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Zheng HX, Liu WS, Sun D, Zhu SC, Li Y, Yang YL, Liu RR, Feng HY, Cai X, Cao Y, Xu GH, Morel JL, van der Ent A, Ma LQ, Liu YG, Rylott EL, Qiu RL, Tang YT. Plasma-Membrane-Localized Transporter NREET1 is Responsible for Rare Earth Element Uptake in Hyperaccumulator Dicranopteris linearis. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023; 57:6922-6933. [PMID: 37071813 DOI: 10.1021/acs.est.2c09320] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Rare earth elements (REEs) are critical for numerous modern technologies, and demand is increasing globally; however, production steps are resource-intensive and environmentally damaging. Some plant species are able to hyperaccumulate REEs, and understanding the biology behind this phenomenon could play a pivotal role in developing more environmentally friendly REE recovery technologies. Here, we identified a REE transporter NRAMP REE Transporter 1 (NREET1) from the REE hyperaccumulator fern Dicranopteris linearis. Although NREET1 belongs to the natural resistance-associated macrophage protein (NRAMP) family, it shares a low similarity with other NRAMP members. When expressed in yeast, NREET1 exhibited REE transport capacity, but it could not transport divalent metals, such as zinc, nickel, manganese, or iron. NREET1 is mainly expressed in D. linearis roots and predominantly localized in the plasma membrane. Expression studies in Arabidopsis thaliana revealed that NREET1 functions as a transporter mediating REE uptake and transfer from root cell walls into the cytoplasm. Moreover, NREET1 has a higher affinity for transporting light REEs compared to heavy REEs, which is consistent to the preferential enrichment of light REEs in field-grown D. linearis. We therefore conclude that NREET1 may play an important role in the uptake and consequently hyperaccumulation of REEs in D. linearis. These findings lay the foundation for the use of synthetic biology techniques to design and produce sustainable, plant-based REE recovery systems.
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Affiliation(s)
- Hong-Xiang Zheng
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510006, China
- Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Guangdong Provincial Engineering Research Center for Heavy Metal Contaminated Soil Remediation, Guangzhou 510006, China
| | - Wen-Shen Liu
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510006, China
- Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Guangdong Provincial Engineering Research Center for Heavy Metal Contaminated Soil Remediation, Guangzhou 510006, China
| | - Dan Sun
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510006, China
- Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Guangdong Provincial Engineering Research Center for Heavy Metal Contaminated Soil Remediation, Guangzhou 510006, China
| | - Shi-Chen Zhu
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510006, China
- Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Guangdong Provincial Engineering Research Center for Heavy Metal Contaminated Soil Remediation, Guangzhou 510006, China
| | - Yang Li
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510006, China
- Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Guangdong Provincial Engineering Research Center for Heavy Metal Contaminated Soil Remediation, Guangzhou 510006, China
| | - Yu-Lu Yang
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510006, China
- Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Guangdong Provincial Engineering Research Center for Heavy Metal Contaminated Soil Remediation, Guangzhou 510006, China
| | - Ruo-Rong Liu
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510006, China
- Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Guangdong Provincial Engineering Research Center for Heavy Metal Contaminated Soil Remediation, Guangzhou 510006, China
| | - Hua-Yuan Feng
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510006, China
- Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Guangdong Provincial Engineering Research Center for Heavy Metal Contaminated Soil Remediation, Guangzhou 510006, China
| | - Xuan Cai
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510006, China
- Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Guangdong Provincial Engineering Research Center for Heavy Metal Contaminated Soil Remediation, Guangzhou 510006, China
| | - Yue Cao
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510006, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou 510642, China
- Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Guangdong Provincial Engineering Research Center for Heavy Metal Contaminated Soil Remediation, Guangzhou 510006, China
| | - Guo-Hua Xu
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory of Plant Nutrition and Fertilization in Low-Middle Reaches of the Yangtze River, Nanjing Agricultural University, Nanjing 210095, China
| | - Jean Louis Morel
- Laboratoire Sols et Environnement, Universitéde Lorraine, INRA, Nancy 54000, France
| | - Antony van der Ent
- Centre for Mined Land Rehabilitation, Sustainable Minerals Institute, The University of Queensland, St Lucia, Queensland 4072, Australia
- Laboratory of Genetics, Wageningen University and Research, Wageningen 6708 WG, The Netherlands
| | - Lena Q Ma
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, Zhejiang 310058, China
| | - Yao-Guang Liu
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou 510642, China
