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Heidler von Heilborn D, Reinmüller J, Yurkov A, Stehle P, Moeller R, Lipski A. Fungi under Modified Atmosphere-The Effects of CO 2 Stress on Cell Membranes and Description of New Yeast Stenotrophomyces fumitolerans gen. nov., sp. nov. J Fungi (Basel) 2023; 9:1031. [PMID: 37888287 PMCID: PMC10607650 DOI: 10.3390/jof9101031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2023] [Revised: 10/12/2023] [Accepted: 10/14/2023] [Indexed: 10/28/2023] Open
Abstract
High levels of carbon dioxide are known to inhibit the growth of microorganisms. A total of twenty strains of filamentous fungi and yeasts were isolated from habitats with enriched carbon dioxide concentration. Most strains were derived from modified atmosphere packed (MAP) food products or mofettes and were cultivated under an atmosphere of 20% CO2 and 80% O2. The influence of CO2 on fungal cell membrane fatty acid profiles was examined in this study. Major changes were the increase in linolenic acid (C18:3 cis 9, 12, 15) and, additionally in most strains, linoleic acid (C18:2 cis 9, 12) with a maximum of 24.8%, at the expense of oleic (C18:1 cis 9), palmitic (C16:0), palmitoleic (C16:1 cis 9) and stearic acid (C18:0). The degree of fatty acid unsaturation increased for all of the strains in the study, which consequently led to lower melting temperatures of the cell membranes after incubation with elevated levels of CO2, indicating fluidization of the membrane and a potential membrane malfunction. Growth was reduced in 18 out of 20 strains in laboratory experiments and a change in pigmentation was observed in several strains. Two of the isolated strains, strain WT5 and strain WR1, were found to represent a hitherto undescribed yeast for which the new genus and species Stenotrophomyces fumitolerans (MB# 849906) is proposed.
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Affiliation(s)
- David Heidler von Heilborn
- Institute of Nutritional and Food Science, Food Microbiology and Hygiene, University of Bonn, Friedrich-Hirzebruch-Allee 7, 53115 Bonn, Germany; (D.H.v.H.)
| | - Jessica Reinmüller
- Institute of Nutritional and Food Science, Food Microbiology and Hygiene, University of Bonn, Friedrich-Hirzebruch-Allee 7, 53115 Bonn, Germany; (D.H.v.H.)
| | - Andrey Yurkov
- Leibniz Institute DSMZ—German Collection of Microorganisms and Cell Cultures, Department of Bioresources for Bioeconomy and Health Research, Inhoffenstraße 7 B, 38124 Braunschweig, Germany;
| | - Peter Stehle
- Institute of Nutritional and Food Science, Nutritional Physiology, University of Bonn, Nussallee 9, 53115 Bonn, Germany;
| | - Ralf Moeller
- Aerospace Microbiology Research Group, Institute of Aerospace Medicine, German Aerospace Center, 51147 Cologne, Germany;
| | - André Lipski
- Institute of Nutritional and Food Science, Food Microbiology and Hygiene, University of Bonn, Friedrich-Hirzebruch-Allee 7, 53115 Bonn, Germany; (D.H.v.H.)
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2
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Zheng Y, Liu G, Wu Q, Tan M, Xue J, Zhang R, Chen D, Xiao Y, Lv M, Liao M, Qu S, Liang W. Development of specific and rapid detection of human DNA by recombinase polymerase amplification assay for forensic analysis. Forensic Sci Int Genet 2023; 66:102903. [PMID: 37290252 DOI: 10.1016/j.fsigen.2023.102903] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2023] [Revised: 05/08/2023] [Accepted: 06/02/2023] [Indexed: 06/10/2023]
Abstract
The determination of human-derived samples is very important in forensic investigations and case investigation in order to determine vital information on the suspect and the case. In this study, we established a recombinase polymerase amplification (RPA) assay for rapid identification of human-derived components. The sensitivity of the assay was 0.003125 ng, with excellent species specificity, and human-derived DNA could be detected in the presence of non-human-derived components at a ratio of 1:1000. Moreover, the RPA assay had a strong tolerance to inhibitors, in the presence of 800 ng/μL humic acid, 400 ng/μL tannic acid, and 8000 ng/μL collagen. In forensic investigation, common body fluids (blood, saliva, semen, vaginal secretions) are all applicable, and the presence of DNA can be detected from samples after simple alkaline lysis, which greatly shortens the detection time. Four simulation and case samples (aged bones, aged bloodstains, hair, touch DNA) were also successfully applied. The above research results show that the RPA assay constructed in this study can be fully applied to forensic medicine to provide high sensitivity and applicability detection methods.
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Affiliation(s)
- Yazi Zheng
- Department of Forensic Genetics, West China School of Basic Medical Sciences and Forensic Medicine, Sichuan University, Chengdu, Sichuan, China
| | - Guihong Liu
- Department of Forensic Genetics, West China School of Basic Medical Sciences and Forensic Medicine, Sichuan University, Chengdu, Sichuan, China
| | - Qiushuo Wu
- Department of Forensic Genetics, West China School of Basic Medical Sciences and Forensic Medicine, Sichuan University, Chengdu, Sichuan, China
| | - Mengyu Tan
- Department of Forensic Genetics, West China School of Basic Medical Sciences and Forensic Medicine, Sichuan University, Chengdu, Sichuan, China
| | - Jiaming Xue
- Department of Forensic Genetics, West China School of Basic Medical Sciences and Forensic Medicine, Sichuan University, Chengdu, Sichuan, China
| | - Ranran Zhang
- Department of Forensic Genetics, West China School of Basic Medical Sciences and Forensic Medicine, Sichuan University, Chengdu, Sichuan, China
| | - Dezhi Chen
- Department of Forensic Genetics, West China School of Basic Medical Sciences and Forensic Medicine, Sichuan University, Chengdu, Sichuan, China
| | - Yuanyuan Xiao
- Department of Forensic Genetics, West China School of Basic Medical Sciences and Forensic Medicine, Sichuan University, Chengdu, Sichuan, China
| | - Meili Lv
- Department of Immunology, West China School of Basic Medical Sciences and Forensic Medicine, Sichuan University, Chengdu, Sichuan, China
| | - Miao Liao
- Department of Forensic Genetics, West China School of Basic Medical Sciences and Forensic Medicine, Sichuan University, Chengdu, Sichuan, China
| | - Shengqiu Qu
- Department of Forensic Genetics, West China School of Basic Medical Sciences and Forensic Medicine, Sichuan University, Chengdu, Sichuan, China.
| | - Weibo Liang
- Department of Forensic Genetics, West China School of Basic Medical Sciences and Forensic Medicine, Sichuan University, Chengdu, Sichuan, China.
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Combined impacts of various plant derivative extracts and lactic acid bacteria on yeasts to develop a nutritional bar with antifungal properties. FOOD BIOSCI 2022. [DOI: 10.1016/j.fbio.2022.101718] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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4
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Yeasts Inhabiting Extreme Environments and Their Biotechnological Applications. Microorganisms 2022; 10:microorganisms10040794. [PMID: 35456844 PMCID: PMC9028089 DOI: 10.3390/microorganisms10040794] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2022] [Revised: 04/06/2022] [Accepted: 04/06/2022] [Indexed: 11/17/2022] Open
Abstract
Yeasts are microscopic fungi inhabiting all Earth environments, including those inhospitable for most life forms, considered extreme environments. According to their habitats, yeasts could be extremotolerant or extremophiles. Some are polyextremophiles, depending on their growth capacity, tolerance, and survival in the face of their habitat’s physical and chemical constitution. The extreme yeasts are relevant for the industrial production of value-added compounds, such as biofuels, lipids, carotenoids, recombinant proteins, enzymes, among others. This review calls attention to the importance of yeasts inhabiting extreme environments, including metabolic and adaptive aspects to tolerate conditions of cold, heat, water availability, pH, salinity, osmolarity, UV radiation, and metal toxicity, which are relevant for biotechnological applications. We explore the habitats of extreme yeasts, highlighting key species, physiology, adaptations, and molecular identification. Finally, we summarize several findings related to the industrially-important extremophilic yeasts and describe current trends in biotechnological applications that will impact the bioeconomy.
