Lungworm infections in harbour porpoises (Phocoena phocoena) in the German Wadden Sea between 2006 and 2018, and serodiagnostic tests

Halocercus lagenorhynchi infection in a stranded striped dolphin Stenella coeruleoalba (Meyen, 1833) on the Southwest coastline of India

Necropsy on a striped dolphin Stenella coeruleoalba (Meyen, 1833) entangled in ghost fishing net and dead while rescuing yielded some helminth parasites, later identified as Halocercus lagenorhynchi. DNA barcoding of the host and parasite and the phylogenetic analysis of the parasite was conducted. This study provides valuable information towards establishing basal data of marine mammal parasite diversity and distribution in the Indian waters. We believe this is the first report of the occurrence of Halocercus lagenorhynchi in marine mammals in India.

Causes of Death and Pathological Findings in Stranded Harbour Porpoises (Phocoena phocoena) from Swedish Waters

Simple Summary

Disease factors and mortality etiologies of free ranging wild cetaceans such as the harbour porpoise (Phoceona phocoena) are difficult to study. However, stranded animals and carcasses can provide invaluable information on the health and biology of this species. Post-mortem examinations performed on 128 stranded harbour porpoises collected over 15 years from Swedish waters examined general health, disease findings and cause of death. The main cause of death was bycatch in fishing gear (31%, confirmed or suspected). Disease, most often pneumonia, was also a frequent cause of death (21%). Porpoise population health may mirror the overall health and stability of marine ecosystems and the effects of human activities on coastal environments. Monitoring health, diseases and causes of death of porpoises allows for identification of threats to these animals, to other animals, to humans and to the environment.

Abstract

Harbour porpoises (Phocoena phocoena) are useful indicators of the health of their wild populations and marine ecosystems, yet their elusive nature makes studying them in their natural environment challenging. Stranded porpoises provide an excellent source of data to study the health and biology of these animals and identify causes of death, diseases and other threats. The aim of this study was to document pathology, and where possible, cause of death in porpoises from Swedish waters. Post-mortem examinations were performed on 128 stranded porpoises collected from 2006 to 2020. Overall, bycatch including definitive and probable cases was the most common cause of death (31.4%), followed by disease (21.3%), predominantly pneumonia. In adults, infectious disease was the most common cause of death. Bacteria with zoonotic potential such as Erysipelothrix rhusiopathiae and Brucella sp. were documented for the first time in porpoises from Swedish waters, as was the porpoise-adapted group B Salmonella enterica ST416/ST417. Three of four deaths from non-infectious diseases involved parturition complications. Four cases of suspected predation were documented, but further analyses are required to confirm these findings. Our results are consistent with those from other regions in Europe and serve as a reference for future monitoring for changing patterns of health and disease of porpoises and their environments.

Genomic signatures of host adaptation in group B Salmonella enterica ST416/ST417 from harbour porpoises

A type of monophasic group B Salmonella enterica with the antigenic formula 4,12:a:- (“Fulica-like”) has been described as associated with harbour porpoises (Phocoena phocoena), most frequently recovered from lung samples. In the present study, lung tissue samples from 47 porpoises found along the Swedish coast or as bycatch in fishing nets were analysed, two of which were positive for S. enterica. Pneumonia due to the infection was considered the likely cause of death for one of the two animals. The recovered isolates were whole genome sequenced and found to belong to sequence type (ST) 416 and to be closely related to ST416/ST417 porpoise isolates from UK waters as determined by core-genome MLST. Serovars Bispebjerg, Fulica and Abortusequi were identified as distantly related to the porpoise isolates, but no close relatives from other host species were found. All ST416/417 isolates had extensive loss of function mutations in key Salmonella pathogenicity islands, but carried accessory genetic elements associated with extraintestinal infection such as iron uptake systems. Gene ontology and pathway analysis revealed reduced secondary metabolic capabilities and loss of function in terms of signalling and response to environmental cues, consistent with adaptation for the extraintestinal niche. A classification system based on machine learning identified ST416/417 as more invasive than classical gastrointestinal serovars. Genome analysis results are thus consistent with ST416/417 as a host-adapted and extraintestinal clonal population of S. enterica, which while found in porpoises without associated pathology can also cause severe opportunistic infections.

A global checklist of the parasites of the harbor porpoise Phocoena phocoena, a critically-endangered species, including new findings from the Baltic Sea

The common harbor porpoise is a widely-distributed marine mammal with three known subspecies, including P. phocoena phocoena, with a clearly distinct and critically endangered (CR) subpopulation from the Baltic Sea (Baltic Proper). As part of an assessment of the condition and health threats of these mammals, it is important to conduct parasitological monitoring. The aim of the study was therefore to compare the data on porpoise parasitofauna from this subpopulation with those on porpoises from other areas. The study included 37 individuals from 1995 to 2019; eight species of parasites were found (prevalence 83.8%, mean intensity 724.2, range 2-3940), with a predominance of lung nematodes - Stenurus minor (94.7%), Torynurus convolutus (69.4%), Pseudalius inflexus (63.8%), Halocercus invaginatus (22.2%); the highest intensity was recorded for S. minor (989, 53-2928). Two species of Anisakidae (Anisakis simplex - 33.3%, Contracaecum sp. - 20.0%) were found in the digestive tracts, which were a new record for this population. The fluke Campula oblonga was found in the livers of 31.3% of porpoises. The tapeworm Diphylobothrium stemmacephalum was also recorded in the intestine of one individual; this is typical for these hosts, but previously undetected in the Baltic subpopulation. Parasites coexisted in numerous hosts, constituting a heavy burden for them. The obtained data were compared with those from the P. phocoena parasitofauna from other regions, based on a compiled checklist (1809-2021) including all species of porpoise parasites (55 taxa). Compared to the worldwide porpoise parasitofauna checklist, the number of parasites found in the nominative subspecies (Baltic Proper subpopulation) is small: including only 10 taxa (eight in the current study). These species are typical of porpoises and usually the most common; however, the level of infection of Baltic porpoises (intensity and total parasite load) is very high, which can undoubtedly have a negative impact on their condition and overall health.