Laboratory of Marine Bioresources and Environment/Jiangsu Key Laboratory of Marine BiotechnologyJiangsu Ocean UniversityLianyungangChina
- Co‐Innovation Center of Jiangsu Marine bio‐Industry TechnologyJiangsu Ocean UniversityLianyungangChina
| | - Huili Tian
- Jiangsu Key Laboratory of Marine Bioresources and Environment/Jiangsu Key Laboratory of Marine BiotechnologyJiangsu Ocean UniversityLianyungangChina
- Co‐Innovation Center of Jiangsu Marine bio‐Industry TechnologyJiangsu Ocean UniversityLianyungangChina
| | - Ming'ao Wang
- Jiangsu Key Laboratory of Marine Bioresources and Environment/Jiangsu Key Laboratory of Marine BiotechnologyJiangsu Ocean UniversityLianyungangChina
- Co‐Innovation Center of Jiangsu Marine bio‐Industry TechnologyJiangsu Ocean UniversityLianyungangChina
| | - Xinxin Kang
- Jiangsu Key Laboratory of Marine Bioresources and Environment/Jiangsu Key Laboratory of Marine BiotechnologyJiangsu Ocean UniversityLianyungangChina
- Co‐Innovation Center of Jiangsu Marine bio‐Industry TechnologyJiangsu Ocean UniversityLianyungangChina
| | - Lei Zhang
- Jiangsu Key Laboratory of Marine Bioresources and Environment/Jiangsu Key Laboratory of Marine BiotechnologyJiangsu Ocean UniversityLianyungangChina
- Co‐Innovation Center of Jiangsu Marine bio‐Industry TechnologyJiangsu Ocean UniversityLianyungangChina
| | - Mingsheng Lv
- Jiangsu Key Laboratory of Marine Bioresources and Environment/Jiangsu Key Laboratory of Marine BiotechnologyJiangsu Ocean UniversityLianyungangChina
- Co‐Innovation Center of Jiangsu Marine bio‐Industry TechnologyJiangsu Ocean UniversityLianyungangChina
| | - Shujun Wang
- Jiangsu Key Laboratory of Marine Bioresources and Environment/Jiangsu Key Laboratory of Marine BiotechnologyJiangsu Ocean UniversityLianyungangChina
- Co‐Innovation Center of Jiangsu Marine bio‐Industry TechnologyJiangsu Ocean UniversityLianyungangChina
| |
Collapse
|
7
|
Aktayeva S, Khassenov B. New Bacillus paralicheniformis strain with high proteolytic and keratinolytic activity. Sci Rep 2024; 14:22621. [PMID: 39349615 PMCID: PMC11444040 DOI: 10.1038/s41598-024-73468-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2024] [Accepted: 09/17/2024] [Indexed: 10/04/2024] Open
Abstract
Bacillus paralicheniformis T7, which exhibits high proteolytic and keratinolytic activities, was isolated from soil in Kazakhstan. Its secreted proteases were thermostable and alkaline, demonstrating maximum activity at 70 °C and pH 9.0. The proteases and keratinases of this strain were sensitive to Ni2+, Co2+, Mn2+, and Cd2+, with Cu2+, Co2+ and Cd2+ negatively affecting keratinolytic activity, and Fe3+ ions have a strong inhibitory effect on proteolytic and keratinolytic activity. Seven proteases were identified in the enzymatic extract of B. paralicheniformis T7: four from the serine peptidase family and three from the metallopeptidase family. The proteases hydrolyzed 1 mg of casein, hemoglobin, gelatin, ovalbumin, bovine serum albumin, or keratin within 15 s to 30 min. The high keratinolytic activity of this strain was confirmed through the degradation of chicken feathers, horns, hooves, wool, and cattle hide. Chicken feathers were hydrolyzed in 4 days, and the degrees of hydrolysis for cattle hide, wool, hoof, and horn after 7 days of cultivation were 97.2, 34.5, 29.6, and 3.6%, respectively. During submerged fermentation with feather medium in a laboratory bioreactor, the strain secreted enzymes with 249.20 ± 7.88 U/mL protease activity after 24 h. Thus, B. paralicheniformis T7 can be used to produce proteolytic and keratinolytic enzymes for application in processing proteinaceous raw materials and keratinous animal waste.
