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Shimizu H, Enda K, Koyano H, Shimizu T, Shimodan S, Sato K, Ogawa T, Tanaka S, Iwasaki N, Takahashi D. Bimodal machine learning model for unstable hips in infants: integration of radiographic images with automatically-generated clinical measurements. Sci Rep 2024; 14:17826. [PMID: 39090235 PMCID: PMC11294347 DOI: 10.1038/s41598-024-68484-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2023] [Accepted: 07/24/2024] [Indexed: 08/04/2024] Open
Abstract
Bimodal convolutional neural networks (CNNs) are frequently combined with patient information or several medical images to enhance the diagnostic performance. However, the technologies that integrate automatically generated clinical measurements within the images are scarce. Hence, we developed a bimodal model that produced automatic algorithm for clinical measurement (aaCM) from radiographic images and integrated the model with CNNs. In this multicenter research project, the diagnostic performance of the model was investigated with 813 radiographic hip images of infants at risk of developmental dysplasia of the hips (232 and 581 images of unstable and stable hips, respectively), with the ground truth defined by provocative examinations. The results indicated that the accuracy of aaCM was equal or higher than that of specialists, and the bimodal model showed better diagnostic performance than LightGBM, XGBoost, SVM, and single CNN models. aaCM can provide expert's knowledge in a high level, and our proposed bimodal model has better performance than the state-of-art models.
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Affiliation(s)
- Hirokazu Shimizu
- Department of Orthopaedic Surgery, Faculty of Medicine and Graduate School of Medicine, Hokkaido University, Sapporo, Hokkaido, Japan
- Department of Cancer Pathology, Faculty of Medicine and Graduate School of Medicine, Hokkaido University, Sapporo, Hokkaido, Japan
| | - Ken Enda
- Department of Cancer Pathology, Faculty of Medicine and Graduate School of Medicine, Hokkaido University, Sapporo, Hokkaido, Japan
| | - Hidenori Koyano
- Graduate School of Biomedical Science and Engineering, Hokkaido University, Sapporo, Hokkaido, Japan
| | - Tomohiro Shimizu
- Department of Orthopaedic Surgery, Faculty of Medicine and Graduate School of Medicine, Hokkaido University, Sapporo, Hokkaido, Japan
| | - Shun Shimodan
- Department of Orthopaedic Surgery, Kushiro City General Hospital, Kushiro, Hokkaido, Japan
| | - Komei Sato
- Department of Orthopaedic Surgery, Faculty of Medicine and Graduate School of Medicine, Hokkaido University, Sapporo, Hokkaido, Japan
| | - Takuya Ogawa
- Department of Orthopaedic Surgery, Faculty of Medicine and Graduate School of Medicine, Hokkaido University, Sapporo, Hokkaido, Japan
| | - Shinya Tanaka
- Department of Cancer Pathology, Faculty of Medicine and Graduate School of Medicine, Hokkaido University, Sapporo, Hokkaido, Japan
- Institute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University, Sapporo, Hokkaido, Japan
| | - Norimasa Iwasaki
- Department of Orthopaedic Surgery, Faculty of Medicine and Graduate School of Medicine, Hokkaido University, Sapporo, Hokkaido, Japan
| | - Daisuke Takahashi
- Department of Orthopaedic Surgery, Faculty of Medicine and Graduate School of Medicine, Hokkaido University, Sapporo, Hokkaido, Japan.
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Spadaccini M, Troya J, Khalaf K, Facciorusso A, Maselli R, Hann A, Repici A. Artificial Intelligence-assisted colonoscopy and colorectal cancer screening: Where are we going? Dig Liver Dis 2024; 56:1148-1155. [PMID: 38458884 DOI: 10.1016/j.dld.2024.01.203] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/12/2023] [Revised: 01/22/2024] [Accepted: 01/23/2024] [Indexed: 03/10/2024]
Abstract
Colorectal cancer is a significant global health concern, necessitating effective screening strategies to reduce its incidence and mortality rates. Colonoscopy plays a crucial role in the detection and removal of colorectal neoplastic precursors. However, there are limitations and variations in the performance of endoscopists, leading to missed lesions and suboptimal outcomes. The emergence of artificial intelligence (AI) in endoscopy offers promising opportunities to improve the quality and efficacy of screening colonoscopies. In particular, AI applications, including computer-aided detection (CADe) and computer-aided characterization (CADx), have demonstrated the potential to enhance adenoma detection and optical diagnosis accuracy. Additionally, AI-assisted quality control systems aim to standardize the endoscopic examination process. This narrative review provides an overview of AI principles and discusses the current knowledge on AI-assisted endoscopy in the context of screening colonoscopies. It highlights the significant role of AI in improving lesion detection, characterization, and quality assurance during colonoscopy. However, further well-designed studies are needed to validate the clinical impact and cost-effectiveness of AI-assisted colonoscopy before its widespread implementation.