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Li YY, Wang MM, Groenewald M, Li AH, Guo YT, Wu F, Zhang BQ, Tanaka E, Wang QM, Bai FY, Begerow D. Proposal of Two New Combinations, Twenty New Species, Four New Genera, One New Family, and One New Order for the Anamorphic Basidiomycetous Yeast Species in Ustilaginomycotina. Front Microbiol 2022; 12:777338. [PMID: 35222295 PMCID: PMC8880017 DOI: 10.3389/fmicb.2021.777338] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2021] [Accepted: 11/26/2021] [Indexed: 12/02/2022] Open
Abstract
Two hundred and forty-four ustilaginomycetous yeast or yeast-like strains were isolated from the soil, skin of animals or humans and plant materials during the past 20 years. Among them, 203 strains represent 39 known species, whereas 41 strains represent several novel species based on the sequence analyses of the rDNA genes [18S rDNA, Internal Transcribed Spacer (ITS) regions, 26S rDNA D1/D2 domain] and three protein genes (RPB1, RPB2, and TEF1). In this study, one new order, one new family, four new genera, twenty new species, and two new combinations were proposed. They are Franziozymales ord. nov., Franziozymaceae fam. nov., Baueromyces gen. nov., Franziozyma gen. nov., Guomyces gen. nov., Yunzhangomyces gen. nov., Baueromyces planticola sp. nov., Franziozyma bambusicola sp. nov., Gjaerumia cyclobalanopsidis sp. nov., Gjaerumia pseudominor sp. nov., Jamesdicksonia aceris sp. nov., Jaminaea lantanae sp. nov., Kalmanozyma hebeiensis sp. nov., Langdonia ligulariae sp. nov., Meira hainanensis sp. nov., Meira pileae sp. nov., Meira plantarum sp. nov., Phragmotaenium parafulvescens sp. nov., Sporisorium cylindricum sp. nov., Sympodiomycopsis europaea sp. nov., Tilletiopsis lunata sp. nov., Tilletiopsis pinicola sp. nov., Yunzhangomyces clavatus sp. nov., Yunzhangomyces cylindricus sp. nov., Yunzhangomyces qinlingensis sp. nov., Yunzhangomyces orchidis sp. nov., Guomyces nicotianae comb. nov., and Yunzhangomces scirpi comb. nov.
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Affiliation(s)
- Yao-Yao Li
- Engineering Laboratory of Microbial Breeding and Preservation of Hebei Province, School of Life Sciences, Institute of Life Sciences and Green Development, Hebei University, Baoding, China
| | - Man-Man Wang
- Engineering Laboratory of Microbial Breeding and Preservation of Hebei Province, School of Life Sciences, Institute of Life Sciences and Green Development, Hebei University, Baoding, China
| | | | - Ai-Hua Li
- China General Microbiological Culture Collection Center and State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
| | - Yun-Tong Guo
- Engineering Laboratory of Microbial Breeding and Preservation of Hebei Province, School of Life Sciences, Institute of Life Sciences and Green Development, Hebei University, Baoding, China
| | - Feng Wu
- Engineering Laboratory of Microbial Breeding and Preservation of Hebei Province, School of Life Sciences, Institute of Life Sciences and Green Development, Hebei University, Baoding, China
| | - Bing-Qian Zhang
- Engineering Laboratory of Microbial Breeding and Preservation of Hebei Province, School of Life Sciences, Institute of Life Sciences and Green Development, Hebei University, Baoding, China
| | - Eiji Tanaka
- Department of Environmental Science, Ishikawa Prefectural University, Nonoichi, Japan
| | - Qi-Ming Wang
- Engineering Laboratory of Microbial Breeding and Preservation of Hebei Province, School of Life Sciences, Institute of Life Sciences and Green Development, Hebei University, Baoding, China
| | - Feng-Yan Bai
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
| | - Dominik Begerow
- Department of Evolution of Plants and Fungi, Ruhr-Universität Bochum, Bochum, Germany
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Regassa H, Bose D, Mukherjee A. Review of Microorganisms and Their Enzymatic Products for Industrial Bioprocesses. Ind Biotechnol (New Rochelle N Y) 2021. [DOI: 10.1089/ind.2021.0002] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023] Open
Affiliation(s)
- Hailemeleak Regassa
- Faculty of Applied Sciences & Biotechnology, Shoolini University of Biotechnology & Management Sciences, Solan, Himachal Pradesh, India
| | - Debajyoti Bose
- Faculty of Applied Sciences & Biotechnology, Shoolini University of Biotechnology & Management Sciences, Solan, Himachal Pradesh, India
| | - Alivia Mukherjee
- Department of Chemical and Biological Engineering, University of Saskatchewan, Saskatoon, SK, Canada
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Yeasts and Lactic Acid Bacteria for Panettone Production: An Assessment of Candidate Strains. Microorganisms 2021; 9:microorganisms9051093. [PMID: 34069676 PMCID: PMC8160612 DOI: 10.3390/microorganisms9051093] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2021] [Revised: 05/18/2021] [Accepted: 05/18/2021] [Indexed: 12/15/2022] Open
Abstract
The recovery of yeasts and lactic acid bacteria (LAB) involved in sourdough fermentation is the first step in the selection of starters with suitable technological aptitude and capable of producing desired aromas and/or aromatic precursors. In this work, two sourdoughs samples (MA and MB) and the derived doughs (samples A and B) were collected from a bakery during artisanal Panettone manufacture. Yeasts and bacteria were isolated at different fermentation steps on selective agar media. A total of 77 isolates were obtained and characterized. Representative strains of yeasts and LAB were identified by sequencing the D1/D2 domain of the 26S rRNA and the 16S rRNA genes, respectively. Moreover, the volatile organic compounds (VOCs) produced in the collected samples were detected and correlated to the species found in the same samples. The results highlighted the occurrence of Kazachstania humilis in both samples A and B, while Saccharomyces cerevisiae strains were detected only in samples B. Among LAB, Fructilactobacillus sanfranciscensis was the main species detected in both sourdoughs. Furthermore, strains belonging to the species Lactiplantibacillus plantarum, Furfurilactobacillus rossiae, Lactobacillus parabuchneri, Leuconostoc citreum, and Leuconostoc mesenteroides were assessed in the dough samples.
