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Farsang R, Kovács N, Szigeti M, Jankovics H, Vonderviszt F, Guttman A. Immobilized exoglycosidase matrix mediated solid phase glycan sequencing. Anal Chim Acta 2022; 1215:339906. [DOI: 10.1016/j.aca.2022.339906] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2022] [Revised: 04/27/2022] [Accepted: 05/01/2022] [Indexed: 11/29/2022]
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2
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Ismail AR, Baek KH. Lipase immobilization with support materials, preparation techniques, and applications: Present and future aspects. Int J Biol Macromol 2020; 163:1624-1639. [DOI: 10.1016/j.ijbiomac.2020.09.021] [Citation(s) in RCA: 60] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2020] [Revised: 08/19/2020] [Accepted: 09/03/2020] [Indexed: 12/11/2022]
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3
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Soares FQ, Alvarenga BF, Ruggiero MA, Casanova MC, Lima EM, Rabelo D, Chaves AR. Disposable pipette extraction phase based on styrene–divinylbenzene/pernigraniline composite, applied for dexamethasone determination in synovial fluid by HPLC with UV detector. ACTA CHROMATOGR 2019. [DOI: 10.1556/1326.2018.00460] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Affiliation(s)
| | - Bruna F. Alvarenga
- Instituto de Química, Universidade Federal de Goiás, Goiânia, Goiás, Brazil
| | | | - Monise C. Casanova
- Instituto de Química, Universidade Federal de Goiás, Goiânia, Goiás, Brazil
| | - Eliana M. Lima
- Faculdade de Farmácia, Universidade Federal de Goiás, Goiânia, Goiás, Brazil
| | - Denilson Rabelo
- Instituto de Química, Universidade Federal de Goiás, Goiânia, Goiás, Brazil
| | - Andréa R. Chaves
- Instituto de Química, Universidade Federal de Goiás, Goiânia, Goiás, Brazil
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4
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Bilal M, Asgher M, Cheng H, Yan Y, Iqbal HMN. Multi-point enzyme immobilization, surface chemistry, and novel platforms: a paradigm shift in biocatalyst design. Crit Rev Biotechnol 2019; 39:202-219. [PMID: 30394121 DOI: 10.1080/07388551.2018.1531822] [Citation(s) in RCA: 149] [Impact Index Per Article: 29.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Engineering enzymes with improved catalytic properties in non-natural environments have been concerned with their diverse industrial and biotechnological applications. Immobilization represents a promising but straightforward route, and immobilized biocatalysts often display higher activities and stabilities compared to free enzymes. Owing to their unique physicochemical characteristics, including the high-specific surface area, exceptional chemical, electrical, and mechanical properties, efficient enzyme loading, and multivalent functionalization, nano-based materials are postulated as suitable carriers for biomolecules or enzyme immobilization. Enzymes immobilized on nanomaterial-based supports are more robust, stable, and recoverable than their pristine counterparts, and are even used for continuous catalytic processes. Furthermore, the unique intrinsic properties of nanomaterials, particularly nanoparticles, also confer the immobilized enzymes to be used for their broader applications. Herein, an effort has been made to present novel potentialities of multi-point enzyme immobilization in the current biotechnological sector. Various nano-based platforms for enzyme/biomolecule immobilization are discussed in the second part of the review. In summary, recent developments in the use of nanomaterials as new carriers to construct robust nano-biocatalytic systems are reviewed, and future trends are pointed out in this article.