Collapse
Affiliation(s)
- Saniya Aktayeva
- National Center for Biotechnology, 13/5 Korgalzhyn Road, 010000, Astana, Kazakhstan
- Faculty of Natural Sciences, L.N. Gumilyev Eurasian National University, 2 Kanysh Satpayev Street, 010008, Astana, Kazakhstan
| | - Bekbolat Khassenov
- National Center for Biotechnology, 13/5 Korgalzhyn Road, 010000, Astana, Kazakhstan.
| |
Collapse
|
8
|
Shettar SS, Bagewadi ZK, Yunus Khan T, Mohamed Shamsudeen S, Kolvekar HN. Biochemical characterization of immobilized recombinant subtilisin and synthesis and functional characterization of recombinant subtilisin capped silver and zinc oxide nanoparticles. Saudi J Biol Sci 2024; 31:104009. [PMID: 38766505 PMCID: PMC11101740 DOI: 10.1016/j.sjbs.2024.104009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2024] [Revised: 04/27/2024] [Accepted: 05/03/2024] [Indexed: 05/22/2024] Open
Abstract
This pioneering research explores the transformative potential of recombinant subtilisin, emphasizing its strategic immobilization and nanoparticle synthesis to elevate both stability and therapeutic efficacy. Achieving an impressive 95.25 % immobilization yield with 3 % alginate composed of sodium along with 0.2 M CaCl2 indicates heightened pH levels and thermal resistance, with optimal action around pH 10 as well as 80 °C temperature. Notably, the Ca-alginate-immobilized subtilisin exhibits exceptional storage longevity and recyclability, affirming its practical viability. Comprehensive analyses of the recombinant subtilisin under diverse conditions underscore its adaptability, reflected in kinetic enhancements with increased Vmax (10.7 ± 15 × 103 U/mg) and decreased Km (0.19 ± 0.3 mM) values post-immobilization using N-Suc-F-A-A-F-pNA. UV-visible spectroscopy confirms the successful capping of nanoparticles made of Ag and ZnO by recombinant subtilisin, imparting profound antibacterial efficacy against diverse organisms and compelling antioxidant properties. Cytotoxicity was detected against the MCF-7 breast cancer line of cells, exhibiting IC50 concentrations at 8.87 as well as 14.52 µg/mL of AgNP as well as ZnONP, correspondingly, indicating promising anticancer potential. Rigorous characterization, including FTIR, SEM-EDS, TGA and AFM robustly validate the properties of the capped nanoparticles. Beyond therapeutic implications, the investigation explores industrial applications, revealing the versatility of recombinant subtilisin in dehairing, blood clot dissolution, biosurfactant activity, and blood stain removal. In summary, this research unfolds the exceptional promise of recombinant subtilisin and its nanoparticles, presenting compelling opportunities for diverse therapeutic applications in medicine. These findings contribute substantively to biotechnology and healthcare and stimulate avenues for further innovation and exploration.
Collapse
Affiliation(s)
- Shreya S. Shettar
- Department of Biotechnology, KLE Technological University, Hubballi, Karnataka 580031, India
| | - Zabin K. Bagewadi
- Department of Biotechnology, KLE Technological University, Hubballi, Karnataka 580031, India
| | - T.M. Yunus Khan
- Department of Mechanical Engineering, College of Engineering, King Khalid University, Abha 61421, Saudi Arabia
| | - Shaik Mohamed Shamsudeen
- Department of Diagnostic Dental Science and Oral Biology, College of Dentistry, King Khalid University, Abha 61421, Saudi Arabia
| | - Harsh N. Kolvekar
- Department of Biotechnology, KLE Technological University, Hubballi, Karnataka 580031, India
| |
Collapse
|
9
|
Allison SD, AdeelaYasid N, Shariff FM, Abdul Rahman N. Molecular Cloning, Characterization, and Application of Organic Solvent-Stable and Detergent-Compatible Thermostable Alkaline Protease from Geobacillus thermoglucosidasius SKF4. J Microbiol Biotechnol 2024; 34:436-456. [PMID: 38044750 PMCID: PMC10940756 DOI: 10.4014/jmb.2306.06050] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2023] [Revised: 10/12/2023] [Accepted: 10/30/2023] [Indexed: 12/05/2023]
Abstract
Several thermostable proteases have been identified, yet only a handful have undergone the processes of cloning, comprehensive characterization, and full exploitation in various industrial applications. Our primary aim in this study was to clone a thermostable alkaline protease from a thermophilic bacterium and assess its potential for use in various industries. The research involved the amplification of the SpSKF4 protease gene, a thermostable alkaline serine protease obtained from the Geobacillus thermoglucosidasius SKF4 bacterium through polymerase chain reaction (PCR). The purified recombinant SpSKF4 protease was characterized, followed by evaluation of its possible industrial applications. The analysis of the gene sequence revealed an open reading frame (ORF) consisting of 1,206 bp, coding for a protein containing 401 amino acids. The cloned gene was expressed in Escherichia coli. The molecular weight of the enzyme was measured at 28 kDa using sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE). The partially purified enzyme has its highest activity at a pH of 10 and a temperature of 80°C. In addition, the enzyme showed a half-life of 15 h at 80°C, and there was a 60% increase in its activity at 10 mM Ca2+ concentration. The activity of the protease was completely inhibited (100%) by phenylmethylsulfonyl fluoride (PMSF); however, the addition of sodium dodecyl sulfate (SDS) resulted in a 20% increase in activity. The enzyme was also stable in various organic solvents and in certain commercial detergents. Furthermore, the enzyme exhibited strong potential for industrial use, particularly as a detergent additive and for facilitating the recovery of silver from X-ray film.