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Life Sciences, South China Agricultural University, Guangzhou 510642, China
| | - Elizabeth L Rylott
- Centre for Novel Agricultural Products, Department of Biology, University of York, York YO10 5DD, U.K
| | - Rong-Liang Qiu
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510006, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou 510642, China
- Guangdong Provincial Key Laboratory of Agricultural & Rural Pollution Abatement and Environmental Safety, College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642, China
| | - Ye-Tao Tang
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510006, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou 510642, China
- Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Guangdong Provincial Engineering Research Center for Heavy Metal Contaminated Soil Remediation, Guangzhou 510006, China
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Orita I, Unno G, Kato R, Fukui T. Biosynthesis of Polyhydroxyalkanoate Terpolymer from Methanol via the Reverse β-Oxidation Pathway in the Presence of Lanthanide. Microorganisms 2022; 10:microorganisms10010184. [PMID: 35056633 PMCID: PMC8780949 DOI: 10.3390/microorganisms10010184] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2021] [Revised: 01/07/2022] [Accepted: 01/10/2022] [Indexed: 02/01/2023] Open
Abstract
Methylorubrum extorquens AM1 is the attractive platform for the production of value-added products from methanol. We previously demonstrated that M. extorquens equipped with PHA synthase with broad substrate specificity synthesized polyhydroxyalkanoates (PHAs) composed of (R)-3-hydroxybutyrate and small fraction of (R)-3-hydroxyvalerate (3HV) and (R)-3-hydroxyhexanoate (3HHx) units on methanol. This study further engineered M. extorquens for biosynthesis of PHAs with higher 3HV and 3HHx composition focusing on the EMC pathway involved in C1 assimilation. The introduction of ethylmalonyl-CoA decarboxylase, catalyzing a backward reaction in the EMC pathway, aiming to increase intracellular propionyl/butyryl-CoA precursors did not affect PHA composition. Reverse β-oxidation pathway and subsequent (R)-specific hydration of 2-enoyl-CoA were then enhanced by heterologous expression of four genes derived from Ralstonia eutropha for the conversion of propionyl/butyryl-CoAs to the corresponding (R)-3-hydroxyacyl-CoA monomers. The resulting strains produced PHAs with higher 3HV and 3HHx compositions, while the methylotrophic growth was severely impaired. This growth impairment was interestingly restored by the addition of La3+ without a negative impact on PHA biosynthesis, suggesting the activation of the EMC pathway by La3+. The engineered M. extorquens synthesized PHA terpolymer composed of 5.4 mol% 3HV and 0.9% of 3HHx with 41% content from methanol as a sole carbon source in the presence of La3+.
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Discovery of lanthanide-dependent methylotrophy and screening methods for lanthanide-dependent methylotrophs. Methods Enzymol 2021; 650:1-18. [PMID: 33867018 DOI: 10.1016/bs.mie.2021.01.031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
The lanthanide elements (Lns) affect the physiology and growth of certain microorganisms known as "Ln-responsive microorganisms." Among them, in 2011, it was first reported that strains of Methylobacterium exhibited high methanol dehydrogenase (MDH) activity when grown in the presence of Lns; the purified Ln-inducible MDH was identified as XoxF-type MDH, whose catalytic function had previously been unknown. XoxF was the first enzyme to be identified as Ln-dependent, and its function in methylotrophy is more fundamental and important than that of the corresponding Ca2+-dependent MDH MxaFI. XoxF is encoded in the genomes of methylotrophic as well as non-methylotrophic bacteria. Thus, Lns are among the most fascinating and important growth factors for bacteria that potentially utilize methanol. Bacteria that require Lns for methanol growth are called "Ln-dependent methylotrophs." Recent findings indicate that these microorganisms comprise an "Ln-dependent ecosystem" that we have not been able to reconstruct under laboratory conditions without Lns. In this chapter, we summarize methods for (1) screening of Ln-responsive microorganisms, (2) purification of native XoxFs from Ln-dependent methylotrophs, and (3) screening of Ln-dependent methylotrophs from natural environments, while providing a history of the discovery of the Ln-dependent methylotrophs.
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Pastawan V, Agus Fitriyanto N, Nakagawa T. Biological Function of Lanthanide in Plant-Symbiotic Bacteria: Lanthanide-Dependent Methanol Oxidation System. ACTA ACUST UNITED AC 2020. [DOI: 10.7831/ras.8.0_186] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Viagian Pastawan
- The United Graduate School of Agricultural Science, Gifu University, Tokai National Higher Education, Research System, 1-1 Yanagido, Gifu 501-1193, Japan
| | - Nanung Agus Fitriyanto
- Faculty of Animal Science, Universitas Gadjah Mada, Jl. Fauna No. 3 Bulaksumur, Yogyakarta 55281, Indonesia
| | - Tomoyuki Nakagawa
- The United Graduate School of Agricultural Science, Gifu University, Tokai National Higher Education, Research System, 1-1 Yanagido, Gifu 501-1193, Japan
- Faculty of Applied Biological Sciences, Gifu University, Tokai National Higher Education, Research System, 1-1 Yanagido, Gifu 501-1193, Japan
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