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Affiliation(s)
- Muhammad Bilal
- a School of Life Science and Food Engineering , Huaiyin Institute of Technology , Huaian , China
| | - Muhammad Asgher
- b Department of Biochemistry , University of Agriculture Faisalabad , Faisalabad , Pakistan
| | - Hairong Cheng
- c State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology , Shanghai Jiao Tong University , Shanghai , China
| | - Yunjun Yan
- d Key Lab of Molecular Biophysics of Ministry of Education , College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan , China
| | - Hafiz M N Iqbal
- e Tecnologico de Monterrey, School of Engineering and Sciences , Campus Monterrey , Monterrey , Mexico
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5
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Yang Y, Wang S, Zhou Z, Zhang R, Shen H, Song J, Su P, Yang Y. Enhanced reusability and activity: DNA directed immobilization of enzyme on polydopamine modified magnetic nanoparticles. Biochem Eng J 2018. [DOI: 10.1016/j.bej.2018.05.019] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
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6
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Kecskemeti A, Gaspar A. Particle-based immobilized enzymatic reactors in microfluidic chips. Talanta 2018; 180:211-228. [DOI: 10.1016/j.talanta.2017.12.043] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2017] [Accepted: 12/13/2017] [Indexed: 10/18/2022]
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7
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A General Overview of Support Materials for Enzyme Immobilization: Characteristics, Properties, Practical Utility. Catalysts 2018. [DOI: 10.3390/catal8020092] [Citation(s) in RCA: 459] [Impact Index Per Article: 76.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
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8
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Kecskemeti A, Gaspar A. Preparation and characterization of a packed bead immobilized trypsin reactor integrated into a PDMS microfluidic chip for rapid protein digestion. Talanta 2017; 166:275-283. [PMID: 28213235 DOI: 10.1016/j.talanta.2017.01.060] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2016] [Revised: 01/20/2017] [Accepted: 01/24/2017] [Indexed: 01/20/2023]
Abstract
This paper demonstrates the design, efficiency and applicability of a simple, inexpensive and high sample throughput microchip immobilized enzymatic reactor (IMER) for rapid protein digestion. The IMER contains conventional silica particles with covalently immobilized trypsin packed inside of a poly(dimethylsiloxane) (PDMS) microchip channel (10mm×1mm×35µm). The microchip consists of 9 different channels, enabling 9 simultaneous protein digestions. Trypsin was covalently immobilized using carbodiimide activation, the ideal trypsin/silica particle ratio (i.e. measured mass ratio before the immobilization reaction) was determined. The amount of immobilized trypsin was 10-15μg trypsin for 1mg silica particle. Migration times of CZE peptide maps showed good repeatability and reproducibility (RSD%=0.02-0.31%). The IMER maintained its activity for 2 months, in this period it was used effectively for rapid proteolysis. Four proteins (myoglobin, lysozyme, hemoglobin and albumin) in a wide size range (15-70kDa) were digested to demonstrate the applicability of the reactor. Their CZE peptide maps were compared to peptide maps obtained from standard in-solution digestion of the four proteins. The number of peptide peaks correlated well with the theoretically expected peptide number in both cases, the peak patterns of the electropherograms were similar, however, digestion with the microchip IMER requires only <10s, while in-solution digestion takes 16h. LC-MS/MS peptide mapping was also carried out, the four proteins were identified with satisfying sequence coverages (29-50%), trypsin autolysis peptides were not detected. The protein content of human serum was digested with the IMER and with in-solution digestion.
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Affiliation(s)
- Adam Kecskemeti
- Department of Inorganic and Analytical Chemistry, University of Debrecen, Egyetem ter 1, Debrecen 4032, Hungary
| | - Attila Gaspar
- Department of Inorganic and Analytical Chemistry, University of Debrecen, Egyetem ter 1, Debrecen 4032, Hungary.
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9
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Yan L, Qiao L, Ji J, Li Y, Yin X, Lin L, Liu X, Yao J, Wang Y, Liu B, Qian K, Liu B, Yang P. In-tip nanoreactors for cancer cells proteome profiling. Anal Chim Acta 2017; 949:43-52. [DOI: 10.1016/j.aca.2016.11.021] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2016] [Revised: 09/29/2016] [Accepted: 11/02/2016] [Indexed: 12/31/2022]
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10
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Yang XY, Chen LH, Li Y, Rooke JC, Sanchez C, Su BL. Hierarchically porous materials: synthesis strategies and structure design. Chem Soc Rev 2017; 46:481-558. [DOI: 10.1039/c6cs00829a] [Citation(s) in RCA: 839] [Impact Index Per Article: 119.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
This review addresses recent advances in synthesis strategies of hierarchically porous materials and their structural design from micro-, meso- to macro-length scale.