Collapse
Affiliation(s)
- Suleiman D Allison
- Department of Food Science and Technology, Faculty of Agriculture and Agricultural Technology, Moddibo Adama University, Yola 640230, Nigeria
| | - Nur AdeelaYasid
- Department of Biochemistry, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra, Malaysia, 43400 Serdang Selangor, Malaysia
| | - Fairolniza Mohd Shariff
- Department of Microbiology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 Serdang Selangor, Malaysia
| | - Nor'Aini Abdul Rahman
- Department of Bioprocess Technology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra, Malaysia, 43400 Serdang Selangor, Malaysia
| |
Collapse
|
10
|
Yang Q, Liu S, Zhao Y, Han X, Chang R, Mao J. Enzymatic properties and inhibition tolerance analysis of key enzymes in β-phenylethanol anabolic pathway of Saccharomyces cerevisiae HJ. Synth Syst Biotechnol 2023; 8:772-783. [PMID: 38161995 PMCID: PMC10755794 DOI: 10.1016/j.synbio.2023.11.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2023] [Revised: 11/14/2023] [Accepted: 11/15/2023] [Indexed: 01/03/2024] Open
Abstract
Huangjiu is known for its unique aroma, primarily attributed to its high concentration of β-phenylethanol (ranging from 40 to 130 mg/L). Phenylalanine aminotransferase Aro9p and phenylpyruvate decarboxylase Aro10p are key enzymes in the β-phenylethanol synthetic pathway of Saccharomyces cerevisiae HJ. This study examined the enzymatic properties of these two enzymes derived from S. cerevisiae HJ and S288C. After substrate docking, Aro9pHJ (-24.05 kJ/mol) and Aro10pHJ (-14.33 kJ/mol) exhibited lower binding free energies compared to Aro9pS288C (-21.93 kJ/mol) and Aro10pS288C (-12.84 kJ/mol). ARO9 and ARO10 genes were heterologously expressed in E. coli BL21. Aro9p, which was purified via affinity chromatography, showed inhibition by l-phenylalanine (L-PHE), but the reaction rate Vmax(Aro9pHJ: 23.89 μmol·(min∙g)-1) > Aro9pS288C: 21.3 μmol·(min∙g)-1) and inhibition constant Ki values (Aro9pHJ: 0.28 mol L-1>Aro9pS288C 0.26 mol L-1) indicated that Aro9p from S. cerevisiae HJ was more tolerant to substrate stress during Huangjiu fermentation. In the presence of the same substrate phenylpyruvate (PPY), Aro10pHJ exhibited a stronger affinity than Aro10pS288C. Furthermore, Aro9pHJ and Aro10pHJ were slightly more tolerant to the final metabolites β-phenylethanol and ethanol, respectively, compared to those from S288C. The study suggests that the mutations in Aro9pHJ and Aro10pHJ may contribute to the increased β-phenylethanol concentration in Huangjiu. This is the first study investigating enzyme tolerance mechanisms in terms of substrate and product, providing a theoretical basis for the regulation of the β-phenylethanol metabolic pathway.
