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Chen L, Zhu S, Zhao L, Ye W. Identification of exosome-related gene features in psoriasis and construction of a diagnostic model via integrated bioinformatics analysis. Comput Methods Biomech Biomed Engin 2024:1-12. [PMID: 39358990 DOI: 10.1080/10255842.2024.2410224] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2024] [Revised: 09/11/2024] [Accepted: 09/20/2024] [Indexed: 10/04/2024]
Abstract
BACKGROUND Psoriasis, a chronic inflammatory dermatosis, profoundly affects patients' well-being. Although exosomes are key in disease etiology, diagnostic potentials of associated genes are unclear. Our research targeted bioinformatics-based characterization of exosome-related genes and the development of a diagnostic model for psoriasis. METHODS Within GSE30999 dataset, an exosome-centric diagnostic model was formulated. Its diagnostic capability was appraised in GSE30999 and GSE14905 cohorts. Human keratinocytes (HaCaT) were used to construct psoriasis cell model. qRT-PCR was used to detect expression of diagnostic genes in the model. Construction of a protein-protein interaction network was undertaken, complemented by enrichment analyses. Comparative evaluation of immunological microenvironments between healthy controls and disease cohort was executed. Prospective miRNAs and transcription factors (TFs) were prognosticated using online prediction tools. RESULTS A distinctive diagnostic model with superior diagnostic performance, evidenced by an AUC value greater than 0.88, was unveiled. The model featured seven exosome-related biomarker genes (CCNA2, NDC80, CCNB1, CDCA8, KIF11, CENPF, and ASPM) interwoven in a complex network and chiefly linked in the regulation of Cell Cycle and Cellular Senescence. These genes were significantly overexpressed in psoriasis cell models. Immune infiltration analysis distinguished profound discrepancies (p < 0.05) in immunological microenvironment between disease and control groups with enrichment of T cells CD4 memory activated, Macrophages M1, and Neutrophils in the disease group. 11 miRNAs and 27 TFs were identified. CONCLUSION The study introduces a new and potent diagnostic model for psoriasis, with selection of credible exosome-associated biomarker genes. These discoveries aid in clinical diagnostics and research on exosome involvement in psoriasis.
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Affiliation(s)
- Lifen Chen
- Department of Clinical Laboratory, Lishui People's Hospital, Lishui City, Zhejiang Province, China
| | - Shuangmei Zhu
- Department of Radiation Oncology, Lishui People's Hospital, Lishui City, Zhejiang Province, China
| | - Lu Zhao
- Department of Ultrasound, Lishui People's Hospital, Lishui City, Zhejiang Province, China
| | - Wenxia Ye
- Department of Dermatology, Lishui People's Hospital, Lishui City, Zhejiang Province, China
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Dwivedi P, Malik A, Fatima Hussain HZ, Jatrana I, Imtiyaz K, Rizvi MA, Mushtaque M, Khan AU, Alam M, Rafatullah M. Eco-Friendly CuO/Fe 3O 4 Nanocomposite synthesis, characterization, and cytotoxicity study. Heliyon 2024; 10:e27787. [PMID: 38496878 PMCID: PMC10944281 DOI: 10.1016/j.heliyon.2024.e27787] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2023] [Revised: 02/16/2024] [Accepted: 03/06/2024] [Indexed: 03/19/2024] Open
Abstract
The current study report a convenient, simple, and low cost approach for the biogenic synthesis of CuO/Fe3O4 nanocomposites (NCs) from pumpkin seeds extract and their vitro cytotoxicity. The characterization of finally obtained CuO/Fe3O4 nanocomposites (NCs) performed using UV-Visible, FT-IR, XRD, XPS, GC-MS, SEM-EDX and TEM analysis. The formation and elemental analysis were determined using the energy-dispersive X-ray (EDX) microanalysis technique. The formation of rod-like monoclinic and spherical, having size range 5 nm-20 nm confirmed by scanning electron microscope (SEM) and transmission electron microscopy (TEM) respectively. Finally, the MTT assay of the synthesized composites was evaluated for toxicity against cancerous cell lines HCT-116 (Colon cancer cell) and A549 (human lung adenocarcinoma cell). The synthesized composite material showed moderate (IC50 = 199 μg/mL) to low (IC50 = 445 μg/mL) activity against HCT-116 and A549 cell lines, respectively.