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Affiliation(s)
- Xiao-Yu Yang
- State Key Laboratory Advanced Technology for Materials Synthesis and Processing
- School of Materials Science and Engineering
- Wuhan University of Technology
- Wuhan
- China
| | - Li-Hua Chen
- State Key Laboratory Advanced Technology for Materials Synthesis and Processing
- School of Materials Science and Engineering
- Wuhan University of Technology
- Wuhan
- China
| | - Yu Li
- State Key Laboratory Advanced Technology for Materials Synthesis and Processing
- School of Materials Science and Engineering
- Wuhan University of Technology
- Wuhan
- China
| | - Joanna Claire Rooke
- Laboratory of Inorganic Materials Chemistry (CMI)
- University of Namur
- B-5000 Namur
- Belgium
| | - Clément Sanchez
- Chimie de la Matiere Condensee de Paris
- UniversitePierre et Marie Curie (Paris VI)
- Collège de France
- France
| | - Bao-Lian Su
- State Key Laboratory Advanced Technology for Materials Synthesis and Processing
- School of Materials Science and Engineering
- Wuhan University of Technology
- Wuhan
- China
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11
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Solid supports for extraction and preconcentration of proteins and peptides in microfluidic devices: A review. Anal Chim Acta 2016; 955:1-26. [PMID: 28088276 DOI: 10.1016/j.aca.2016.12.017] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2016] [Revised: 12/02/2016] [Accepted: 12/07/2016] [Indexed: 01/08/2023]
Abstract
Determination of proteins and peptides is among the main challenges of today's bioanalytical chemistry. The application of microchip technology in this field is an exhaustively developed concept that aims to create integrated and fully automated analytical devices able to quantify or detect one or several proteins from a complex matrix. Selective extraction and preconcentration of targeted proteins and peptides especially from biological fluids is of the highest importance for a successful realization of these microsystems. Incorporation of solid structures or supports is a convenient solution employed to face these demands. This review presents a critical view on the latest achievements in sample processing techniques for protein determination using solid supports in microfluidics. The study covers the period from 2006 to 2015 and focuses mainly on the strategies based on microbeads, monolithic materials and membranes. Less common approaches are also briefly discussed. The reviewed literature suggests future trends which are discussed in the concluding remarks.
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12
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Ning W, Bruening ML. Rapid Protein Digestion and Purification with Membranes Attached to Pipet Tips. Anal Chem 2015; 87:11984-9. [DOI: 10.1021/acs.analchem.5b03679] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Wenjing Ning
- Department of Chemistry, Michigan State University, East Lansing, Michigan 48824, United States
| | - Merlin L. Bruening
- Department of Chemistry, Michigan State University, East Lansing, Michigan 48824, United States
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13
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Chaves AR, Moura BH, Caris JA, Rabelo D, Queiroz MEC. The development of a new disposable pipette extraction phase based on polyaniline composites for the determination of levels of antidepressants in plasma samples. J Chromatogr A 2015; 1399:1-7. [DOI: 10.1016/j.chroma.2015.04.027] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2015] [Revised: 04/14/2015] [Accepted: 04/16/2015] [Indexed: 11/26/2022]
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14
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Foo HC, Smith NW, Stanley SM. Fabrication of an on-line enzyme micro-reactor coupled to liquid chromatography–tandem mass spectrometry for the digestion of recombinant human erythropoietin. Talanta 2015; 135:18-22. [DOI: 10.1016/j.talanta.2014.12.033] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2014] [Revised: 12/19/2014] [Accepted: 12/20/2014] [Indexed: 11/30/2022]
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15
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Dittrich J, Becker S, Hecht M, Ceglarek U. Sample preparation strategies for targeted proteomics via proteotypic peptides in human blood using liquid chromatography tandem mass spectrometry. Proteomics Clin Appl 2014; 9:5-16. [PMID: 25418444 DOI: 10.1002/prca.201400121] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2014] [Revised: 10/29/2014] [Accepted: 11/18/2014] [Indexed: 11/07/2022]
Abstract
The simultaneous quantification of protein concentrations via proteotypic peptides in human blood by liquid chromatography coupled to quadrupole MS/MS is an important field of bioanalytical research with a high potential for routine diagnostic applications. This review summarizes currently available sample preparation procedures and trends for absolute protein quantification in blood using LC-MS/MS. It discusses approaches of transferring established qualitative protocols to a quantitative analysis regarding their reliability and reproducibility. Techniques used to enhance method sensitivity such as the depletion of high-abundant proteins or the immunoaffinity enrichment of proteins and peptides are described. Furthermore, workflows for (i) protein denaturation, (ii) disulfide bridge reduction and (iii) thiol alkylation as well as (iv) enzymatic digestion for absolute protein quantification are presented. The main focus is on the tryptic digestion as a bottleneck of protein quantification via proteotypic peptides. Conclusively, requirements for a high-throughput application are discussed.