Collapse
Affiliation(s)
- Qilin Yang
- National Engineering Research Center of Cereal Fermentation and Food Biomanufacturing, State Key Laboratory of Food Science and Technology, School of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu, 214122, China
- Jiangsu Provincial Engineering Research Center for Bioactive Product Processing Technology, Jiangnan University, Wuxi, Jiangsu, 214122, China
| | - Shuangping Liu
- National Engineering Research Center of Cereal Fermentation and Food Biomanufacturing, State Key Laboratory of Food Science and Technology, School of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu, 214122, China
- Shaoxing Key Laboratory of Traditional Fermentation Food and Human Health, Jiangnan University (Shaoxing) Industrial Technology Research Institute, Shaoxing, Zhejiang, 312000, China
- National Engineering Research Center of Huangjiu, Zhejiang Guyuelongshan Shaoxing Wine Co., Ltd., Shaoxing, Zhejiang, 312000, China
- Jiangsu Provincial Engineering Research Center for Bioactive Product Processing Technology, Jiangnan University, Wuxi, Jiangsu, 214122, China
| | - Yuzong Zhao
- National Engineering Research Center of Cereal Fermentation and Food Biomanufacturing, State Key Laboratory of Food Science and Technology, School of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu, 214122, China
- Jiangsu Provincial Engineering Research Center for Bioactive Product Processing Technology, Jiangnan University, Wuxi, Jiangsu, 214122, China
| | - Xiao Han
- National Engineering Research Center of Cereal Fermentation and Food Biomanufacturing, State Key Laboratory of Food Science and Technology, School of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu, 214122, China
- Shaoxing Key Laboratory of Traditional Fermentation Food and Human Health, Jiangnan University (Shaoxing) Industrial Technology Research Institute, Shaoxing, Zhejiang, 312000, China
- National Engineering Research Center of Huangjiu, Zhejiang Guyuelongshan Shaoxing Wine Co., Ltd., Shaoxing, Zhejiang, 312000, China
- Jiangsu Provincial Engineering Research Center for Bioactive Product Processing Technology, Jiangnan University, Wuxi, Jiangsu, 214122, China
| | - Rui Chang
- National Engineering Research Center of Cereal Fermentation and Food Biomanufacturing, State Key Laboratory of Food Science and Technology, School of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu, 214122, China
- Jiangsu Provincial Engineering Research Center for Bioactive Product Processing Technology, Jiangnan University, Wuxi, Jiangsu, 214122, China
| | - Jian Mao
- National Engineering Research Center of Cereal Fermentation and Food Biomanufacturing, State Key Laboratory of Food Science and Technology, School of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu, 214122, China
- Shaoxing Key Laboratory of Traditional Fermentation Food and Human Health, Jiangnan University (Shaoxing) Industrial Technology Research Institute, Shaoxing, Zhejiang, 312000, China
- National Engineering Research Center of Huangjiu, Zhejiang Guyuelongshan Shaoxing Wine Co., Ltd., Shaoxing, Zhejiang, 312000, China
- Jiangsu Provincial Engineering Research Center for Bioactive Product Processing Technology, Jiangnan University, Wuxi, Jiangsu, 214122, China
| |
Collapse
|
11
|
Chen W, Li L, Ye C, Zhao Z, Huang K, Zou D, Wei X. Efficient production of extracellular alkaline protease in Bacillus amyloliquefaciens by host strain construction. Lebensm Wiss Technol 2022. [DOI: 10.1016/j.lwt.2022.113620] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
|
12
|
Sharma S, Kumar S, Kaur R, Kaur R. Multipotential Alkaline Protease From a Novel Pyxidicoccus sp. 252: Ecofriendly Replacement to Various Chemical Processes. Front Microbiol 2021; 12:722719. [PMID: 34707581 PMCID: PMC8542989 DOI: 10.3389/fmicb.2021.722719] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2021] [Accepted: 08/26/2021] [Indexed: 11/27/2022] Open
Abstract
A newly isolated alkaline protease-producing myxobacterium was isolated from soil. The strain was identified as Pyxidicoccus sp. S252 on the basis of 16S rRNA sequence analysis. The extracellular alkaline proteases produced by isolate S252 (PyCP) was optimally active in the pH range of 11.0–12.0 and temperature range of 40–50°C The zymogram of PyCP showed six caseinolytic protease bands. The proteases were stable in the pH range of 8.0–10.0 and temperature range of 40–50°C. The activity of PyCP was enhanced in the presence of Na+, Mg2+, Cu2+, Tween-20, and hydrogen peroxide (H2O2) (hydrogen peroxide), whereas in Triton X-100, glycerol, ethylenediaminetetraacetic acid (EDTA), and Co2+, it was stable. PyCP showed a potential in various applications. The addition of PyCP in the commercial detergent enhanced the wash performance of the detergent by efficiently removing the stains of tomato ketchup and coffee. PyCP efficiently hydrolyzed the gelatin layer on X-ray film to release the embedded silver. PyCP also showed potent dehairing of goat skin and also efficiently deproteinized sea shell waste indicating its application in chitin extraction. Thus, the results of the present study indicate that Pyxidicoccus sp. S252 proteases have the potential to be used as an ecofriendly replacement of chemicals in several industrial processes.