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Zhang J, Plowman JE, Tian B, Clerens S, On SLW. Application of MALDI-TOF analysis to reveal diversity and dynamics of winemaking yeast species in wild-fermented, organically produced, New Zealand Pinot Noir wine. Food Microbiol 2021; 99:103824. [PMID: 34119109 DOI: 10.1016/j.fm.2021.103824] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2020] [Revised: 04/29/2021] [Accepted: 05/03/2021] [Indexed: 02/06/2023]
Abstract
Rapid yeast identification is of particular importance in monitoring wine fermentation and assessing strain application in winemaking. We used MALDI-TOF MS analysis supported by 26 S rRNA gene sequence analysis and Saccharomyces-specific PCR testing to differentiate reference and field strains recovered from organic wine production facilities in Waipara, New Zealand, in which Pinot Noir wine was produced by spontaneous fermentations in the vineyard and in the winery. Strains were isolated from each of four key stages of each ferment to evaluate changes in taxonomic diversity. MALDI-TOF MS analysis was confirmed as an excellent yeast identification method, with even closely related Saccharomyces species readily distinguished. A total of 13 indigenous species belonging to eight genera were identified from Pinot Noir ferments, with taxonomic diversity generally reducing as fermentation progressed. However, differences between the taxa recovered were observed between the vineyard and winery ferments, despite the grapes used being from the same batch. Furthermore, some consistent proteomic differences between strains of S. cerevisiae, Hanseniasporum uvarum, Candida californica, Pichia membranifaciens and Starmerella bacillaris correlated with the different fermentation systems used. The high speed, low cost, taxonomic resolution and ability to characterise subtle changes in phenotype that may result from variations in environmental conditions makes MALDI-TOF analysis an attractive tool for further and wider applications in the wine industry. Such applications may include monitoring wine fermentation to actively support the consistency of high-quality wine products, and potentially for the development of such products too.
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Affiliation(s)
- Junwen Zhang
- Department of Wine, Food and Molecular Biosciences, Lincoln University, PO Box 85054, Lincoln, New Zealand
| | | | - Bin Tian
- Department of Wine, Food and Molecular Biosciences, Lincoln University, PO Box 85054, Lincoln, New Zealand
| | - Stefan Clerens
- AgResearch Ltd, Lincoln Research Centre, Lincoln, New Zealand; Biomolecular Interaction Centre, University of Canterbury, Christchurch, New Zealand; Riddet Institute, Massey University, Palmerston North, New Zealand
| | - Stephen L W On
- Department of Wine, Food and Molecular Biosciences, Lincoln University, PO Box 85054, Lincoln, New Zealand.
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9
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Colabella C, Casagrande Pierantoni D, Corte L, Roscini L, Conti A, Bassetti M, Tascini C, Robert V, Cardinali G. Single Strain High-Depth NGS Reveals High rDNA (ITS-LSU) Variability in the Four Prevalent Pathogenic Species of the Genus Candida. Microorganisms 2021; 9:microorganisms9020302. [PMID: 33540602 PMCID: PMC7912828 DOI: 10.3390/microorganisms9020302] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2020] [Revised: 01/27/2021] [Accepted: 01/29/2021] [Indexed: 01/08/2023] Open
Abstract
Ribosomal RNA in fungi is encoded by a series of genes and spacers included in a large operon present in 100 tandem repeats, normally in a single locus. The multigene nature of this locus was somehow masked by Sanger sequencing, which produces a single sequence reporting the prevalent nucleotide of each site. The introduction of next generation sequencing led to deeper knowledge of the individual sequences (reads) and therefore of the variants between the same DNA sequences located in different tandem repeats. In this framework, NGS sequencing of the rDNA region was used to elucidate the extent of intra- and inter-genomic variation at both the strain and species level. Specifically, the use of an innovative NGS technique allowed the high-throughput high-depth sequencing of the ITS1-LSU D1/D2 amplicons of 252 strains belonging to four opportunistic yeast species of the genus Candida. Results showed the presence of a large extent of variability among strains and species. These variants were differently distributed throughout the analyzed regions with a higher concentration within the Internally Transcribed Spacer (ITS) region, suggesting that concerted evolution was not able to totally homogenize these sequences. Both the internal variability and the SNPs between strain can be used for a deep typing of the strains and to study their ecology.
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Affiliation(s)
- Claudia Colabella
- Department of Pharmaceutical Sciences, University of Perugia, 06121 Perugia, Italy; (C.C.); (D.C.P.); (L.C.); (L.R.); (A.C.)
- Istituto Zooprofilattico Sperimentale dell’Umbria e delle Marche “Togo Rosati”, 06126 Perugia, Italy
| | - Debora Casagrande Pierantoni
- Department of Pharmaceutical Sciences, University of Perugia, 06121 Perugia, Italy; (C.C.); (D.C.P.); (L.C.); (L.R.); (A.C.)
| | - Laura Corte
- Department of Pharmaceutical Sciences, University of Perugia, 06121 Perugia, Italy; (C.C.); (D.C.P.); (L.C.); (L.R.); (A.C.)
| | - Luca Roscini
- Department of Pharmaceutical Sciences, University of Perugia, 06121 Perugia, Italy; (C.C.); (D.C.P.); (L.C.); (L.R.); (A.C.)
| | - Angela Conti
- Department of Pharmaceutical Sciences, University of Perugia, 06121 Perugia, Italy; (C.C.); (D.C.P.); (L.C.); (L.R.); (A.C.)
| | - Matteo Bassetti
- Department Science and Health, University of Genoa and Genoa Hospital, 16100 Genova, Italy;
| | - Carlo Tascini
- Department of Medical Art, University of Udine and Udine Hospital, 33100 Udine, Italy;
| | - Vincent Robert
- Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands;
| | - Gianluigi Cardinali
- Department of Pharmaceutical Sciences, University of Perugia, 06121 Perugia, Italy; (C.C.); (D.C.P.); (L.C.); (L.R.); (A.C.)
- CEMIN Excellence Research Centre, University of Perugia, 06123 Perugia, Italy
- Correspondence: ; Tel.: +39-075-585-6484
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Shinohara Y, Kurniawan YN, Sakai H, Magarifuchi T, Suzuki K. Nanopore based sequencing enables easy and accurate identification of yeasts in breweries. JOURNAL OF THE INSTITUTE OF BREWING 2021. [DOI: 10.1002/jib.639] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Yuji Shinohara
- Analytical Science Laboratories Asahi Quality and Innovations, Ltd., Moriya Ibaraki Japan
| | - Yohanes Novi Kurniawan
- Analytical Science Laboratories Asahi Quality and Innovations, Ltd., Moriya Ibaraki Japan
| | - Hiroaki Sakai
- Analytical Science Laboratories Asahi Quality and Innovations, Ltd., Moriya Ibaraki Japan
| | - Tetsuro Magarifuchi
- Analytical Science Laboratories Asahi Quality and Innovations, Ltd., Moriya Ibaraki Japan
| | - Koji Suzuki
- Asahi Quality and Innovations, Ltd., Moriya Ibaraki Japan
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11
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Wang GS, Zhou Y, Xue L, Li AH, Wangmu, Wang QM. Teunia rosae sp. nov. and Teunia rudbeckiae sp. nov. (Cryptococcaceae, Tremellales), two novel basidiomycetous yeast species isolated from flowers. Int J Syst Evol Microbiol 2020; 70:5394-5400. [PMID: 33275546 DOI: 10.1099/ijsem.0.004423] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Three yeast strains isolated from three flower samples were identified as representing two novel species of Teunia based on molecular phylogenetic analysis and phenotypic comparisons. Strains 12A8 and 21S4 with pink cream colonies and subglobose to globose cells had identical sequences in the ITS and LSU D1/D2 regions, which differed from strain X54 with cream colonies and ovoid to ellipsoidal cells by 6 nt substitutions (1 %) and 9 nt mismatches (1.5 %) in the D1/D2 domains and ITS region, respectively. They could also be distinguished from each other in assimilation of glucitol and salicin, growth at 28 °C and cell fibrillar appendages under scanning electron microscopy. The three strains differed from known species of Teunia by more than 8 nt (1.3 %) and 30 nt (5 %) in the D1/D2 domains and ITS region, respectively. Therefore, the names Teunia rudbeckiae sp. nov. (Holotype CGMCC 2.5840, Mycobank MB 835892) and Teunia rosae sp. nov. (Holotype CGMCC 2.5830, MycoBank MB 835891) are proposed to accommodate strain X54, and strains 12A8 and 21S4, respectively.