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Affiliation(s)
- Julia Dittrich
- Institute of Laboratory Medicine, Clinical Chemistry and Molecular Diagnostics, University Hospital Leipzig, Leipzig, Germany; LIFE - Leipzig Research Center for Civilization Diseases, University Leipzig, Leipzig, Germany
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16
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Alzahrani E, Welham K. Preconcentration of milk proteins using octadecylated monolithic silica microchip. Anal Chim Acta 2013; 798:40-7. [DOI: 10.1016/j.aca.2013.08.035] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2013] [Revised: 08/19/2013] [Accepted: 08/20/2013] [Indexed: 10/26/2022]
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17
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Homaei AA, Sariri R, Vianello F, Stevanato R. Enzyme immobilization: an update. J Chem Biol 2013; 6:185-205. [PMID: 24432134 DOI: 10.1007/s12154-013-0102-9] [Citation(s) in RCA: 479] [Impact Index Per Article: 43.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2013] [Accepted: 07/31/2013] [Indexed: 11/25/2022] Open
Abstract
Compared to free enzymes in solution, immobilized enzymes are more robust and more resistant to environmental changes. More importantly, the heterogeneity of the immo-bilized enzyme systems allows an easy recovery of both enzymes and products, multiple re-use of enzymes, continuous operation of enzymatic processes, rapid termination of reactions, and greater variety of bioreactor designs. This paper is a review of the recent literatures on enzyme immobilization by various techniques, the need for immobilization and different applications in industry, covering the last two decades. The most recent papers, patents, and reviews on immobilization strategies and application are reviewed.
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Affiliation(s)
- Ahmad Abolpour Homaei
- Department of Biology, Faculty of Science, University of Hormozgan, Bandarabbas, Iran
| | - Reyhaneh Sariri
- Reyhaneh Sariri, Department of Microbiology, Lahijan Branch, Islamic Azad University, Lahijan, Iran
| | - Fabio Vianello
- Department of Comparative Biomedicine and Food Science, University of Padua, Padua, Italy
| | - Roberto Stevanato
- Department of Molecular Sciences and Nanosystems, University of Venice, Venice, Italy
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18
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Zhai L, Chang C, Li N, Duong DM, Chen H, Deng Z, Yang J, Hong X, Zhu Y, Xu P. Systematic research on the pretreatment of peptides for quantitative proteomics using a C18
microcolumn. Proteomics 2013; 13:2229-37. [DOI: 10.1002/pmic.201200591] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2012] [Revised: 04/16/2013] [Accepted: 04/29/2013] [Indexed: 11/08/2022]
Affiliation(s)
- Linhui Zhai
- State Key Laboratory of Proteomics, Beijing Proteome Research Center; National Engineering Research Center for Protein Drugs, National Center for Protein Sciences, Beijing Institute of Radiation Medicine; Beijing P. R. China
- Key Laboratory of Combinatorial Biosynthesis and Drug Discovery (Wuhan University); Ministry of Education, and Wuhan University School of Pharmaceutical Sciences; Wuhan P. R. China
| | - Cheng Chang
- State Key Laboratory of Proteomics, Beijing Proteome Research Center; National Engineering Research Center for Protein Drugs, National Center for Protein Sciences, Beijing Institute of Radiation Medicine; Beijing P. R. China