Collapse
Affiliation(s)
- Sonia Sharma
- Department of Biotechnology, Guru Nanak Dev University, Amritsar, India
| | - Shiv Kumar
- Department of Biotechnology, Guru Nanak Dev University, Amritsar, India
| | - Rajinder Kaur
- Department of Botanical and Environmental Sciences, Guru Nanak Dev University, Amritsar, India
| | - Ramandeep Kaur
- Department Cum National Centre for Human Genome Studies and Research, Panjab University, Chandigarh, India
| |
Collapse
|
13
|
Genome mining reveals the genes of carboxypeptidase for OTA-detoxification in Bacillus subtilis CW14. Int J Biol Macromol 2021; 186:800-810. [PMID: 34284053 DOI: 10.1016/j.ijbiomac.2021.07.085] [Citation(s) in RCA: 34] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2021] [Revised: 07/13/2021] [Accepted: 07/13/2021] [Indexed: 01/07/2023]
Abstract
Bacillus subtilis CW14, isolated from fresh elk droppings in Beijing Zoo, is a Gram-positive, conferred Generally Recognized as Safe (GRAS) bacterium with the capacity of ochratoxin A (OTA) detoxification. The genome sequence of the CW14 strain showed a size of 4,287,522 bp with 44.06% GC content. It was predicted many putative enzymes involved in degrading mycotoxin by analyzing the signal peptides and the transmembrane regions. Nine extracellular enzymes were predicted relating to OTA detoxification, including four D-Ala-D-Ala carboxypeptidases, two hydrolases, two amidases, and one lactamase. Indeed, two of the carboxypeptidase genes dacA and dacB, expressed in Escherichia coli, were verified contributing to OTA detoxification. DacA and OTA were mixed incubated for 24 h, and the degradation rate reached 71.3%. After purification, the concentration of recombinant DacA protein was 0.5 mg/mL. Bacillus subtilis CW14 and its carboxypeptidases may be used as OTA detoxification agents in food and feed industry production.
Collapse
|
14
|
Wang H, Cai C, Gan L, Wang S, Tian Y. Expression and Characterization of Surfactnt-Stable Calcium-Dependent Protease: a Potential Additive for Laundry Detergents. APPL BIOCHEM MICRO+ 2021. [DOI: 10.1134/s0003683821040165] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
|
15
|
Farooq S, Nazir R, Ganai SA, Ganai BA. Isolation and characterization of a new cold-active protease from psychrotrophic bacteria of Western Himalayan glacial soil. Sci Rep 2021; 11:12768. [PMID: 34140593 PMCID: PMC8211794 DOI: 10.1038/s41598-021-92197-w] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2021] [Accepted: 05/28/2021] [Indexed: 02/05/2023] Open
Abstract
As an approach to the exploration of cold-active enzymes, in this study, we isolated a cold-active protease produced by psychrotrophic bacteria from glacial soils of Thajwas Glacier, Himalayas. The isolated strain BO1, identified as Bacillus pumilus, grew well within a temperature range of 4-30 °C. After its qualitative and quantitative screening, the cold-active protease (Apr-BO1) was purified. The Apr-BO1 had a molecular mass of 38 kDa and showed maximum (37.02 U/mg) specific activity at 20 °C, with casein as substrate. It was stable and active between the temperature range of 5-35 °C and pH 6.0-12.0, with an optimum temperature of 20 °C at pH 9.0. The Apr-BO1 had low Km value of 1.0 mg/ml and Vmax 10.0 µmol/ml/min. Moreover, it displayed better tolerance to organic solvents, surfactants, metal ions and reducing agents than most alkaline proteases. The results exhibited that it effectively removed the stains even in a cold wash and could be considered a decent detergent additive. Furthermore, through protein modelling, the structure of this protease was generated from template, subtilisin E of Bacillus subtilis (PDB ID: 3WHI), and different methods checked its quality. For the first time, this study reported the protein sequence for psychrotrophic Apr-BO1 and brought forth its novelty among other cold-active proteases.