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Affiliation(s)
- Gui-Shuang Wang
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Science, Beijing 100101, PR China.,Tibet Agricultural and Animal Husbandry University, Nyingchi 860000, Tibet, PR China.,Key Laboratory of Microbial Diversity Research and Application of Hebei Province, College of Life Sciences, Institute of Life Sciences and Green Development, Hebei University, Baoding 071002, Hebei, PR China
| | - Yu Zhou
- School of Biotechnology and Food Science, Tianjin University of Commerce, Tianjin 300134, PR China
| | - Lu Xue
- School of Biotechnology and Food Science, Tianjin University of Commerce, Tianjin 300134, PR China
| | - Ai-Hua Li
- China General Microbiological Culture Collection Center and State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, PR China
| | - Wangmu
- Tibet Agricultural and Animal Husbandry University, Nyingchi 860000, Tibet, PR China
| | - Qi-Ming Wang
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Science, Beijing 100101, PR China.,Key Laboratory of Microbial Diversity Research and Application of Hebei Province, College of Life Sciences, Institute of Life Sciences and Green Development, Hebei University, Baoding 071002, Hebei, PR China
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12
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Roscini L, Conti A, Casagrande Pierantoni D, Robert V, Corte L, Cardinali G. Do Metabolomics and Taxonomic Barcode Markers Tell the Same Story about the Evolution of Saccharomyces sensu stricto Complex in Fermentative Environments? Microorganisms 2020; 8:microorganisms8081242. [PMID: 32824262 PMCID: PMC7463906 DOI: 10.3390/microorganisms8081242] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2020] [Revised: 08/08/2020] [Accepted: 08/13/2020] [Indexed: 01/07/2023] Open
Abstract
Yeast taxonomy was introduced based on the idea that physiological properties would help discriminate species, thus assuming a strong link between physiology and taxonomy. However, the instability of physiological characteristics within species configured them as not ideal markers for species delimitation, shading the importance of physiology and paving the way to the DNA-based taxonomy. The hypothesis of reconnecting taxonomy with specific traits from phylogenies has been successfully explored for Bacteria and Archaea, suggesting that a similar route can be traveled for yeasts. In this framework, thirteen single copy loci were used to investigate the predictability of complex Fourier Transform InfaRed spectroscopy (FTIR) and High-performance Liquid Chromatography–Mass Spectrometry (LC-MS) profiles of the four historical species of the Saccharomyces sensu stricto group, both on resting cells and under short-term ethanol stress. Our data show a significant connection between the taxonomy and physiology of these strains. Eight markers out of the thirteen tested displayed high correlation values with LC-MS profiles of cells in resting condition, confirming the low efficacy of FTIR in the identification of strains of closely related species. Conversely, most genetic markers displayed increasing trends of correlation with FTIR profiles as the ethanol concentration increased, according to their role in the cellular response to different type of stress.
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Affiliation(s)
- Luca Roscini
- Department of Pharmaceutical Sciences, University of Perugia, 06121 Perugia, Italy; (L.R.); (A.C.); (D.C.P.); (G.C.)
| | - Angela Conti
- Department of Pharmaceutical Sciences, University of Perugia, 06121 Perugia, Italy; (L.R.); (A.C.); (D.C.P.); (G.C.)
| | - Debora Casagrande Pierantoni
- Department of Pharmaceutical Sciences, University of Perugia, 06121 Perugia, Italy; (L.R.); (A.C.); (D.C.P.); (G.C.)
| | - Vincent Robert
- Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands;
| | - Laura Corte
- Department of Pharmaceutical Sciences, University of Perugia, 06121 Perugia, Italy; (L.R.); (A.C.); (D.C.P.); (G.C.)
- Correspondence: ; Tel.: +39-0755856478
| | - Gianluigi Cardinali
- Department of Pharmaceutical Sciences, University of Perugia, 06121 Perugia, Italy; (L.R.); (A.C.); (D.C.P.); (G.C.)
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13
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Zhou L, Zhang C, Qiu Z, He Y. Information fusion of emerging non-destructive analytical techniques for food quality authentication: A survey. Trends Analyt Chem 2020. [DOI: 10.1016/j.trac.2020.115901] [Citation(s) in RCA: 36] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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An improved method for MALDI-TOF analysis of wine-associated yeasts. J Microbiol Methods 2020; 172:105904. [DOI: 10.1016/j.mimet.2020.105904] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2020] [Revised: 03/24/2020] [Accepted: 03/24/2020] [Indexed: 02/04/2023]
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15
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Li AH, Yuan FX, Groenewald M, Bensch K, Yurkov AM, Li K, Han PJ, Guo LD, Aime MC, Sampaio JP, Jindamorakot S, Turchetti B, Inacio J, Fungsin B, Wang QM, Bai FY. Diversity and phylogeny of basidiomycetous yeasts from plant leaves and soil: Proposal of two new orders, three new families, eight new genera and one hundred and seven new species. Stud Mycol 2020; 96:17-140. [PMID: 32206137 PMCID: PMC7082220 DOI: 10.1016/j.simyco.2020.01.002] [Citation(s) in RCA: 78] [Impact Index Per Article: 19.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022] Open
Abstract
Nearly 500 basidiomycetous yeast species were accepted in the latest edition of The Yeasts: A Taxonomic Study published in 2011. However, this number presents only the tip of the iceberg of yeast species diversity in nature. Possibly more than 99 % of yeast species, as is true for many groups of fungi, are yet unknown and await discovery. Over the past two decades nearly 200 unidentified isolates were obtained during a series of environmental surveys of yeasts in phyllosphere and soils, mainly from China. Among these isolates, 107 new species were identified based on the phylogenetic analyses of nuclear ribosomal DNA (rDNA) [D1/D2 domains of the large subunit (LSU), the small subunit (SSU), and the internal transcribed spacer region including the 5.8S rDNA (ITS)] and protein-coding genes [both subunits of DNA polymerase II (RPB1 and RPB2), the translation elongation factor 1-α (TEF1) and the mitochondrial gene cytochrome b (CYTB)], and physiological comparisons. Forty-six of these belong to 16 genera in the Tremellomycetes (Agaricomycotina). The other 61 are distributed in 26 genera in the Pucciniomycotina. Here we circumscribe eight new genera, three new families and two new orders based on the multi-locus phylogenetic analyses combined with the clustering optimisation analysis and the predicted similarity thresholds for yeasts and filamentous fungal delimitation at genus and higher ranks. Additionally, as a result of these analyses, three new combinations are proposed and 66 taxa are validated.