| | - Ning Li
- State Key Laboratory of Proteomics, Beijing Proteome Research Center; National Engineering Research Center for Protein Drugs, National Center for Protein Sciences, Beijing Institute of Radiation Medicine; Beijing P. R. China
| | - Duc M. Duong
- State Key Laboratory of Proteomics, Beijing Proteome Research Center; National Engineering Research Center for Protein Drugs, National Center for Protein Sciences, Beijing Institute of Radiation Medicine; Beijing P. R. China
| | - Hao Chen
- Key Laboratory of Combinatorial Biosynthesis and Drug Discovery (Wuhan University); Ministry of Education, and Wuhan University School of Pharmaceutical Sciences; Wuhan P. R. China
| | - Zixin Deng
- Key Laboratory of Combinatorial Biosynthesis and Drug Discovery (Wuhan University); Ministry of Education, and Wuhan University School of Pharmaceutical Sciences; Wuhan P. R. China
| | - Jian Yang
- Tianjin Institute of Medical Equipment; Tianjin P. R. China
| | - Xuechuan Hong
- Key Laboratory of Combinatorial Biosynthesis and Drug Discovery (Wuhan University); Ministry of Education, and Wuhan University School of Pharmaceutical Sciences; Wuhan P. R. China
| | - Yunping Zhu
- State Key Laboratory of Proteomics, Beijing Proteome Research Center; National Engineering Research Center for Protein Drugs, National Center for Protein Sciences, Beijing Institute of Radiation Medicine; Beijing P. R. China
| | - Ping Xu
- State Key Laboratory of Proteomics, Beijing Proteome Research Center; National Engineering Research Center for Protein Drugs, National Center for Protein Sciences, Beijing Institute of Radiation Medicine; Beijing P. R. China
- Key Laboratory of Combinatorial Biosynthesis and Drug Discovery (Wuhan University); Ministry of Education, and Wuhan University School of Pharmaceutical Sciences; Wuhan P. R. China
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Treccani L, Yvonne Klein T, Meder F, Pardun K, Rezwan K. Functionalized ceramics for biomedical, biotechnological and environmental applications. Acta Biomater 2013; 9:7115-50. [PMID: 23567940 DOI: 10.1016/j.actbio.2013.03.036] [Citation(s) in RCA: 108] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2012] [Revised: 03/21/2013] [Accepted: 03/23/2013] [Indexed: 12/12/2022]
Abstract
Surface functionalization has become of paramount importance and is considered a fundamental tool for the development and design of countless devices and engineered systems for key technological areas in biomedical, biotechnological and environmental applications. In this review, surface functionalization strategies for alumina, zirconia, titania, silica, iron oxide and calcium phosphate are presented and discussed. These materials have become particularly important concerning the aforementioned applications, being not only of great academic, but also of steadily increasing human and commercial, interest. In this review, special emphasis is given to their use as biomaterials, biosensors, biological targets, drug delivery systems, implants, chromatographic supports for biomolecule purification and analysis, and adsorbents for toxic substances and pollutants. The objective of this review is to provide a broad picture of the enormous possibilities offered by surface functionalization and to identify particular challenges regarding surface analysis and characterization.
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Affiliation(s)
- Laura Treccani
- University of Bremen, Advanced Ceramics, Am Biologischen Garten 2, 28359 Bremen, Germany.