Collapse
Affiliation(s)
- Saleem Farooq
- grid.412997.00000 0001 2294 5433Department of Environmental Science, University of Kashmir, Srinagar, Jammu and Kashmir 190006 India ,grid.412997.00000 0001 2294 5433Microbiology Research Laboratory, Centre of Research for Development (CORD), University of Kashmir, Hazratbal, Srinagar, India Jammu and Kashmir 190006
| | - Ruqeya Nazir
- grid.412997.00000 0001 2294 5433Microbiology Research Laboratory, Centre of Research for Development (CORD), University of Kashmir, Hazratbal, Srinagar, India Jammu and Kashmir 190006
| | - Shabir Ahmad Ganai
- grid.444725.40000 0004 0500 6225Division of Basic Sciences and Humanities, FoA, SKUAST-Kashmir, Srinagar, Jammu and Kashmir 193201 India
| | - Bashir Ahmad Ganai
- grid.412997.00000 0001 2294 5433Microbiology Research Laboratory, Centre of Research for Development (CORD), University of Kashmir, Hazratbal, Srinagar, India Jammu and Kashmir 190006
| |
Collapse
|
16
|
Gurunathan R, Huang B, Ponnusamy VK, Hwang JS, Dahms HU. Novel recombinant keratin degrading subtilisin like serine alkaline protease from Bacillus cereus isolated from marine hydrothermal vent crabs. Sci Rep 2021; 11:12007. [PMID: 34099743 PMCID: PMC8185006 DOI: 10.1038/s41598-021-90375-4] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2020] [Accepted: 04/20/2021] [Indexed: 11/25/2022] Open
Abstract
Microbial secondary metabolites from extreme environments like hydrothermal vents are a promising source for industrial applications. In our study the protease gene from Bacillus cereus obtained from shallow marine hydrothermal vents in the East China Sea was cloned, expressed and purified. The protein sequence of 38 kDa protease SLSP-k was retrieved from mass spectrometry and identified as a subtilisin serine proteinase. The novel SLSP-k is a monomeric protein with 38 amino acid signal peptides being active over wide pH (7-11) and temperature (40-80 °C) ranges, with maximal hydrolytic activities at pH 10 and at 50 °C temperature. The hydrolytic activity is stimulated by Ca2+, Co2+, Mn2+, and DTT. It is inhibited by Fe2+, Cd2+, Cu2+, EDTA, and PMSF. The SLSP-k is stable in anionic, non-anionic detergents, and solvents. The ability to degrade keratin in chicken feather and hair indicates that this enzyme is suitable for the degradation of poultry waste without the loss of nutritionally essential amino acids which otherwise are lost in hydrothermal processing. Therefore, the proteinase is efficient in environmental friendly bioconversion of animal waste into fertilizers or value added products such as secondary animal feedstuffs.
Collapse
Affiliation(s)
- Revathi Gurunathan
- Department of Medicinal and Applied Chemistry, Kaohsiung Medical University, Kaohsiung City, 807, Taiwan
- Department of Biomedical Science and Environmental Biology, Kaohsiung Medical University, Kaohsiung City, 807, Taiwan
| | - Bin Huang
- Department of Biomedical Science and Environmental Biology, Kaohsiung Medical University, Kaohsiung City, 807, Taiwan
- Regenerative Medicine and Cell Therapy Research Center, Kaohsiung Medical University, Kaohsiung City, 80708, Taiwan
| | - Vinoth Kumar Ponnusamy
- Department of Medicinal and Applied Chemistry, Kaohsiung Medical University, Kaohsiung City, 807, Taiwan
- Research Center for Environmental Medicine, Kaohsiung Medical University, Kaohsiung City, 807, Taiwan
| | - Jiang-Shiou Hwang
- Institute of Marine Biology, National Taiwan Ocean University, Keelung, 20224, Taiwan.
- Center of Excellence for Ocean Engineering, National Taiwan Ocean University, Keelung, 20224, Taiwan.
- Center of Excellence for the Oceans, National Taiwan Ocean University, Keelung, 20224, Taiwan.
| | - Hans-Uwe Dahms
- Department of Biomedical Science and Environmental Biology, Kaohsiung Medical University, Kaohsiung City, 807, Taiwan.
- Research Center for Environmental Medicine, Kaohsiung Medical University, Kaohsiung City, 807, Taiwan.
- Department of Marine Biotechnology and Resources, National Sun Yat-Sen University, Kaohsiung City, 804, Taiwan.