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Key Words
- Apiotrichum xylopini S.O. Suh, C.F. Lee, Gujjari & J.J. Zhou ex Kachalkin, Yurkov & Boekhout
- Bannozyma arctica Vishniac & M. Takash. ex Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout
- Basidiomycetous yeasts
- Begerowomyces Q.M. Wang & F.Y. Bai
- Begerowomyces foliicola Q.M. Wang, F.Y. Bai & A.H. Li
- Bensingtonia pseudorectispora Q.M. Wang, F.Y. Bai & A.H. Li
- Bensingtonia wuzhishanensis Q.M. Wang, F.Y. Bai & A.H. Li
- Boekhoutia Q.M. Wang & F.Y. Bai
- Boekhoutia sterigmata Q.M. Wang, F.Y. Bai & A.H. Li
- Bulleribasidium cremeum Q.M. Wang, F.Y. Bai & A.H. Li
- Bulleribasidium elongatum Q.M. Wang, F.Y. Bai & A.H. Li
- Bulleribasidium panici Fungsin, M. Takash. & Nakase ex Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout
- Bulleribasidium phyllophilum Q.M. Wang, F.Y. Bai & A.H. Li
- Bulleribasidium phyllostachydis Q.M. Wang, F.Y. Bai & A.H. Li
- Bulleribasidium pseudopanici Q.M. Wang, F.Y. Bai & A.H. Li
- Bulleribasidium siamense Fungsin, M. Takash. & Nakase ex Q.M. Wang, F.Y. Bai, Boekhout & Nakase
- Carcinomyces arundinariae Fungsin, M. Takash. & Nakase ex Yurkov
- Carlosrosaea foliicola Q.M. Wang, F.Y. Bai & A.H. Li
- Carlosrosaea simaoensis Q.M. Wang, F.Y. Bai & A.H. Li
- Chrysozyma cylindrica Q.M. Wang, F.Y. Bai & A.H. Li
- Chrysozyma flava Q.M. Wang, F.Y. Bai & A.H. Li
- Chrysozyma fusiformis Q.M. Wang, F.Y. Bai & A.H. Li
- Chrysozyma iridis Q.M. Wang, F.Y. Bai & A.H. Li
- Chrysozyma pseudogriseoflava Q.M. Wang, F.Y. Bai & A.H. Li
- Chrysozyma rhododendri Q.M. Wang, F.Y. Bai & A.H. Li
- Chrysozyma sambuci Q.M. Wang, F.Y. Bai & A.H. Li
- Chrysozyma sorbariae Q.M. Wang, F.Y. Bai & A.H. Li
- Colacogloea aletridis Q.M. Wang, F.Y. Bai & A.H. Li
- Colacogloea hydrangeae Q.M. Wang, F.Y. Bai & A.H. Li
- Colacogloea rhododendri Q.M. Wang, F.Y. Bai & A.H. Li
- Colacogloea subericola (Belloch, Villa-Carv., Á;lv.-Rodríg. & Coque) Q.M. Wang, & F.Y. Bai
- Cystobasidium alpinum Turchetti, Selbmann, Onofri & Buzzini
- Cystobasidium portillonense Laich, Vaca & R. Chávez ex Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout
- Cystobasidium raffinophilum Q.M. Wang, F.Y. Bai & A.H. Li
- Cystobasidium terricola Q.M. Wang, F.Y. Bai & A.H. Li
- Derxomyces bifurcus Q.M. Wang, F.Y. Bai & A.H. Li
- Derxomyces cylindricus F.Y. Bai, Q.M. Wang & M. Takash. ex F.Y. Bai & Q.M. Wang
- Derxomyces elongatus Q.M. Wang, F.Y. Bai & A.H. Li
- Derxomyces hubeiensis F.Y. Bai, Q.M. Wang & M. Takash. ex F.Y. Bai & Q.M. Wang
- Derxomyces longicylindricus Q.M. Wang, F.Y. Bai & A.H. Li
- Derxomyces longiovatus Q.M. Wang, F.Y. Bai & A.H. Li
- Derxomyces melastomatis Q.M. Wang, F.Y. Bai & A.H. Li
- Derxomyces nakasei F.Y. Bai, Q.M. Wang & M. Takash. ex F.Y. Bai & Q.M. Wang
- Derxomyces napiformis Q.M. Wang, F.Y. Bai & A.H. Li
- Derxomyces ovatus Q.M. Wang, F.Y. Bai & A.H. Li
- Derxomyces polymorphus Q.M. Wang, F.Y. Bai & A.H. Li
- Derxomyces pseudoboekhoutii Q.M. Wang, F.Y. Bai & A.H. Li
- Derxomyces pseudoyunnanensis Q.M. Wang, F.Y. Bai & A.H. Li
- Derxomyces taiwanicus Q.M. Wang, F.Y. Bai & A.H. Li
- Derxomyces xingshanicus Q.M. Wang, F.Y. Bai & A.H. Li
- Dioszegia heilongjiangensis Q.M. Wang, F.Y. Bai & A.H. Li
- Dioszegia kandeliae Q.M. Wang, F.Y. Bai, L.D. Guo & A.H. Li
- Dioszegia maotaiensis Q.M. Wang, F.Y. Bai & A.H. Li
- Dioszegia milinica Q.M. Wang, F.Y. Bai & A.H. Li
- Dioszegia ovata Q.M. Wang, F.Y. Bai & A.H. Li
- Dioszegia zsoltii F.Y. Bai, M. Takash. & Nakase
- F.Y. Bai, M. Groenew. & Boekhout
- Filobasidium dingjieense Q.M. Wang, F.Y. Bai & A.H. Li
- Filobasidium globosum Q.M. Wang, F.Y. Bai & A.H. Li
- Filobasidium mali Q.M. Wang, F.Y. Bai & A.H. Li
- Filobasidium mucilaginum Q.M. Wang, F.Y. Bai & A.H. Li
- Genolevuria bromeliarum Landell & P. Valente ex Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout
- Genolevuria pseudoamylolytica Q.M. Wang, F.Y. Bai & A.H. Li
- Glaciozyma Turchetti, Connell, Thomas-Hall & Boekhout ex M. Groenew. & Q.M. Wang
- Glaciozyma antarctica (Fell, Statzell, I.L. Hunter & Phaff) M. Groenew. & Q.M. Wang
- Glaciozyma martinii Turchetti, Connell, Thomas-Hall & Boekhout
- Glaciozyma watsonii Turchetti, Connell, Thomas-Hall & Boekhout
- Heitmania cylindrica Q.M. Wang, F.Y. Bai & A.H. Li
- Heitmania tridentata Q.M. Wang, F.Y. Bai & A.H. Li
- Heitmaniaceae Q.M. Wang & F.Y. Bai
- Heitmaniales Q.M. Wang & F.Y. Bai
- Holtermannia saccardoi Q.M. Wang, F.Y. Bai & A.H. Li
- Jianyuniaceae Q.M. Wang & F.Y. Bai
- Kockovaella haikouensis Q.M. Wang, F.Y. Bai & A.H. Li
- Kockovaella ischaemi Q.M. Wang, F.Y. Bai & A.H. Li
- Kockovaella mexicana Lopandić, O. Molnár & Prillinger ex Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout
- Kockovaella nitrophila Q.M. Wang, F.Y. Bai & A.H. Li
- Kondoa arboricola Q.M. Wang, F.Y. Bai & A.H. Li
- Kondoa chamaenerii Q.M. Wang, F.Y. Bai & A.H. Li
- Kondoa cylindrica Q.M. Wang, F.Y. Bai & A.H. Li
- Kondoa daliangziensis Q.M. Wang, F.Y. Bai & A.H. Li
- Kondoa foliicola Q.M. Wang, F.Y. Bai & A.H. Li
- Kondoa lulangica Q.M. Wang, F.Y. Bai & A.H. Li
- Kondoa myxariophila Q.M. Wang, F.Y. Bai & A.H. Li
- Kondoa rhododendri Q.M. Wang, F.Y. Bai & A.H. Li
- Kondoa ribitophobia Q.M. Wang, F.Y. Bai & A.H. Li
- Kondoa thailandica Fungsin, Hamam. & Nakase ex Q.M. Wang, M. Groenew., F.Y. Bai & Boekhout
- Kwoniella newhampshirensis K. Sylvester, Q.M. Wang & C.T. Hittinger
- Kwoniella ovata Q.M. Wang, F.Y. Bai & A.H. Li
- Kwoniella shandongensis R. Chen, Y.M. Jiang & S.C. Wei ex M. Groenew. & Q.M. Wang
- Leucosporidium creatinivorum (Golubev) M. Groenew. & Q.M. Wang
- Leucosporidium fragarium (J.A. Barnett & Buhagiar) M. Groenew. & Q.M. Wang
- Leucosporidium intermedium (Nakase & M. Suzuki) M. Groenew. & Q.M. Wang