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20
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Vlakh EG, Tennikova TB. Flow-through immobilized enzyme reactors based on monoliths: II. Kinetics study and application. J Sep Sci 2013; 36:1149-67. [DOI: 10.1002/jssc.201201090] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2012] [Revised: 12/17/2012] [Accepted: 12/17/2012] [Indexed: 11/10/2022]
Affiliation(s)
- Evgenia G. Vlakh
- Institute of Macromolecular Compounds; Russian Academy of Sciences; St. Petersburg Russia
- Faculty of Chemistry; Saint-Petersburg State University; St. Petersburg Russia
| | - Tatiana B. Tennikova
- Institute of Macromolecular Compounds; Russian Academy of Sciences; St. Petersburg Russia
- Faculty of Chemistry; Saint-Petersburg State University; St. Petersburg Russia
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21
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Kawashima Y, Takahashi N, Satoh M, Saito T, Kado S, Nomura F, Matsumoto H, Kodera Y. Enhanced recovery of lyophilized peptides in shotgun proteomics by using an LC-ESI-MS compatible surfactant. Proteomics 2013; 13:751-5. [PMID: 23300112 DOI: 10.1002/pmic.201200462] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2012] [Revised: 11/12/2012] [Accepted: 12/04/2012] [Indexed: 12/16/2022]
Abstract
LC-ESI/MS/MS-based shotgun proteomics is currently the most commonly used approach for the identification and quantification of proteins in large-scale studies of biomarker discovery. In the past several years, the shotgun proteomics technologies have been refined toward further enhancement of proteome coverage. In the complex series of protocols involved in shotgun proteomics, however, loss of proteolytic peptides during the lyophilization step prior to the LC/MS/MS injection has been relatively neglected despite the fact that the dissolution of the hydrophobic peptides in lyophilized samples is difficult in 0.05-0.1% TFA or formic acid, causing substantial loss of precious peptide samples. In order to prevent the loss of peptide samples during this step, we devised a new protocol using Invitrosol (IVS), a commercially available surfactant compatible with ESI-MS; by dissolving the lyophilized peptides in IVS, we show improved recovery of hydrophobic peptides, leading to enhanced coverage of proteome. Thus, the use of IVS in the recovery step of lyophilized peptides will help the shotgun proteomics analysis by expanding the proteome coverage, which would significantly promote the discovery and development of new diagnostic markers and therapeutic targets.
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Affiliation(s)
- Yusuke Kawashima
- Center for Disease Proteomics, School of Science, Kitasato University, Sagamihara-shi, Kanagawa, Japan
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22
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Vlakh EG, Tennikova TB. Flow-through immobilized enzyme reactors based on monoliths: I. Preparation of heterogeneous biocatalysts. J Sep Sci 2013; 36:110-27. [DOI: 10.1002/jssc.201200594] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2012] [Revised: 08/13/2012] [Accepted: 08/13/2012] [Indexed: 11/11/2022]
Affiliation(s)
- Evgenia G. Vlakh
- Institute of Macromolecular Compounds; Russian Academy of Sciences; St. Petersburg Russia
- Faculty of Chemistry; Saint-Petersburg State University; St. Petersburg Russia
| | - Tatiana B. Tennikova
- Institute of Macromolecular Compounds; Russian Academy of Sciences; St. Petersburg Russia
- Faculty of Chemistry; Saint-Petersburg State University; St. Petersburg Russia
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23
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Hydrophilic immobilized trypsin reactor with magnetic graphene oxide as support for high efficient proteome digestion. J Chromatogr A 2012; 1254:8-13. [DOI: 10.1016/j.chroma.2012.07.030] [Citation(s) in RCA: 82] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2012] [Revised: 07/03/2012] [Accepted: 07/06/2012] [Indexed: 11/18/2022]
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24
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Rivera JG, Messersmith PB. Polydopamine-assisted immobilization of trypsin onto monolithic structures for protein digestion. J Sep Sci 2012; 35:1514-20. [DOI: 10.1002/jssc.201200073] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Affiliation(s)
- José G. Rivera
- Biomedical Engineering Department; Northwestern University; Evanston IL USA
- Chemistry of Life Processes Institute; Northwestern University; Evanston IL USA
| | - Phillip B. Messersmith
- Biomedical Engineering Department; Northwestern University; Evanston IL USA
- Materials Science and Engineering Department; Northwestern University; Evanston IL USA
- Chemical and Biological Engineering Department; Northwestern University; Evanston IL USA
- Chemistry of Life Processes Institute; Northwestern University; Evanston IL USA
- Institute for Bionanotechnology in Medicine; Northwestern University; Chicago IL USA. Robert H. Lurie Comprehensive Cancer Center; Northwestern University; Chicago IL USA
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25