| |
Collapse
|
17
|
Zhang J, Wu X, Zhang X, Pan H, Shearer JES, Zhang H, Sun F. Zn 2+-dependent enhancement of Atrazine biodegradation by Klebsiella variicola FH-1. JOURNAL OF HAZARDOUS MATERIALS 2021; 411:125112. [PMID: 33858092 DOI: 10.1016/j.jhazmat.2021.125112] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2020] [Revised: 01/04/2021] [Accepted: 01/08/2021] [Indexed: 06/12/2023]
Abstract
Degradation efficiency of Atrazine by Klebsiella variicola FH-1 is improved by the addition of Zn2+. Both the chromosome and plasmid genomes of strain FH-1 were sequenced and annotated to identify genes involved in the degradation of Atrazine. Four open reading frames (ORFs) 1040, 2582, 3597, and 4043 encoding Zn2+-dependent hydrolases were knocked out to verify their predicted functions in the degradation of Atrazine. In the presence of Zn2+, the biodegradation efficiency of Atrazine by knockout mutant ∆ORF 3597 was 13.7% lower than that of wild type (WT) of strain FH-1 but still 9.4% higher than that of WT without Zn2+. These results indicated that ORF 3597 played a synergistic role but may not be the sole factor involved in the degradation of Atrazine. The enzymatic activities of pydC encoded by ORF 3597 were further characterized in the degradation of Atrazine. Results of fluorescence staining and flow cytometry analyses showed that the survival of bacterial cells and cell membrane permeability were increased in the presence of Zn2+ at different concentrations. Our study provided a scientific foundation for further investigation of the biological mechanisms of improving the degradation of Atrazine by strain FH-1 with the presence of Zn2+.
Collapse
Affiliation(s)
- Jinpeng Zhang
- College of Plant Protection, Jilin Agricultural University, Changchun 130118, PR China.
| | - Xian Wu
- Institute of Plant Protection, Jilin Academy of Agricultural Sciences, Gongzhuling 136100, PR China.
| | - Xianghui Zhang
- College of Plant Sciences, Jilin University, Changchun 130062, PR China.
| | - Hongyu Pan
- College of Plant Sciences, Jilin University, Changchun 130062, PR China.
| | - Julia E S Shearer
- School of Science and Technology, Georgia Gwinnett College, Lawrenceville, GA 30043, USA.
| | - Hao Zhang
- College of Plant Protection, Jilin Agricultural University, Changchun 130118, PR China.
| | - Fengjie Sun
- School of Science and Technology, Georgia Gwinnett College, Lawrenceville, GA 30043, USA.
| |
Collapse
|
18
|
Ren R, Zhai L, Tian Q, Meng D, Guan Z, Cai Y, Liao X. Identification of a novel glycerophosphodiester phosphodiesterase from Bacillus altitudinis W3 and its application in degradation of diphenyl phosphate. 3 Biotech 2021; 11:161. [PMID: 33758739 DOI: 10.1007/s13205-021-02704-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2020] [Accepted: 02/23/2021] [Indexed: 12/31/2022] Open
Abstract
Diphenyl phosphate (DPHP) has been increasingly detected in environmental samples, posing a potential hazard to humans and other organisms and arousing concern regarding its adverse effects. Biological degradation of DPHP is considered a promising and environmentally friendly method for its removal. In this study, the bagdpd gene was mined from the Bacillus altitudinis W3 genome and identified as a glycerophosphodiester phosphodiesterase by bioinformatics analysis. The enzyme was expressed and its biochemical properties were studied. When using bis(4-nitrophenyl) phosphate as substrate, enzyme activity was optimal at 55 °C and a pH of 8.5. The enzyme remained stable in the pH range of 8.0 - 10.0. The rBaGDPD enzyme degraded DPHP and the reaction product was identified as phenyl phosphate by LC-MS. This is the first report of a glycerophosphodiester phosphodiesterase exhibiting hydrolytic activity against DPHP. This study demonstrated that rBaGDPD could have the potential for bioremediation and industrial applications.