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Affiliation(s)
- Poonam Dwivedi
- Department of Chemistry, School of Basic Sciences, Jaipur National University, Jaipur, 302017 (Rajasthan) India
| | - Abdul Malik
- Department of Pharmaceutics, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia
| | - Hafiza Zumra Fatima Hussain
- Department of Environmental, Biological and Pharmaceutical Science and Technology (DISTABiF), University of Campania ‘Luigi Vanvitelli’ Via Vivaldi 43, 81100 Caserta, Italy
| | - Indu Jatrana
- Department of Chemistry, School of Basic Sciences, Jaipur National University, Jaipur, 302017 (Rajasthan) India
| | - Khalid Imtiyaz
- Department of Biosciences, Jamia Millia Islamia, New Delhi, 110025, India
| | - M.M. Alam Rizvi
- Department of Biosciences, Jamia Millia Islamia, New Delhi, 110025, India
| | - Md Mushtaque
- Department of Chemistry, Millat College (A constituent colle ge of Lalit Narayan Mithila University), Darbhanga, Bihar, India
| | - Azhar U. Khan
- Department of Chemistry, School of Basic Sciences, Jaipur National University, Jaipur, 302017 (Rajasthan) India
| | - Mahboob Alam
- Division of Chemistry and Biotechnology, Dongguk University, 123, Dongdaero, Gyeongju-si 780714, Republic of Korea
| | - Mohd Rafatullah
- Environmental Technology Division, School of Industrial Technology, Universiti Sains Malaysia, 11800 Penang, Malaysia
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Na-Bangchang K, Teerachaisakul M, Muhamad P, Kasemnitichok Y, Sangnarong N, Boonprasert K, Tarasuk M, Plengsuriyakarn T. Antiproliferative and Anti-Inflammatory Activities of Deprungsith Formulation and Its Bioactive Compounds Against Mild Psoriasis and Potential of Metabolic Herb-Drug Interactions. J Evid Based Integr Med 2023; 28:2515690X231191101. [PMID: 37553989 PMCID: PMC10413907 DOI: 10.1177/2515690x231191101] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2023] [Revised: 05/09/2023] [Accepted: 06/24/2023] [Indexed: 08/10/2023] Open
Abstract
Psoriasis is an incurable, chronic and auto-immune skin disorder with a global prevalence rate of approximately 2-3%. The study investigated the antipsoriasis activities of Deprungsith formulation and its bioactive components and their potential for inhibitory activities on human cytochrome P450 (CYP450). HaCaT and peripheral blood mononuclear cells (PBMCs) from healthy volunteers (n = 9) and psoriasis patients (n = 10) were exposed to Deprungsith formulation (Thai traditional medicine for psoriasis consisting of 16 plants), ethyl p-methoxycinnamate (EPMC), ligustilide and cyclosporin for 24 and 48 h. The antiproliferative, cell apoptosis and cell cycle arrest activities were evaluated using MTT assay and flow cytometry, respectively. The pro-inflammatory cytokine mRNA expression levels were measured using real-time polymerase chain reaction (RT-PCR). The CYP450 inhibitory effect was investigated using a bioluminescent-based CYP450 assay. Deprungsith formulation and the bioactive compounds inhibited HaCaT cells and PBMCs with weak to moderate potencies. EPMC and ligustilide combination produced an additive effect. Most substances arrested cell transition at sub-G1 and S phases, leading to early and late apoptosis induction. With prolonged exposure (48 h), all test substances decreased PBMCs necrosis. The mRNA expression of all pro-inflammatory cytokines was downregulated. Deprungsith formulation, EPMC, ligustilide and ferulic acid inhibited CYP1A2, CYP2C9, CYP2D6 and CYP3A4 activities with weak to moderate potencies. Deprungsith formulation and bioactive components induced cell apoptosis by inhibiting cell transition at specific cell cycle phases, which was correlated with the mRNA downregulation of interleukin (IL-6, IL-12p19, IL-23) and tumor necrosis factor (TNF-α). There is a low risk of potential adverse drug reactions and toxicity due to CYP450 interaction when Deprungsith formulation is concurrently administered with modern medicines.
