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Baruah B, Dutta MP, Banerjee S, Bhattacharyya DK. EnsemBic: An effective ensemble of biclustering to identify potential biomarkers of esophageal squamous cell carcinoma. Comput Biol Chem 2024; 110:108090. [PMID: 38759483 DOI: 10.1016/j.compbiolchem.2024.108090] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2023] [Revised: 03/28/2024] [Accepted: 04/29/2024] [Indexed: 05/19/2024]
Abstract
The development of functionally enriched and biologically competent biclustering algorithm is essential for extracting hidden information from massive biological datasets. This paper presents a novel biclustering ensemble called EnsemBic based on p-value, which calculates the functional similarity of genetic associations. To validate the effectiveness and robustness of EnsemBic, we apply three well-known biclustering techniques, viz. Laplace Prior, iBBiG, and xMotif to implement EnsemBic and have been compared using different leading parameters. It is observed that the EnsemBic outperforms its competing algorithms in several prominent functional and biological measures. Next, the biclusters obtained from EnsemBic are used to identify potential biomarkers of Esophageal Squamous Cell Carcinoma (ESCC) by exploring topological and biological relevance with reference to the elite genes, attained from genecards. Finally, we discover that the genes F2RL3, APPL1, CALM1, IFNGR1, LPAR1, ANGPT2, ARPC2, CGN, CLDN7, ATP6V1C2, CEACAM1, FTL, PLAU,PSMB4, and EPHB2 carry both the topological and biological significance of previously established ESCC elite genes. Therefore, we declare the aforementioned genes as potential biomarkers of ESCC.
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Affiliation(s)
- Bikash Baruah
- Dept. of Computer Science and Engineering, NIT Arunachal Pradesh, India
| | - Manash P Dutta
- Dept. of Computer Science & Information Technology, Cotton University, Guwahati, Assam, India.
| | | | - Dhruba K Bhattacharyya
- Dept. of Computer Science and Engineering, Tezpur University, School of Engineering, Tezpur, India
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Trivedi P, Shah J, Moslem S, Pilla F. An application of the hybrid AHP-PROMETHEE approach to evaluate the severity of the factors influencing road accidents. Heliyon 2023; 9:e21187. [PMID: 37928046 PMCID: PMC10623276 DOI: 10.1016/j.heliyon.2023.e21187] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2023] [Revised: 10/15/2023] [Accepted: 10/18/2023] [Indexed: 11/07/2023] Open
Abstract
The evaluation of the severity of the factors influencing road accidents with a detailed severity distribution is critical to plan evidence-based road safety improvements and strategies. However, currently available studies use statistical and machine learning (ML) models to evaluate the severity of factors causing road accidents without a detailed severity distribution. Further, most of these available models require significant pre-data processing and have certain data-centric limitations. However, the multi criteria decision-making (MCDM) techniques have the potential to combine expert opinions for robust analysis without any pre-data processing calculations. Thus, this study uses a hybrid analytic hierarchy process (AHP) and the preference ranking organisation method for enrichment evaluation (PROMETHEE) approach to analyse the severity of factors and characteristics that influence road accidents within the Gujarat state, using injury types as criteria and minor road accident influencing factors as alternatives. These 82 minor factors have been further characterised into 18 characteristics and 4 major factors. Further, AHP integrated 40 expert inputs to determine criterion weights, while PROMETHEE ranked all minor variables. Then, after applying k-mean clustering, each ranked factor has been classified as very severe, moderately severe, or severe. The result clearly highlights that overspeeding, male gender, and clear weather conditions have been concluded to be the highly severe factors for Gujarat state. Thus, by providing a clear severity analysis and distribution of factors influencing road accidents, the proposed research may help government stakeholders, researchers, and politicians build severity-based road safety reforms and strategies with clarity.