- Leucosporidium muscorum (Di Menna) M. Groenew. & Q.M. Wang
- Leucosporidium yakuticum (Golubev) M. Groenew. & Q.M. Wang
- Meniscomyces Q.M. Wang & F.Y. Bai
- Meniscomyces layueensis Q.M. Wang, F.Y. Bai & A.H. Li
- Microbotryozyma swertiae Q.M. Wang, F.Y. Bai & A.H. Li
- Microsporomyces ellipsoideus Q.M. Wang, F.Y. Bai & A.H. Li
- Microsporomyces pseudomagnisporus Q.M. Wang, F.Y. Bai & A.H. Li
- Microsporomyces rubellus Q.M. Wang, F.Y. Bai & A.H. Li
- Molecular phylogeny
- Naganishia onofrii Turchetti, Selbmann & Zucconi ex Yurkov
- Naganishia vaughanmartiniae Turchetti, Blanchette & Arenz ex Yurkov
- Nielozyma Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout
- Nielozyma formosana Nakase, Tsuzuki, F.L. Lee & M. Takash. ex Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout
- Nielozyma melastomatis Nakase, Tsuzuki, F.L. Lee & M. Takash. ex Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout
- Oberwinklerozyma dicranopteridis Q.M. Wang, F.Y. Bai & A.H. Li
- Oberwinklerozyma nepetae Q.M. Wang, F.Y. Bai & A.H. Li
- Oberwinklerozyma silvestris Golubev & Scorzetti ex Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout
- Oberwinklerozyma straminea Golubev & Scorzetti ex Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout
- Papiliotrema aspenensis (Ferreira-Paim, et al.) Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout
- Papiliotrema baii Yurkov, M.A. Guerreiro & Á;. Fonseca ex Yurkov
- Papiliotrema frias V. de García, Zalar, Brizzio, Gunde-Cim. & Van Broock ex Yurkov
- Papiliotrema hoabinhensis D.T. Luong, M. Takash., Ty, Dung & Nakase ex Yurkov
- Papiliotrema japonica J.P. Samp., Fonseca & Fell ex Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout
- Papiliotrema terrestris Crestani, Landell, Faganello, Vainstein, Vishniac & P. Valente ex Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout
- Papiliotrema wisconsinensis K. Sylvester, Q.M. Wang & Hittinger ex Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout
- Phaeotremella lactea Q.M. Wang, F.Y. Bai & A.H. Li
- Phaeotremella ovata Q.M. Wang, F.Y. Bai & A.H. Li
- Phaffia aurantiaca Q.M. Wang, F.Y. Bai & A.H. Li
- Phyllozyma aceris Q.M. Wang, F.Y. Bai & A.H. Li
- Phyllozyma jiayinensis Q.M. Wang, F.Y. Bai & A.H. Li
- Piskurozyma fildesensis T.T. Zhang & Li Y. Yu ex Yurkov
- Piskurozyma taiwanensis Nakase, Tsuzuki & M. Takash. ex Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout
- Pseudobensingtonia fusiformis Q.M. Wang, F.Y. Bai & A.H. Li
- Pseudohyphozyma hydrangeae Q.M. Wang, F.Y. Bai & A.H. Li
- Pseudohyphozyma lulangensis Q.M. Wang, F.Y. Bai & A.H. Li
- Pseudoleucosporidium V. de García, et al. ex M. Groenew. & Q.M. Wang
- Pseudoleucosporidium fasciculatum (Babeva & Lisichk.) M. Groenew. & Q.M. Wang
- Pseudosterigmatospora Q.M. Wang & F.Y. Bai
- Pseudosterigmatospora motuoensis Q.M. Wang, F.Y. Bai & A.H. Li
- Pseudotremella lacticolour Satoh & Makimura ex Yurkov
- Rhodosporidiobolus fuzhouensis Q.M. Wang, F.Y. Bai & A.H. Li
- Rhodosporidiobolus jianfalingensis Q.M. Wang, F.Y. Bai & A.H. Li
- Rhodosporidiobolus platycladi Q.M. Wang, F.Y. Bai & A.H. Li
- Rhynchogastrema complexa (Landell, et al.) Xin Zhan Liu, F.Y. Bai, M. Groenew., Boekhout & Yurkov
- Rhynchogastrema fermentans (C.F. Lee) Xin Zhan Liu, F.Y. Bai, M. Groenew., Boekhout & Yurkov
- Rhynchogastrema glucofermentans (S.O. Suh & M. Blackw.) Xin Zhan Liu, F.Y. Bai, M. Groenew., Boekhout & Yurkov
- Rhynchogastrema nanyangensis F.L. Hui & Q.H. Niu ex Xin Zhan Liu, F.Y. Bai, M. Groenew., Boekhout & Yurkov
- Rhynchogastrema tunnelae (Boekhout, Fell, Scorzetti & Theelen) Xin Zhan Liu, F.Y. Bai, M. Groenew., Boekhout & Yurkov
- Rhynchogastrema visegradensis (G. Péter & Dlauchy) Xin Zhan Liu, F.Y. Bai, M. Groenew., Boekhout &Yurkov
- Robertozyma Q.M. Wang & F.Y. Bai
- Robertozyma ningxiaensis Q.M. Wang, F.Y. Bai & A.H. Li
- Rosettozyma Q.M. Wang & F.Y. Bai
- Rosettozyma cystopteridis Q.M. Wang, F.Y. Bai & A.H. Li
- Rosettozyma motuoensis Q.M. Wang, F.Y. Bai & A.H. Li
- Rosettozyma petaloides Q.M. Wang, F.Y. Bai & A.H. Li
- Rosettozymaceae Q.M. Wang & F.Y. Bai
- Rosettozymales Q.M. Wang & F.Y. Bai
- Ruinenia bangxiensis Q.M. Wang, F.Y. Bai & A.H. Li
- Ruinenia diospyri Nakase, Tsuzuki, F.L. Lee, Jindam. & M. Takash. ex Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout
- Ruinenia fanjingshanensis Q.M. Wang, F.Y. Bai & A.H. Li
- Ruinenia lunata Q.M. Wang, F.Y. Bai & A.H. Li
- Ruinenia pyrrosiae Nakase, Tsuzuki, F.L. Lee, Jindam. & M. Takash. ex Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout
- Saitozyma ninhbinhensis (D.T. Luong, M. Takash., Dung & Nakase)Yurkov
- Saitozyma paraflava Golubev & J.P. Samp. ex Xin Zhan Liu
- Saitozyma pseudoflava Q.M. Wang, F.Y. Bai & A.H. Li
- Sakaguchia melibiophila M. Groenew., Q.M. Wang & F.Y. Bai
- Slooffia globosa Q.M. Wang, F.Y. Bai & A.H. Li
- Solicoccozyma gelidoterrea Q.M. Wang, F.Y. Bai & A.H. Li
- Species diversity
- Sporobolomyces cellobiolyticus Q.M. Wang, F.Y. Bai & A.H. Li
- Sporobolomyces ellipsoideus Q.M. Wang, F.Y. Bai & A.H. Li
- Sporobolomyces primogenomicus Q.M. Wang & F.Y. Bai
- Sporobolomyces reniformis Q.M. Wang, F.Y. Bai & A.H. Li
- Sterigmatospora Q.M. Wang & F.Y. Bai
- Sterigmatospora layueensis Q.M. Wang, F.Y. Bai & A.H. Li
- Symmetrospora oryzicola (Nakase & M. Suzuki) Q.M. Wang & F.Y. Bai
- Symmetrospora rhododendri Q.M. Wang, F.Y. Bai & A.H. Li
- Taxonomy
- Teunia Q.M. Wang & F.Y. Bai
- Teunia betulae K. Sylvester, Q.M. Wang & Hittinger ex Q.M. Wang, F.Y. Bai & A.H. Li
- Teunia cuniculi (K.S. Shin & Y.H. Park) Q.M. Wang, F.Y. Bai & A.H. Li
- Teunia globosa Q.M. Wang, F.Y. Bai & A.H. Li
- Teunia helanensis Q.M. Wang, F.Y. Bai & A.H. Li
- Teunia korlaensis Q.M. Wang, F.Y. Bai & A.H. Li