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Affiliation(s)
- Kesara Na-Bangchang
- Graduate Program in Bioclinical Sciences, Chulabhorn International College of Medicine, Thammasat University (Rangsit Campus), Pathumthani, Thailand
- Center of Excellence in Pharmacology and Molecular Biology of Malaria and Cholangiocarcinoma, Thammasat University (Rangsit Campus), Pathumthani, Thailand
- Drug Discovery and Development Center, Office of Advanced Science and Technology, Thammasat University (Rangsit Campus), Pathumthani, Thailand
| | - Monthaka Teerachaisakul
- Department of Thai Traditional and Alternative Medicine, Ministry of Public Health, Nonthaburi, Thailand
| | - Phunuch Muhamad
- Drug Discovery and Development Center, Office of Advanced Science and Technology, Thammasat University (Rangsit Campus), Pathumthani, Thailand
| | - Yositha Kasemnitichok
- Graduate Program in Bioclinical Sciences, Chulabhorn International College of Medicine, Thammasat University (Rangsit Campus), Pathumthani, Thailand
| | - Nattida Sangnarong
- Center of Excellence in Pharmacology and Molecular Biology of Malaria and Cholangiocarcinoma, Thammasat University (Rangsit Campus), Pathumthani, Thailand
| | - Kanyarat Boonprasert
- Graduate Program in Bioclinical Sciences, Chulabhorn International College of Medicine, Thammasat University (Rangsit Campus), Pathumthani, Thailand
- Center of Excellence in Pharmacology and Molecular Biology of Malaria and Cholangiocarcinoma, Thammasat University (Rangsit Campus), Pathumthani, Thailand
| | - Mayuri Tarasuk
- Graduate Program in Bioclinical Sciences, Chulabhorn International College of Medicine, Thammasat University (Rangsit Campus), Pathumthani, Thailand
- Center of Excellence in Pharmacology and Molecular Biology of Malaria and Cholangiocarcinoma, Thammasat University (Rangsit Campus), Pathumthani, Thailand
| | - Tullayakorn Plengsuriyakarn
- Graduate Program in Bioclinical Sciences, Chulabhorn International College of Medicine, Thammasat University (Rangsit Campus), Pathumthani, Thailand
- Center of Excellence in Pharmacology and Molecular Biology of Malaria and Cholangiocarcinoma, Thammasat University (Rangsit Campus), Pathumthani, Thailand
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Vincent J, Lau KS, Evyan YCY, Chin SX, Sillanpää M, Chia CH. Biogenic Synthesis of Copper-Based Nanomaterials Using Plant Extracts and Their Applications: Current and Future Directions. NANOMATERIALS (BASEL, SWITZERLAND) 2022; 12:3312. [PMID: 36234439 PMCID: PMC9565561 DOI: 10.3390/nano12193312] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/06/2022] [Revised: 09/19/2022] [Accepted: 09/19/2022] [Indexed: 06/16/2023]
Abstract
Plants have been used for multiple purposes over thousands of years in various applications such as traditional Chinese medicine and Ayurveda. More recently, the special properties of phytochemicals within plant extracts have spurred researchers to pursue interdisciplinary studies uniting nanotechnology and biotechnology. Plant-mediated green synthesis of nanomaterials utilises the phytochemicals in plant extracts to produce nanomaterials. Previous publications have demonstrated that diverse types of nanomaterials can be produced from extracts of numerous plant components. This review aims to cover in detail the use of plant extracts to produce copper (Cu)-based nanomaterials, along with their robust applications. The working principles of plant-mediated Cu-based nanomaterials in biomedical and environmental applications are also addressed. In addition, it discusses potential biotechnological solutions and new applications and research directions concerning plant-mediated Cu-based nanomaterials that are yet to be discovered so as to realise the full potential of the plant-mediated green synthesis of nanomaterials in industrial-scale production and wider applications. This review provides readers with comprehensive information, guidance, and future research directions concerning: (1) plant extraction, (2) plant-mediated synthesis of Cu-based nanomaterials, (3) the applications of plant-mediated Cu-based nanomaterials in biomedical and environmental remediation, and (4) future research directions in this area.
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Affiliation(s)
- Jei Vincent
- Materials Science Program, Department of Applied Physics, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, Bangi 43600, Selangor, Malaysia
| | - Kam Sheng Lau
- Materials Science Program, Department of Applied Physics, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, Bangi 43600, Selangor, Malaysia
| | - Yang Chia-Yan Evyan
- Faculty of Engineering, Science and Technology, Nilai University, Nilai 71800, Negeri Sembilan, Malaysia
| | - Siew Xian Chin
- ASASIpintar Program, Pusat GENIUS@Pintar Negara, Universiti Kebangsaan Malaysia, Bangi 43600, Selangor, Malaysia
| | - Mika Sillanpää
- Materials Science Program, Department of Applied Physics, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, Bangi 43600, Selangor, Malaysia
- Department of Chemical Engineering, School of Mining, Metallurgy and Chemical Engineering, University of Johannesburg, P.O. Box 17011, Doornfontein 2028, South Africa
- Sustainable Membrane Technology Research Group (SMTRG), Chemical Engineering Department, Persian Gulf University, Bushehr P.O. Box 75169-13817, Iran
- Zhejiang Rongsheng Environmental Protection Paper Co. LTD, NO.588 East Zhennan Road, Pinghu Economic Development Zone, Zhejiang 314213, China
| | - Chin Hua Chia
- Materials Science Program, Department of Applied Physics, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, Bangi 43600, Selangor, Malaysia
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