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Daglioglu C, Zihnioglu F. Covalent immobilization of trypsin on glutaraldehyde-activated silica for protein fragmentation. ACTA ACUST UNITED AC 2012; 40:378-84. [DOI: 10.3109/10731199.2012.686917] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
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26
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Turiák L, Ozohanics O, Marino F, Drahos L, Vékey K. Digestion protocol for small protein amounts for nano-HPLC-MS(MS) analysis. J Proteomics 2011; 74:942-7. [DOI: 10.1016/j.jprot.2011.01.007] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2010] [Revised: 11/28/2010] [Accepted: 01/13/2011] [Indexed: 11/30/2022]
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27
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Abstract
Background: Automated methodologies using silica-based, monolithic, micropipette tip-based SPE have been developed for the analysis of small molecules in support of both preclinical and first-in-human development studies using LC–MS/MS. The use of micropipette tip-based SPE with the Tomtec Quadra 96® and the evaluation of prototype micropipette tips for use with the Hamilton Microlab® Star robot is outlined. Results: Mixed-mode cation exchange and C18 SPE methods have been developed using human and rat plasma for the extraction of lipophilic and polar analytes. These methods are advantageous as they use low plasma sample, washing and elution volumes and result in a method extraction cycle time of approximately 6.2 min for 96 samples. Conclusion: This significantly reduced extraction time, compared with 96-well plate format SPE, indicates that the sample preparation stage is no longer the rate-limiting stage in performing a selective extraction procedure. Robust and sensitive methods have been developed that have proven to be more cost effective than traditional 96-well plate format SPE methods.
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Namera A, Nakamoto A, Saito T, Miyazaki S. Monolith as a new sample preparation material: Recent devices and applications. J Sep Sci 2011; 34:901-24. [DOI: 10.1002/jssc.201000795] [Citation(s) in RCA: 90] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2010] [Revised: 01/12/2011] [Accepted: 01/15/2011] [Indexed: 11/07/2022]
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29
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Seto Y. Research and Development of On-site Decontamination System for Biological and Chemical Warfare Agents. ACTA ACUST UNITED AC 2011. [DOI: 10.1248/jhs.57.311] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Affiliation(s)
- Yasuo Seto
- Third Department of Forensic Science, National Research Institute of Police Science
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30
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Alzahrani E, Welham K. Design and evaluation of synthetic silica-based monolithic materials in shrinkable tube for efficient protein extraction. Analyst 2011; 136:4321-7. [DOI: 10.1039/c1an15447h] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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31
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Alwael H, Connolly D, Clarke P, Thompson R, Twamley B, O'Connor B, Paull B. Pipette-tip selective extraction of glycoproteins with lectin modified gold nano-particles on a polymer monolithic phase. Analyst 2011; 136:2619-28. [DOI: 10.1039/c1an15137a] [Citation(s) in RCA: 70] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Loftheim H, Asberg A, Reubsaet L. Accelerated 18O-labeling in urinary proteomics. J Chromatogr A 2010; 1217:8241-8. [PMID: 21094492 DOI: 10.1016/j.chroma.2010.10.119] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2010] [Revised: 10/18/2010] [Accepted: 10/27/2010] [Indexed: 02/03/2023]
Abstract
Proteolytic (18)O-labeling of peptides has been studied and optimized in order to improve the labeling efficiency and to accelerate the process without increasing the degree of incomplete labeling. Using peptides generated from tryptic digested bovine serum albumin (BSA) and cytochrome c as model proteins, it was shown that complete labeling was achieved after 2 h at pH 6. To increase the sample throughput in a bottom-up proteomic setup, tryptic digestion of proteins in-solution was replaced with tryptic digestion using immobilized trypsin. As a result, an integrated approach was made possible, where both digestion (pH 8) and (18)O/(16)O-labeling of the resulting peptides (pH 6) were done using immobilized trypsin beads. This simplified the sample handling and reduced the overall reaction time significantly: the setup enabled tryptic digestion and (18)O/(16)O-labeling without sample transfer steps within 3.5 h with average (18)O/(16)O-ratios of 0.96±0.13 in aqueous buffer. The initial results were confirmed with a more complex matrix, by spiking urine with the model proteins, yielding results comparable with the ratios obtained in buffer. Satisfying ratios were also achieved regarding urinary proteins identified in a full scale bottom-up experiment. Average (18)O/(16)O-peptide ratios of 0.83±0.13 and 0.91±0.27 indicated good performance in a highly relevant matrix for biomarker discovery.