Collapse
Affiliation(s)
- Runxian Ren
- The Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, 1800 Lihu Road, Wuxi, 214122 Jiangsu China
| | - Lixin Zhai
- The Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, 1800 Lihu Road, Wuxi, 214122 Jiangsu China
| | - Qiaopeng Tian
- The Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, 1800 Lihu Road, Wuxi, 214122 Jiangsu China
| | - Di Meng
- The Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, 1800 Lihu Road, Wuxi, 214122 Jiangsu China
| | - Zhengbin Guan
- The Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, 1800 Lihu Road, Wuxi, 214122 Jiangsu China
| | - Yujie Cai
- The Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, 1800 Lihu Road, Wuxi, 214122 Jiangsu China
| | - Xiangru Liao
- The Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, 1800 Lihu Road, Wuxi, 214122 Jiangsu China
| |
Collapse
|
19
|
Identification of a Novel Thermostable Alkaline Protease from Bacillus megaterium-TK1 for the Detergent and Leather Industry. BIOLOGY 2020; 9:biology9120472. [PMID: 33339223 PMCID: PMC7765983 DOI: 10.3390/biology9120472] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/15/2020] [Revised: 12/11/2020] [Accepted: 12/14/2020] [Indexed: 12/17/2022]
Abstract
Simple Summary In the current investigation, we describe the characteristic features of a novel Bacillus megaterium bacterium-derived protease with excellent thermostable enzyme activity under stringent alkaline conditions. The protease is highly compatible with various detergents and thus appears to be an eco-friendly additive for a variety of industrial applications. Abstract An increased need by the green industry for enzymes that can be exploited for eco-friendly industrial applications led us to isolate and identify a unique protease obtained from a proteolytic Bacillus megaterium-TK1 strain from a seawater source. The extracellular thermostable serine protease was processed by multiple chromatography steps. The isolated protease displayed a relative molecular weight (MW) of 33 kDa (confirmed by zymography), optimal enzyme performance at pH 8.0, and maximum enzyme performance at 70 °C with 100% substrate specificity towards casein. The proteolytic action was blocked by phenylmethylsulfonyl fluoride (PMSF), a serine hydrolase inactivator. Protease performance was augmented by several bivalent metal cations. The protease tolerance was studied under stringent conditions with different industrial dispersants and found to be stable with Surf Excel, Tide, or Rin detergents. Moreover, this protease could clean blood-stained fabrics and showed dehairing activity for cow skin with significantly reduced pollution loads. Our results suggest that this serine protease is a promising additive for various eco-friendly usages in both the detergent and leather industries.
Collapse
|
20
|
Ouelhadj A, Bouacem K, Asmani KL, Allala F, Mechri S, Yahiaoui M, Jaouadi B. Identification and homology modeling of a new biotechnologically compatible serine alkaline protease from moderately halotolerant Gracilibacillus boraciitolerans strain LO15. Int J Biol Macromol 2020; 161:1456-1469. [DOI: 10.1016/j.ijbiomac.2020.07.266] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2020] [Revised: 06/28/2020] [Accepted: 07/20/2020] [Indexed: 02/07/2023]
|
21
|
Pathak AP, Rathod MG, Mahabole MP, Khairnar RS. Enhanced catalytic activity of Bacillus aryabhattai P1 protease by modulation with nanoactivator. Heliyon 2020; 6:e04053. [PMID: 32529068 PMCID: PMC7276444 DOI: 10.1016/j.heliyon.2020.e04053] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2020] [Revised: 03/26/2020] [Accepted: 05/19/2020] [Indexed: 11/24/2022] Open
Abstract
In the developing area of modern nanobiotechnology, the research is being focused on enhancement of catalytic performance in terms of efficiency and stability of enzymes to fulfill the industrial demand. In the context of this interdisciplinary era, we isolated and identified alkaline protease producer Bacillus aryabhattai P1 by polyphasic approach and then followed one variable at a time approach to optimize protease production from P1. The modified components of fermentation medium (g/L) were wheat bran 10, soybean flour 10, yeast extract 5, NaCl 10, KH2PO4 1, K2HPO4 1 and MgSO4·7H2O 0.2 (pH 9). The optimum alkaline protease production from P1 was recorded 75 ± 3 U/mg at 35 °C and pH 9 after 96 h of fermentation period. Molecular weight of partially purified P1 alkaline protease was 26 KDa as revealed by SDS-PAGE. Calcium based nanoceramic material was prepared by wet chemical precipitation method and doped in native P1 protease for catalytic activity enhancement. Catalytic activity of modified P1 protease was attained by nanoactivator mediated modulation was more by 5.58 fold at pH 10 and 30 °C temperature. The nanoceramic material named as nanoactivator, with grain size of 40–60 nm was suitable to redesign the active site of P1 protease. Such types of modified proteases can be used in different nanobiotechnological applications.
Collapse
Affiliation(s)
- Anupama P Pathak
- School of Life Sciences (DST-FIST Phase-I & UGC-SAP DRS-II Sponsored School), Swami Ramanand Teerth Marathwada University, Nanded 431606, Maharashtra, India
| | - Mukundraj G Rathod
- Department of Biotechnology & Bioinformatics (U.G. & P.G.), Yeshwant College of Information Technology (BT & BI) Parbhani (affiliated to S.R.T.M. University, Nanded), Maharashtra, India
| | - Megha P Mahabole
- School of Physical Sciences, Swami Ramanand Teerth Marathwada University, Nanded 431606, Maharashtra, India
| | - Rajendra S Khairnar
- School of Physical Sciences, Swami Ramanand Teerth Marathwada University, Nanded 431606, Maharashtra, India
| |
Collapse
|