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Affiliation(s)
- Marco Spadaccini
- Department of Endoscopy, Humanitas Research Hospital, IRCCS, 20089 Rozzano, Italy; Department of Biomedical Sciences, Humanitas University, 20089 Rozzano, Italy.
| | - Joel Troya
- Interventional and Experimental Endoscopy (InExEn), Department of Internal Medicine II, University Hospital Würzburg, Würzburg, Germany
| | - Kareem Khalaf
- Division of Gastroenterology, St. Michael's Hospital, University of Toronto, Toronto, Canada
| | - Antonio Facciorusso
- Gastroenterology Unit, Department of Surgical and Medical Sciences, University of Foggia, Foggia, Italy
| | - Roberta Maselli
- Department of Endoscopy, Humanitas Research Hospital, IRCCS, 20089 Rozzano, Italy; Department of Biomedical Sciences, Humanitas University, 20089 Rozzano, Italy
| | - Alexander Hann
- Interventional and Experimental Endoscopy (InExEn), Department of Internal Medicine II, University Hospital Würzburg, Würzburg, Germany
| | - Alessandro Repici
- Department of Endoscopy, Humanitas Research Hospital, IRCCS, 20089 Rozzano, Italy; Department of Biomedical Sciences, Humanitas University, 20089 Rozzano, Italy
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Selle M, Kircher M, Schwennen C, Visscher C, Jung K. Dimension reduction and outlier detection of 3-D shapes derived from multi-organ CT images. BMC Med Inform Decis Mak 2024; 24:49. [PMID: 38355504 PMCID: PMC10865689 DOI: 10.1186/s12911-024-02457-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2023] [Accepted: 02/08/2024] [Indexed: 02/16/2024] Open
Abstract
BACKGROUND Unsupervised clustering and outlier detection are important in medical research to understand the distributional composition of a collective of patients. A number of clustering methods exist, also for high-dimensional data after dimension reduction. Clustering and outlier detection may, however, become less robust or contradictory if multiple high-dimensional data sets per patient exist. Such a scenario is given when the focus is on 3-D data of multiple organs per patient, and a high-dimensional feature matrix per organ is extracted. METHODS We use principal component analysis (PCA), t-distributed stochastic neighbor embedding (t-SNE) and multiple co-inertia analysis (MCIA) combined with bagplots to study the distribution of multi-organ 3-D data taken by computed tomography scans. After point-set registration of multiple organs from two public data sets, multiple hundred shape features are extracted per organ. While PCA and t-SNE can only be applied to each organ individually, MCIA can project the data of all organs into the same low-dimensional space. RESULTS MCIA is the only approach, here, with which data of all organs can be projected into the same low-dimensional space. We studied how frequently (i.e., by how many organs) a patient was classified to belong to the inner or outer 50% of the population, or as an outlier. Outliers could only be detected with MCIA and PCA. MCIA and t-SNE were more robust in judging the distributional location of a patient in contrast to PCA. CONCLUSIONS MCIA is more appropriate and robust in judging the distributional location of a patient in the case of multiple high-dimensional data sets per patient. It is still recommendable to apply PCA or t-SNE in parallel to MCIA to study the location of individual organs.
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Affiliation(s)
- Michael Selle
- Institute of Animal Genomics, University of Veterinary Medicine Hannover, Hannover, Germany.
| | - Magdalena Kircher
- Institute of Animal Genomics, University of Veterinary Medicine Hannover, Hannover, Germany
| | - Cornelia Schwennen
- Institute for Animal Nutrition, University of Veterinary Medicine Hannover, Hannover, Germany
| | - Christian Visscher
- Institute for Animal Nutrition, University of Veterinary Medicine Hannover, Hannover, Germany
| | - Klaus Jung
- Institute of Animal Genomics, University of Veterinary Medicine Hannover, Hannover, Germany.