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Affiliation(s)
- Håvard Loftheim
- Department of Pharmaceutical Chemistry, School of Pharmacy, University of Oslo, P.O. Box 1068 Blindern, NO-0316 Oslo, Norway
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Altun Z, Skoglund C, Abdel-Rehim M. Monolithic methacrylate packed 96-tips for high throughput bioanalysis. J Chromatogr A 2010; 1217:2581-8. [DOI: 10.1016/j.chroma.2009.10.072] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2009] [Revised: 10/22/2009] [Accepted: 10/23/2009] [Indexed: 11/16/2022]
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He P, Greenway G, Haswell SJ. Development of a monolith based immobilized lipase micro-reactor for biocatalytic reactions in a biphasic mobile system. Process Biochem 2010. [DOI: 10.1016/j.procbio.2009.12.008] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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35
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Measurement of acetylcholinesterase inhibition using bienzymes immobilized monolith micro-reactor with integrated electrochemical detection. Anal Chim Acta 2010; 659:9-14. [DOI: 10.1016/j.aca.2009.11.052] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2009] [Revised: 11/13/2009] [Accepted: 11/20/2009] [Indexed: 11/23/2022]
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36
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Ponomareva E, Kartuzova V, Vlakh E, Tennikova T. Monolithic bioreactors: Effect of chymotrypsin immobilization on its biocatalytic properties. J Chromatogr B Analyt Technol Biomed Life Sci 2010; 878:567-74. [DOI: 10.1016/j.jchromb.2010.01.001] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2009] [Revised: 12/23/2009] [Accepted: 01/07/2010] [Indexed: 10/19/2022]
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37
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Saunders KC, Ghanem A, Boon Hon W, Hilder EF, Haddad PR. Separation and sample pre-treatment in bioanalysis using monolithic phases: A review. Anal Chim Acta 2009; 652:22-31. [DOI: 10.1016/j.aca.2009.05.043] [Citation(s) in RCA: 73] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2009] [Revised: 05/29/2009] [Accepted: 05/30/2009] [Indexed: 10/20/2022]
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38
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Hahn HW, Rainer M, Ringer T, Huck CW, Bonn GK. Ultrafast Microwave-Assisted In-Tip Digestion of Proteins. J Proteome Res 2009; 8:4225-30. [DOI: 10.1021/pr900188x] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Hans W. Hahn
- Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens University, Innrain 52a, 6020 Innsbruck, Austria
| | - Matthias Rainer
- Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens University, Innrain 52a, 6020 Innsbruck, Austria
| | - Thomas Ringer
- Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens University, Innrain 52a, 6020 Innsbruck, Austria
| | - Christian W. Huck
- Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens University, Innrain 52a, 6020 Innsbruck, Austria
| | - Günther K. Bonn
- Institute of Analytical Chemistry and Radiochemistry, Leopold-Franzens University, Innrain 52a, 6020 Innsbruck, Austria
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Ma J, Zhang L, Liang Z, Zhang W, Zhang Y. Recent advances in immobilized enzymatic reactors and their applications in proteome analysis. Anal Chim Acta 2009; 632:1-8. [DOI: 10.1016/j.aca.2007.08.045] [Citation(s) in RCA: 100] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2007] [Revised: 08/26/2007] [Accepted: 08/28/2007] [Indexed: 11/26/2022]
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41
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Vukovic J, Loftheim H, Winther B, Reubsaet JLE. Improving off-line accelerated tryptic digestion. J Chromatogr A 2008; 1195:34-43. [DOI: 10.1016/j.chroma.2008.05.010] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2008] [Revised: 03/28/2008] [Accepted: 05/08/2008] [Indexed: 11/16/2022]
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42
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Ma J, Zhang L, Liang Z, Zhang W, Zhang Y. Monolith-based immobilized enzyme reactors: Recent developments and applications for proteome analysis. J Sep Sci 2007; 30:3050-9. [DOI: 10.1002/jssc.200700362] [Citation(s) in RCA: 79] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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