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Affiliation(s)
- Priyank Trivedi
- Civil Engineering Department, Institute of Infrastructure Technology Research and Management, [IITRAM], Ahmedabad, India
| | - Jiten Shah
- Civil Engineering Department, Institute of Infrastructure Technology Research and Management, [IITRAM], Ahmedabad, India
| | - Sarbast Moslem
- School of Architecture Planning and Environmental Policy, University College of Dublin, D04 V1W8, Belfield, Dublin, Ireland
| | - Francesco Pilla
- School of Architecture Planning and Environmental Policy, University College of Dublin, D04 V1W8, Belfield, Dublin, Ireland
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Tabatabaian F, Vora SR, Mirabbasi S. Applications, functions, and accuracy of artificial intelligence in restorative dentistry: A literature review. J ESTHET RESTOR DENT 2023; 35:842-859. [PMID: 37522291 DOI: 10.1111/jerd.13079] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2023] [Revised: 06/18/2023] [Accepted: 06/19/2023] [Indexed: 08/01/2023]
Abstract
OBJECTIVE The applications of artificial intelligence (AI) are increasing in restorative dentistry; however, the AI performance is unclear for dental professionals. The purpose of this narrative review was to evaluate the applications, functions, and accuracy of AI in diverse aspects of restorative dentistry including caries detection, tooth preparation margin detection, tooth restoration design, metal structure casting, dental restoration/implant detection, removable partial denture design, and tooth shade determination. OVERVIEW An electronic search was performed on Medline/PubMed, Embase, Web of Science, Cochrane, Scopus, and Google Scholar databases. English-language articles, published from January 1, 2000, to March 1, 2022, relevant to the aforementioned aspects were selected using the key terms of artificial intelligence, machine learning, deep learning, artificial neural networks, convolutional neural networks, clustering, soft computing, automated planning, computational learning, computer vision, and automated reasoning as inclusion criteria. A manual search was also performed. Therefore, 157 articles were included, reviewed, and discussed. CONCLUSIONS Based on the current literature, the AI models have shown promising performance in the mentioned aspects when being compared with traditional approaches in terms of accuracy; however, as these models are still in development, more studies are required to validate their accuracy and apply them to routine clinical practice. CLINICAL SIGNIFICANCE AI with its specific functions has shown successful applications with acceptable accuracy in diverse aspects of restorative dentistry. The understanding of these functions may lead to novel applications with optimal accuracy for AI in restorative dentistry.
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Affiliation(s)
- Farhad Tabatabaian
- Department of Oral Health Sciences, Faculty of Dentistry, The University of British Columbia, Vancouver, British Columbia, Canada
| | - Siddharth R Vora
- Department of Oral Health Sciences, Faculty of Dentistry, The University of British Columbia, Vancouver, British Columbia, Canada
| | - Shahriar Mirabbasi
- Department of Electrical and Computer Engineering, Faculty of Applied Science, The University of British Columbia, Vancouver, British Columbia, Canada
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Steyaert S, Lootus M, Sarabu C, Framroze Z, Dickinson H, Lewis E, Steels JC, Rinaldo F. A decentralized, prospective, observational study to collect real-world data from patients with myasthenia gravis using smartphones. Front Neurol 2023; 14:1144183. [PMID: 37588667 PMCID: PMC10427188 DOI: 10.3389/fneur.2023.1144183] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2023] [Accepted: 07/17/2023] [Indexed: 08/18/2023] Open
Abstract
Introduction We conducted a 3-month, prospective study in a population of patients with Myasthenia Gravis (MG), utilizing a fully decentralized approach for recruitment and monitoring (ClinicalTrials.gov Identifier: NCT04590716). The study objectives were to assess the feasibility of collecting real-world data through a smartphone-based research platform, in order to characterize symptom involvement during MG exacerbations. Methods Primary data collection included daily electronically recorded patient-reported outcomes (ePROs) on the presence of MG symptoms, the level of symptom severity (using the MG-Activities of Daily Living assessment, MG-ADL), and exacerbation status. Participants were also given the option to contribute data on their physical activity levels from their own wearable devices. Results The study enrolled and onboarded 113 participants across 37 US states, and 73% (N= 82) completed the study. The mean age of participants was 53.6 years, 60% were female. Participants were representative of a moderate to severe MG phenotype, with frequent exacerbations, high symptom burden and multiple comorbidities. 55% of participants (N=45) reported MG exacerbations during the study, with an average of 6.3 exacerbation days per participant. Median average MG-ADL scores for participants during self-reported exacerbation and non-exacerbation periods were 7 (interquartile range 4-9, range 1-19) and 0.3 (interquartile range 0-0.8, range 0-9), respectively. Analyses examining relationships between patient-reported and patient-generated health data streams and exacerbation status demonstrated concordance between self-reported MG-ADL scores and exacerbation status, and identified features that may be used to understand and predict the onset of MG symptom exacerbations, including: 1.) dynamic changes in day-to-day symptom reporting and severity 2.) daily step counts as a measure of physical activity and 3.) clinical characteristics of the patient, including the amount of time since their initial diagnosis and their active medications related to MG treatment. Finally, application of unsupervised machine learning methods identified unique clusters of exacerbation subtypes, each with their own specific representation of symptoms and symptom severity. Conclusion While these symptom signatures require further study and validation, our results suggest that digital phenotyping, characterized by increased multidimensionality and frequency of the data collection, holds promise for furthering our understanding of clinically significant exacerbations and reimagining the approach to treating MG as a heterogeneous condition.