- Teunia tronadorensis V. de Garcia, Zalar, Brizzio, Gunde-Cim. & van Brook ex Q.M. Wang, F.Y. Bai & A.H. Li
- Tremella basidiomaticola Xin Zhan Liu & F.Y. Bai
- Tremella shuangheensis Q.M. Wang, F.Y. Bai & A.H. Li
- Trimorphomyces sakaeraticus Fungsin, M. Takash. & Nakase ex Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout
- Vanrija meifongana C.F. Lee ex Kachalkin Yurkov & Boekhout
- Vanrija nantouana C.F. Lee ex Kachalkin Yurkov & Boekhout
- Vanrija thermophila Vogelmann, S. Chaves & C. Hertel ex Kachalkin Yurkov & Boekhout
- Vishniacozyma europaea Q.M. Wang, F.Y. Bai & A.H. Li
- Vishniacozyma foliicola Q.M. Wang & F.Y. Bai ex Yurkov
- Vishniacozyma heimaeyensis Vishniac ex Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout
- Vishniacozyma melezitolytica Q.M. Wang, F.Y. Bai & A.H. Li
- Vishniacozyma pseudopenaeus Q.M. Wang, F.Y. Bai & A.H. Li
- Vishniacozyma psychrotolerans V. de García, Zalar, Brizzio, Gunde-Cim. & Van Broock ex Yurkov
- Vishniacozyma taibaiensis Q.M. Wang & F.Y. Bai ex Yurkov
- Vishniacozyma tephrensis Vishniac ex Xin Zhan Liu, F.Y. Bai, M. Groenew. & Boekhout
- Yamadamyces Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout
- Yamadamyces rosulatus Golubev & Scorzetti ex Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout
- Yamadamyces terricola Q.M. Wang, F.Y. Bai & A.H. Li
- Yurkovia longicylindrica Q.M. Wang, F.Y. Bai & A.H. Li
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Affiliation(s)
- A-H Li
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.,China General Microbiological Culture Collection Center and State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China
| | - F-X Yuan
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.,North Minzu University, Yinchuan, Ningxia, 750030, China
| | - M Groenewald
- Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, Utrecht, 3584 CT, The Netherlands
| | - K Bensch
- Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, Utrecht, 3584 CT, The Netherlands
| | - A M Yurkov
- Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Braunschweig, 38124, Germany
| | - K Li
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China
| | - P-J Han
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China
| | - L-D Guo
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China
| | - M C Aime
- Purdue University, Department of Botany and Plant Pathology, West Lafayette, IN, 47901, USA
| | - J P Sampaio
- UCIBIO-REQUIMTE, Departamento de Ciências da Vida, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, Caparica, Portugal.,PYCC - Portuguese Yeast Culture Collection, Departamento de Ciências da Vida, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, Caparica, Portugal
| | - S Jindamorakot
- National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), Pathum Thani, 12120, Thailand
| | - B Turchetti
- Department of Agriculture, Food and Environmental Sciences & Industrial Yeasts Collection DBVPG, University of Perugia, Perugia, 74 - I-06121, Italy
| | - J Inacio
- School of Pharmacy and Biomolecular Sciences, University of Brighton, Brighton, BN2 4GJ, UK
| | - B Fungsin
- TISTR Culture Collection, Thailand Institute of Scientific and Technological Research (TISTR), 35 M 3, Technopolis, Khlong Ha, Khlong Luang, Pathum Thani, 12120, Thailand
| | - Q-M Wang
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.,College of Life Sciences, Hebei University, Baoding, Hebei Province, 071002, China
| | - F-Y Bai
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China
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De Vero L, Boniotti MB, Budroni M, Buzzini P, Cassanelli S, Comunian R, Gullo M, Logrieco AF, Mannazzu I, Musumeci R, Perugini I, Perrone G, Pulvirenti A, Romano P, Turchetti B, Varese GC. Preservation, Characterization and Exploitation of Microbial Biodiversity: The Perspective of the Italian Network of Culture Collections. Microorganisms 2019; 7:microorganisms7120685. [PMID: 31842279 PMCID: PMC6956255 DOI: 10.3390/microorganisms7120685] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2019] [Revised: 12/09/2019] [Accepted: 12/10/2019] [Indexed: 02/06/2023] Open
Abstract
Microorganisms represent most of the biodiversity of living organisms in every ecological habitat. They have profound effects on the functioning of any ecosystem, and therefore on the health of our planet and of human beings. Moreover, microorganisms are the main protagonists in food, medical and biotech industries, and have several environmental applications. Accordingly, the characterization and preservation of microbial biodiversity are essential not only for the maintenance of natural ecosystems but also for research purposes and biotechnological exploitation. In this context, culture collections (CCs) and microbial biological resource centres (mBRCs) are crucial for the safeguarding and circulation of biological resources, as well as for the progress of life sciences. This review deals with the expertise and services of CCs, in particular concerning preservation and characterization of microbial resources, by pointing to the advanced approaches applied to investigate a huge reservoir of microorganisms. Data sharing and web services as well as the tight interconnection between CCs and the biotechnological industry are highlighted. In addition, guidelines and regulations related to quality management systems (QMSs), biosafety and biosecurity issues are discussed according to the perspectives of CCs and mBRCs.
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Affiliation(s)
- Luciana De Vero
- Unimore Microbial Culture Collection, Department of Life Sciences, University of Modena and Reggio Emilia, via Amendola 2, 42122 Reggio Emilia, Italy; (S.C.); (M.G.); (A.P.)