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Kita K, Fujimori T, Suzuki Y, Kanie Y, Takenaka S, Kaito T, Taki T, Ukon Y, Furuya M, Saiwai H, Nakajima N, Sugiura T, Ishiguro H, Kamatani T, Tsukazaki H, Sakai Y, Takami H, Tateiwa D, Hashimoto K, Wataya T, Nishigaki D, Sato J, Hoshiyama M, Tomiyama N, Okada S, Kido S. Bimodal artificial intelligence using TabNet for differentiating spinal cord tumors-Integration of patient background information and images. iScience 2023; 26:107900. [PMID: 37766987 PMCID: PMC10520519 DOI: 10.1016/j.isci.2023.107900] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2022] [Revised: 02/18/2023] [Accepted: 09/08/2023] [Indexed: 09/29/2023] Open
Abstract
We proposed a bimodal artificial intelligence that integrates patient information with images to diagnose spinal cord tumors. Our model combines TabNet, a state-of-the-art deep learning model for tabular data for patient information, and a convolutional neural network for images. As training data, we collected 259 spinal tumor patients (158 for schwannoma and 101 for meningioma). We compared the performance of the image-only unimodal model, table-only unimodal model, bimodal model using a gradient-boosting decision tree, and bimodal model using TabNet. Our proposed bimodal model using TabNet performed best (area under the receiver-operating characteristic curve [AUROC]: 0.91) in the training data and significantly outperformed the physicians' performance. In the external validation using 62 cases from the other two facilities, our bimodal model showed an AUROC of 0.92, proving the robustness of the model. The bimodal analysis using TabNet was effective for differentiating spinal tumors.
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Affiliation(s)
- Kosuke Kita
- Osaka University School of Medicine Graduate School of Medicine Diagnostic and Interventional Radiology, Suita, Osaka, Japan
| | - Takahito Fujimori
- Osaka University Graduate School of Medicine Department of Orthopaedic Surgery, Suita, Osaka, Japan
| | - Yuki Suzuki
- Osaka University School of Medicine Graduate School of Medicine Diagnostic and Interventional Radiology, Suita, Osaka, Japan
| | - Yuya Kanie
- Osaka University Graduate School of Medicine Department of Orthopaedic Surgery, Suita, Osaka, Japan
| | - Shota Takenaka
- Osaka University Graduate School of Medicine Department of Orthopaedic Surgery, Suita, Osaka, Japan
| | - Takashi Kaito
- Osaka University Graduate School of Medicine Department of Orthopaedic Surgery, Suita, Osaka, Japan
| | - Takuyu Taki
- Department of Neurosurgery, Iseikai Hospital, Osaka, Osaka, Japan
| | - Yuichiro Ukon
- Osaka University Graduate School of Medicine Department of Orthopaedic Surgery, Suita, Osaka, Japan
| | | | - Hirokazu Saiwai
- Department of Orthopedic Surgery, Graduate School of Medical Sciences, Kyusyu University, Higashi, Fukuoka, Japan
| | - Nozomu Nakajima
- Japanese Red Cross Society Himeji Hospital, Himeji, Hyogo, Japan
| | - Tsuyoshi Sugiura
- General Incorporated Foundation Sumitomo Hospital, Osaka, Osaka, Japan
| | - Hiroyuki Ishiguro
- National Hospital Organization Osaka National Hospital, Osaka, Osaka, Japan
| | | | | | | | - Haruna Takami
- Osaka International Cancer Institute, Osaka, Osaka, Japan
| | | | | | - Tomohiro Wataya
- Osaka University School of Medicine Graduate School of Medicine Diagnostic and Interventional Radiology, Suita, Osaka, Japan
| | - Daiki Nishigaki
- Osaka University School of Medicine Graduate School of Medicine Diagnostic and Interventional Radiology, Suita, Osaka, Japan
| | - Junya Sato
- Osaka University School of Medicine Graduate School of Medicine Diagnostic and Interventional Radiology, Suita, Osaka, Japan
| | | | - Noriyuki Tomiyama
- Osaka University School of Medicine Graduate School of Medicine Diagnostic and Interventional Radiology, Suita, Osaka, Japan
| | - Seiji Okada