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Affiliation(s)
- Sandra Steyaert
- Sharecare, Inc., Atlanta, GA, United States
- Stanford University, Center for Bioinformatics Research, Palo Alto, Santa Clara, CA, United States
| | | | | | | | | | - Emily Lewis
- UCB S.A. (Headquarters) Allée de la Recherche, Brussels, Belgium
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Abstract
This study analyses the main challenges, trends, technological approaches, and artificial intelligence methods developed by new researchers and professionals in the field of machine learning, with an emphasis on the most outstanding and relevant works to date. This literature review evaluates the main methodological contributions of artificial intelligence through machine learning. The methodology used to study the documents was content analysis; the basic terminology of the study corresponds to machine learning, artificial intelligence, and big data between the years 2017 and 2021. For this study, we selected 181 references, of which 120 are part of the literature review. The conceptual framework includes 12 categories, four groups, and eight subgroups. The study of data management using AI methodologies presents symmetry in the four machine learning groups: supervised learning, unsupervised learning, semi-supervised learning, and reinforced learning. Furthermore, the artificial intelligence methods with more symmetry in all groups are artificial neural networks, Support Vector Machines, K-means, and Bayesian Methods. Finally, five research avenues are presented to improve the prediction of machine learning.
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Rebelo HD, de Oliveira LA, Almeida GM, Sotomayor CA, Rochocz GL, Melo WE. Intent Identification in Unattended Customer Queries Using an Unsupervised Approach. JOURNAL OF INFORMATION & KNOWLEDGE MANAGEMENT 2021. [DOI: 10.1142/s0219649221500374] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Customer’s satisfaction is crucial for companies worldwide. An integrated strategy composes omnichannel communication systems, in which chabot is widely used. This system is supervised, and the key point is that the required training data are originally unlabelled. Labelling data manually is unfeasible mainly nowadays due to the considerable volume. Moreover, customer behaviour is often hidden in the data even for experts. This work proposes a methodology to find unknown entities and intents automatically using unsupervised learning. This is based on natural language processing (NLP) for text data preparation and on machine learning (ML) for clustering model identification. Several combinations for preprocessing, vectorisation, dimensionality reduction and clustering techniques, were investigated. The case study refers to a Brazilian electric energy company, with a data set of failed customer queries, that is, not met by the company for any reason. They correspond to about 30% (4,044 queries) of the original data set. The best identified intent model employed stemming for preprocessing, word frequency analysis for vectorisation, latent Dirichlet allocation (LDA) for dimensionality reduction, and mini-batch [Formula: see text]-means for clustering. This system was able to allocate 62% of the failed queries in one of the seven found intents. For instance, this new labelled data can be used for the training of NLP-based chatbots contributing to a greater generalisation capacity, and ultimately, to increase customer satisfaction.
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Affiliation(s)
- Hugo D. Rebelo
- Radix – Engineering and Software, Passeio Corporate, R. do Passeio, 38, Tower 2, Centro, Rio de Janeiro 20021-290, RJ, Brazil
| | - Lucas A. F. de Oliveira
- Radix – Engineering and Software, R. Santa Rita Durão, 444, Funcionários, Belo Horizonte 30140-110, MG, Brazil
| | - Gustavo M. Almeida
- Department of Chemical Engineering, School of Engineering, Federal University of Minas Gerais, Av. Antonio Carlos, 6627, Pampulha, Belo Horizonte 31270-901, MG, Brazil
| | - César A. M. Sotomayor
- Radix – Engineering and Software, Passeio Corporate, R. do Passeio, 38, Tower 2, Centro, Rio de Janeiro 20021-290, RJ, Brazil
| | - Geraldo L. Rochocz
- Radix – Engineering and Software, Passeio Corporate, R. do Passeio, 38, Tower 2, Centro, Rio de Janeiro 20021-290, RJ, Brazil
| | - Willian E. D. Melo
- Cemig Distribution S/A, Av. Barbacena, 1200, Santo Agostinho, Belo Horizonte 30190-924, MG, Brazil
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Xie J, Xiong ZY, Dai QZ, Wang XX, Zhang YF. A new internal index based on density core for clustering validation. Inf Sci (N Y) 2020. [DOI: 10.1016/j.ins.2019.08.029] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Luna-Romera JM, Martínez-Ballesteros M, García-Gutiérrez J, Riquelme JC. External clustering validity index based on chi-squared statistical test. Inf Sci (N Y) 2019. [DOI: 10.1016/j.ins.2019.02.046] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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