- Correspondence: ; Tel.: +39-0522-522-057
| | - Maria Beatrice Boniotti
- Biobank of Veterinary Resources, Istituto Zooprofilattico Sperimentale della Lombardia ed Emilia Romagna, via Bianchi 9, 25124 Brescia, Italy;
| | - Marilena Budroni
- Department of Agricultural Science, University of Sassari, viale Italia 39, 07100 Sassari, Italy; (M.B.); (I.M.)
| | - Pietro Buzzini
- Department of Agriculture, Food and Environmental Science, University of Perugia, borgo XX Giugno, 74, I-06121 Perugia, Italy; (P.B.); (B.T.)
| | - Stefano Cassanelli
- Unimore Microbial Culture Collection, Department of Life Sciences, University of Modena and Reggio Emilia, via Amendola 2, 42122 Reggio Emilia, Italy; (S.C.); (M.G.); (A.P.)
| | - Roberta Comunian
- Agris Sardegna, Agenzia regionale per la ricerca in agricoltura, Loc. Bonassai, km 18.600 SS291, 07100 Sassari, Italy;
| | - Maria Gullo
- Unimore Microbial Culture Collection, Department of Life Sciences, University of Modena and Reggio Emilia, via Amendola 2, 42122 Reggio Emilia, Italy; (S.C.); (M.G.); (A.P.)
| | - Antonio F. Logrieco
- Institute of Sciences of Food Production (ISPA), National Research Council (CNR), Via G. Amendola 122/O, 70126 Bari, Italy; (A.F.L.); (G.P.)
| | - Ilaria Mannazzu
- Department of Agricultural Science, University of Sassari, viale Italia 39, 07100 Sassari, Italy; (M.B.); (I.M.)
| | - Rosario Musumeci
- MicroMiB Culture Collection, Department of Medicine and Surgery, University of Milano-Bicocca, via Cadore 48, 20900 Monza, Italy;
| | - Iolanda Perugini
- Department of Life Sciences and Systems Biology, University of Turin, viale Mattioli, 25, 10125 Torino, Italy; (I.P.); (G.C.V.)
| | - Giancarlo Perrone
- Institute of Sciences of Food Production (ISPA), National Research Council (CNR), Via G. Amendola 122/O, 70126 Bari, Italy; (A.F.L.); (G.P.)
| | - Andrea Pulvirenti
- Unimore Microbial Culture Collection, Department of Life Sciences, University of Modena and Reggio Emilia, via Amendola 2, 42122 Reggio Emilia, Italy; (S.C.); (M.G.); (A.P.)
| | - Paolo Romano
- Mass Spectrometry and Proteomics, Scientific Direction, IRCCS Ospedale Policlinico San Martino, Largo Rosanna Benzi 10, 16132 Genova, Italy;
| | - Benedetta Turchetti
- Department of Agriculture, Food and Environmental Science, University of Perugia, borgo XX Giugno, 74, I-06121 Perugia, Italy; (P.B.); (B.T.)
| | - Giovanna Cristina Varese
- Department of Life Sciences and Systems Biology, University of Turin, viale Mattioli, 25, 10125 Torino, Italy; (I.P.); (G.C.V.)
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Lauterbach A, Geissler AJ, Eisenbach L, Behr J, Vogel RF. Novel diagnostic marker genes differentiate Saccharomyces
with respect to their potential application. JOURNAL OF THE INSTITUTE OF BREWING 2018. [DOI: 10.1002/jib.525] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Alexander Lauterbach
- Lehrstuhl für Technische Mikrobiologie; Technische Universität München; Gregor-Mendel Str. 4 85354 Freising Germany
| | - Andreas J. Geissler
- Lehrstuhl für Technische Mikrobiologie; Technische Universität München; Gregor-Mendel Str. 4 85354 Freising Germany
| | - Lara Eisenbach
- Lehrstuhl für Technische Mikrobiologie; Technische Universität München; Gregor-Mendel Str. 4 85354 Freising Germany
| | - Jürgen Behr
- Lehrstuhl für Technische Mikrobiologie; Technische Universität München; Gregor-Mendel Str. 4 85354 Freising Germany
- Bavarian Center for Biomolecular Mass Spectrometry; Gregor-Mendel Str. 4 85354 Freising Germany
| | - Rudi F. Vogel
- Lehrstuhl für Technische Mikrobiologie; Technische Universität München; Gregor-Mendel Str. 4 85354 Freising Germany
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18
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Assessment of Multi Fragment Melting Analysis System (MFMAS) for the Identification of Food-Borne Yeasts. Curr Microbiol 2018; 75:716-725. [DOI: 10.1007/s00284-018-1437-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2017] [Accepted: 01/12/2018] [Indexed: 11/30/2022]
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19
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Simultaneous characterization of chemical structures and bioactivities of citrus-derived components using SERS barcodes. Food Chem 2018; 240:743-750. [DOI: 10.1016/j.foodchem.2017.07.103] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2017] [Revised: 06/29/2017] [Accepted: 07/24/2017] [Indexed: 12/18/2022]
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20
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Kesmen Z, Özbekar E, Büyükkiraz M. Multifragment melting analysis of yeast species isolated from spoiled fruits. J Appl Microbiol 2018; 124:522-534. [DOI: 10.1111/jam.13645] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2016] [Revised: 10/13/2017] [Accepted: 11/13/2017] [Indexed: 11/29/2022]
Affiliation(s)
- Z. Kesmen
- Department of Food Engineering; Faculty of Engineering; Erciyes University; Kayseri Turkey
| | - E. Özbekar
- Department of Food Engineering; Faculty of Engineering; Erciyes University; Kayseri Turkey
| | - M.E. Büyükkiraz
- Department of Food Engineering; Faculty of Engineering; Erciyes University; Kayseri Turkey
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21
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Turvey ME, Weiland F, Keller EJ, Hoffmann P. The changing face of microbial quality control practices in the brewing industry: Introducing mass spectrometry proteomic fingerprinting for microbial identification. JOURNAL OF THE INSTITUTE OF BREWING 2017. [DOI: 10.1002/jib.428] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- M. E. Turvey
- Adelaide Proteomics Centre; The University of Adelaide; Australia
- Institute of Photonics and Advanced Sensing; Australia
- Singapore-MIT Alliance for Research and Technology Centre; Singapore
| | - F. Weiland
- Adelaide Proteomics Centre; The University of Adelaide; Australia
- Institute of Photonics and Advanced Sensing; Australia
| | - E. J. Keller
- Adelaide Proteomics Centre; The University of Adelaide; Australia
- Institute of Photonics and Advanced Sensing; Australia
| | - P. Hoffmann
- Adelaide Proteomics Centre; The University of Adelaide; Australia
- Institute of Photonics and Advanced Sensing; Australia
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22
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Application of high-resolution melting analysis for differentiation of spoilage yeasts. J Microbiol 2016; 54:618-625. [PMID: 27572511 DOI: 10.1007/s12275-016-6017-8] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2016] [Revised: 06/24/2016] [Accepted: 07/20/2016] [Indexed: 10/21/2022]
Abstract
A new method based on high resolution melting (HRM) analysis was developed for the differentiation and classification of the yeast species that cause food spoilage. A total 134 strains belonging to 21 different yeast species were examined to evaluate the discriminative power of HRM analysis. Two different highly variable DNA regions on the 26 rRNA gene were targeted to produce the HRM profiles of each strain. HRM-based grouping was compared and confirmed by (GTG)5 rep-PCR fingerprinting analysis. All of the yeast species belonging to the genera Pichia, Candida, Kazachstania, Kluyveromyces, Debaryomyces, Dekkera, Saccharomyces, Torulaspora, Ustilago, and Yarrowia, which were produced as species-specific HRM profiles, allowed discrimination at species and/or strain level. The HRM analysis of both target regions provided successful discrimination that correlated with rep-PCR fingerprinting analysis. Consequently, the HRM analysis has the potential for use in the rapid and accurate classification and typing of yeast species isolated from different foods to determine their sources and routes as well as to prevent contamination.
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23
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Phenotypical and molecular characterization of yeast content in the starter of “Tchoukoutou,” a Beninese African sorghum beer. Eur Food Res Technol 2016. [DOI: 10.1007/s00217-016-2711-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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