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Okazawa A, Sanada N, Takahashi S, Sato H, Hiraoka S. Pathway selection in the self-assembly of Rh 4L 4 coordination squares under kinetic control. Commun Chem 2023; 6:248. [PMID: 37968322 PMCID: PMC10651846 DOI: 10.1038/s42004-023-01053-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2023] [Accepted: 11/06/2023] [Indexed: 11/17/2023] Open
Abstract
Pathway selection principles in reversible reaction networks such as molecular self-assembly have not been established yet, because achieving kinetic control in reversible reaction networks is more complicated than in irreversible ones. In this study, we discovered that coordination squares consisting of cis-protected dinuclear rhodium(II) corner complexes and linear ditopic ligands are assembled under kinetic control, perfectly preventing the corresponding triangles, by modulating their energy landscapes with a weak monotopic carboxylate ligand (2,6-dichlorobenzoate: dcb-) as the leaving ligand. Experimental and numerical approaches revealed the self-assembly pathway where the cyclization step to form the triangular complex is blocked by dcb-. It was also found that one of the molecular squares assembled into a dimeric structure owing to the solvophobic effect, which was characterized by nuclear magnetic resonance spectroscopy and single-crystal X-ray analysis.
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Affiliation(s)
- Atsushi Okazawa
- Department of Electrical Engineering and Bioscience, Waseda University, Tokyo, 169-8555, Japan
| | - Naoki Sanada
- Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo, Tokyo, 153-8902, Japan
| | - Satoshi Takahashi
- Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo, Tokyo, 153-8902, Japan
| | - Hirofumi Sato
- Department of Molecular Engineering, Kyoto University, Kyoto, 615-8510, Japan
- Fukui Institute for Fundamental Chemistry, Kyoto University, Kyoto, 606-8103, Japan
| | - Shuichi Hiraoka
- Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo, Tokyo, 153-8902, Japan.
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2
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Zhou MY, Yu ZS, Deng W, Lu HL, Niu XF, Tong J, Yu SY, Fujita M. [M 8L 4] 8+-Type Squares Self-Assembled by Dipalladium Corners and Bridging Aromatic Dipyrazole Ligands for Iodine Capture. Inorg Chem 2023. [PMID: 37320970 DOI: 10.1021/acs.inorgchem.3c00893] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Square-like metallamacrocyclic palladium(II) complexes [M8L4]8+ (1-7) were synthesized by reacting aromatic dipyrazole ligands (H2L1-H2L3 with pyromellitic arylimide-, 1,4,5,8-naphthalenetetracarboxylic arylimide-, and anthracene-based aromatic groups, respectively) with dipalladium corners ([(bpy)2Pd2(NO3)2](NO3)2, [(dmbpy)2Pd2(NO3)2](NO3)2, or [(phen)2Pd2(NO3)2](NO3)2, where bpy = 2,2'-bipyridine, dmbpy = 4,4'-dimethyl-2,2'-bipyridine, and phen = 1,10-phenanthroline) in aqueous solutions via metal-directed self-assembly. Metallamacrocycles 1-7 were fully characterized by 1H and 13C nuclear magnetic resonance spectroscopy and electrospray ionization mass spectrometry, and the square structure of 7·8NO3- was further confirmed via single crystal X-ray diffraction. These square-like metallamacrocycles exhibit effective performance for iodine adsorption.