- Osaka University Graduate School of Medicine Department of Orthopaedic Surgery, Suita, Osaka, Japan
| | - Shoji Kido
- Osaka University School of Medicine Graduate School of Medicine Diagnostic and Interventional Radiology, Suita, Osaka, Japan
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Gomes R, Kamrowski C, Langlois J, Rozario P, Dircks I, Grottodden K, Martinez M, Tee WZ, Sargeant K, LaFleur C, Haley M. A Comprehensive Review of Machine Learning Used to Combat COVID-19. Diagnostics (Basel) 2022; 12:1853. [PMID: 36010204 PMCID: PMC9406981 DOI: 10.3390/diagnostics12081853] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2022] [Revised: 07/22/2022] [Accepted: 07/26/2022] [Indexed: 12/19/2022] Open
Abstract
Coronavirus disease (COVID-19) has had a significant impact on global health since the start of the pandemic in 2019. As of June 2022, over 539 million cases have been confirmed worldwide with over 6.3 million deaths as a result. Artificial Intelligence (AI) solutions such as machine learning and deep learning have played a major part in this pandemic for the diagnosis and treatment of COVID-19. In this research, we review these modern tools deployed to solve a variety of complex problems. We explore research that focused on analyzing medical images using AI models for identification, classification, and tissue segmentation of the disease. We also explore prognostic models that were developed to predict health outcomes and optimize the allocation of scarce medical resources. Longitudinal studies were conducted to better understand COVID-19 and its effects on patients over a period of time. This comprehensive review of the different AI methods and modeling efforts will shed light on the role that AI has played and what path it intends to take in the fight against COVID-19.
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Affiliation(s)
- Rahul Gomes
- Department of Computer Science, University of Wisconsin-Eau Claire, Eau Claire, WI 54701, USA; (C.K.); (J.L.); (I.D.); (K.G.); (M.M.); (W.Z.T.); (K.S.); (C.L.); (M.H.)
| | - Connor Kamrowski
- Department of Computer Science, University of Wisconsin-Eau Claire, Eau Claire, WI 54701, USA; (C.K.); (J.L.); (I.D.); (K.G.); (M.M.); (W.Z.T.); (K.S.); (C.L.); (M.H.)
| | - Jordan Langlois
- Department of Computer Science, University of Wisconsin-Eau Claire, Eau Claire, WI 54701, USA; (C.K.); (J.L.); (I.D.); (K.G.); (M.M.); (W.Z.T.); (K.S.); (C.L.); (M.H.)
| | - Papia Rozario
- Department of Geography and Anthropology, University of Wisconsin-Eau Claire, Eau Claire, WI 54701, USA;
| | - Ian Dircks
- Department of Computer Science, University of Wisconsin-Eau Claire, Eau Claire, WI 54701, USA; (C.K.); (J.L.); (I.D.); (K.G.); (M.M.); (W.Z.T.); (K.S.); (C.L.); (M.H.)
| | - Keegan Grottodden
- Department of Computer Science, University of Wisconsin-Eau Claire, Eau Claire, WI 54701, USA; (C.K.); (J.L.); (I.D.); (K.G.); (M.M.); (W.Z.T.); (K.S.); (C.L.); (M.H.)
| | - Matthew Martinez
- Department of Computer Science, University of Wisconsin-Eau Claire, Eau Claire, WI 54701, USA; (C.K.); (J.L.); (I.D.); (K.G.); (M.M.); (W.Z.T.); (K.S.); (C.L.); (M.H.)
| | - Wei Zhong Tee
- Department of Computer Science, University of Wisconsin-Eau Claire, Eau Claire, WI 54701, USA; (C.K.); (J.L.); (I.D.); (K.G.); (M.M.); (W.Z.T.); (K.S.); (C.L.); (M.H.)
| | - Kyle Sargeant
- Department of Computer Science, University of Wisconsin-Eau Claire, Eau Claire, WI 54701, USA; (C.K.); (J.L.); (I.D.); (K.G.); (M.M.); (W.Z.T.); (K.S.); (C.L.); (M.H.)
| | - Corbin LaFleur
- Department of Computer Science, University of Wisconsin-Eau Claire, Eau Claire, WI 54701, USA; (C.K.); (J.L.); (I.D.); (K.G.); (M.M.); (W.Z.T.); (K.S.); (C.L.); (M.H.)
| | - Mitchell Haley
- Department of Computer Science, University of Wisconsin-Eau Claire, Eau Claire, WI 54701, USA; (C.K.); (J.L.); (I.D.); (K.G.); (M.M.); (W.Z.T.); (K.S.); (C.L.); (M.H.)
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