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Affiliation(s)
- Meng-Ying Zhou
- Center of Excellence for Environmental Safety and Biological Effects, Beijing Key Laboratory for Green Catalysis and Separation, Department of Chemistry, Faculty of Environment and Life, Beijing University of Technology, Beijing 100124, China
| | - Zheng-Su Yu
- Department of Applied Chemistry, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
| | - Wei Deng
- Center of Excellence for Environmental Safety and Biological Effects, Beijing Key Laboratory for Green Catalysis and Separation, Department of Chemistry, Faculty of Environment and Life, Beijing University of Technology, Beijing 100124, China
| | - Hong-Lin Lu
- Center of Excellence for Environmental Safety and Biological Effects, Beijing Key Laboratory for Green Catalysis and Separation, Department of Chemistry, Faculty of Environment and Life, Beijing University of Technology, Beijing 100124, China
| | - Xiao-Fei Niu
- Center of Excellence for Environmental Safety and Biological Effects, Beijing Key Laboratory for Green Catalysis and Separation, Department of Chemistry, Faculty of Environment and Life, Beijing University of Technology, Beijing 100124, China
| | - Jin Tong
- Center of Excellence for Environmental Safety and Biological Effects, Beijing Key Laboratory for Green Catalysis and Separation, Department of Chemistry, Faculty of Environment and Life, Beijing University of Technology, Beijing 100124, China
| | - Shu-Yan Yu
- Center of Excellence for Environmental Safety and Biological Effects, Beijing Key Laboratory for Green Catalysis and Separation, Department of Chemistry, Faculty of Environment and Life, Beijing University of Technology, Beijing 100124, China
| | - Makoto Fujita
- Department of Applied Chemistry, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
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3
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Fink D, Orth N, Ebel V, Gogesch FS, Staiger A, Linseis M, Ivanović-Burmazović I, Winter RF. Self-Assembled Redox-Active Tetraruthenium Macrocycles with Large Intracyclic Cavities. Organometallics 2020. [DOI: 10.1021/acs.organomet.0c00116] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Daniel Fink
- Fachbereich Chemie, Universität Konstanz, Universitätsstraße 10, 78457 Konstanz, Germany
| | - Nicole Orth
- Department Chemie und Pharmazie, Friedrich-Alexander-Universität Erlangen-Nürnberg, Egerlandstraße 1, 91058 Erlangen, Germany
| | - Viktoria Ebel
- Fachbereich Chemie, Universität Konstanz, Universitätsstraße 10, 78457 Konstanz, Germany
| | - Franciska S. Gogesch
- Fachbereich Chemie, Universität Konstanz, Universitätsstraße 10, 78457 Konstanz, Germany
| | - Anne Staiger
- Fachbereich Chemie, Universität Konstanz, Universitätsstraße 10, 78457 Konstanz, Germany
| | - Michael Linseis
- Fachbereich Chemie, Universität Konstanz, Universitätsstraße 10, 78457 Konstanz, Germany
| | - Ivana Ivanović-Burmazović
- Department Chemie und Pharmazie, Friedrich-Alexander-Universität Erlangen-Nürnberg, Egerlandstraße 1, 91058 Erlangen, Germany
| | - Rainer F. Winter
- Fachbereich Chemie, Universität Konstanz, Universitätsstraße 10, 78457 Konstanz, Germany
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4
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Fink D, Orth N, Linseis M, Ivanović-Burmazović I, Winter RF. Ring size matters: supramolecular isomerism in self-assembled redox-active tetra- and hexaruthenium macrocycles. Chem Commun (Camb) 2020; 56:1062-1065. [PMID: 31872198 DOI: 10.1039/c9cc09307a] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Self-assembly of a divinylthiophene-bridged diruthenium complex with 2,5-furandicarboxylate leads to the formation of two macrocyclic structures that differ solely with regard to their respective nuclearities. Both supramolecular isomers were fully characterized and the conversion of the hexa- to the tetraruthenium macrocycle was followed by NMR monitoring.
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Affiliation(s)
- Daniel Fink
- Fachbereich Chemie, Universität Konstanz, Universitätsstraße 10, 78457 Konstanz, Germany.
| | - Nicole Orth
- Department Chemie und Pharmazie, Friedrich-Alexander-Universität Erlangen-Nürnberg, Egerlandstraße 1, 91058 Erlangen, Germany
| | - Michael Linseis
- Fachbereich Chemie, Universität Konstanz, Universitätsstraße 10, 78457 Konstanz, Germany.
| | - Ivana Ivanović-Burmazović
- Department Chemie und Pharmazie, Friedrich-Alexander-Universität Erlangen-Nürnberg, Egerlandstraße 1, 91058 Erlangen, Germany
| | - Rainer F Winter
- Fachbereich Chemie, Universität Konstanz, Universitätsstraße 10, 78457 Konstanz, Germany.
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5
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Liu M, Tang F, Yang Z, Xu J, Yang X. Recent Progress on Gold-Nanocluster-Based Fluorescent Probe for Environmental Analysis and Biological Sensing. JOURNAL OF ANALYTICAL METHODS IN CHEMISTRY 2019; 2019:1095148. [PMID: 30719370 PMCID: PMC6334364 DOI: 10.1155/2019/1095148] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2018] [Revised: 11/18/2018] [Accepted: 12/02/2018] [Indexed: 05/07/2023]
Abstract
Gold nanoclusters (AuNCs) are one of metal nanoclusters, which play a pivotal role in the recent advances in the research of fluorescent probes for their fluorescence effect. They are favored by most researchers due to their strong stability in fluorescence and adjustability in fluorescence wavelength when compared to traditional organic fluorescent dyes. In this review, we introduce various synthesis strategies of gold-nanocluster-based fluorescent probes and summarize their application for environmental analysis and biological sensing. The use of gold-nanocluster-based fluorescent probes for the analysis of heavy metals and inorganic and organic pollutants is covered in the environmental analysis while biological labeling, imaging, and detection are presented in biological sensing.
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Affiliation(s)
- Mingxian Liu
- College of Chemistry and Chemical Engineering, Chemical Synthesis and Pollution Control Key Laboratory of Sichuan Province, China West Normal University, Nanchong 637000, China
| | - Fenglin Tang
- College of Chemistry and Chemical Engineering, Chemical Synthesis and Pollution Control Key Laboratory of Sichuan Province, China West Normal University, Nanchong 637000, China
| | - Zhengli Yang
- College of Chemistry and Chemical Engineering, Chemical Synthesis and Pollution Control Key Laboratory of Sichuan Province, China West Normal University, Nanchong 637000, China
| | - Jing Xu
- College of Chemistry and Chemical Engineering, Chemical Synthesis and Pollution Control Key Laboratory of Sichuan Province, China West Normal University, Nanchong 637000, China
| | - Xiupei Yang
- College of Chemistry and Chemical Engineering, Chemical Synthesis and Pollution Control Key Laboratory of Sichuan Province, China West Normal University, Nanchong 637000, China
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6
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Yu S, Lu H. From
Metal‐Metal Bonding
to
Supra‐Metal‐Metal Bonding
Directed Self‐Assembly: Supramolecular Architectures of Group 10 and 11 Metals with Ligands from Mono‐ to Poly‐Pyrazoles. Isr J Chem 2018. [DOI: 10.1002/ijch.201800097] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Shu‐Yan Yu
- Beijing Key Laboratory of Green Catalysis and Separation, Laboratory for Self-Assembly Chemistry Department of Chemistry and Chemical IndustryBeijing University of Technology 100124 Beijing P. R. China
| | - Hong‐Lin Lu
- Beijing Key Laboratory of Green Catalysis and Separation, Laboratory for Self-Assembly Chemistry Department of Chemistry and Chemical IndustryBeijing University of Technology 100124 Beijing P. R. China
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Howlader P, Mukherjee PS. Face and edge directed self-assembly of Pd 12 tetrahedral nano-cages and their self-sorting. Chem Sci 2016; 7:5893-5899. [PMID: 30034731 PMCID: PMC6024303 DOI: 10.1039/c6sc02012g] [Citation(s) in RCA: 57] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2016] [Accepted: 05/19/2016] [Indexed: 12/22/2022] Open
Abstract
Reactions of a cis-blocked Pd(ii) 90° acceptor [cis-(tmeda)Pd(NO3)2] (M) with 1,4-di(1H-tetrazol-5-yl)benzene (H2L1 ) and [1,3,5-tri(1H-tetrazol-5-yl)benzene] (H3L2 ) in 1 : 1 and 3 : 2 molar ratios respectively, yielded soft metallogels G1 and G2 [tmeda = N,N,N',N'-tetramethylethane-1,2-diamine]. Post-metalation of the gels G1 and G2 with M yielded highly water-soluble edge and face directed self-assembled Pd12 tetrahedral nano-cages T1 and T2, respectively. Such facile conversion of Pd(ii) gels to discrete tetrahedral metallocages is unprecedented. Moreover, distinct self-sorting of these two tetrahedral cages of similar sizes was observed in the self-assembly of M with a mixture of H2L1 and H3L2 in aqueous medium. The edge directed tetrahedral cage (T1) was successfully used to perform Michael reactions of a series of water insoluble nitro-olefins assisted by encapsulation into the cage in aqueous medium.
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Affiliation(s)
- Prodip Howlader
- Inorganic and Physical Chemistry Department , Indian Institute of Science , Bangalore-560012 , India . ; ; Tel: +91-80-22933352
| | - Partha Sarathi Mukherjee
- Inorganic and Physical Chemistry Department , Indian Institute of Science , Bangalore-560012 , India . ; ; Tel: +91-80-22933352
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