Genome sequence of Methanobacterium congolense strain Buetzberg, a hydrogenotrophic, methanogenic archaeon, isolated from a mesophilic industrial-scale biogas plant utilizing bio-waste

Improving anaerobic digestion performance after severe acidification: Unveiling the impacts of Fe3O4-bentonite composites in co-digestion of waste activated sludge and food waste

Acidification recovery in anaerobic digestion of food waste is challenging. This study explored its in-situ recovery using a co-substrate of food waste and waste activated sludge. Fe3O4 and bentonite were used as conductor and carrier, respectively, to enhance AD performance under severe acidification. The application of Fe3O4-bentonite resulted in a 152% increase in cumulative methane in the Fe3O4-bentonite 10 digester, demonstrating its effectiveness in restoring the acidified AD system. In acidified systems, bentonite enhanced the diversity and richness of microbial communities due to its buffering capacity. The excessive non-conductive polysaccharides excreted by bacteria in extracellular polymeric substances reduced the possibility of electron transfer by Fe3O4. However, in the synergistic application of Fe3O4 and bentonite, this resistance was alleviated, increasing the possibility of direct interspecies electron transfer, and accelerating the consumption of volatile fatty acids. This approach of integrating carrier and conductive materials is significant for in-situ restoration of acidified systems.

Interaction between phytoplankton and heterotrophic bacteria in Arctic fjords during the glacial melting season as revealed by eDNA metabarcoding

The hydrographic variability in the fjords of Svalbard significantly influences water mass properties, causing distinct patterns of microbial diversity and community composition between surface and subsurface layers. However, surveys on the phytoplankton-associated bacterial communities, pivotal to ecosystem functioning in Arctic fjords, are limited. This study investigated the interactions between phytoplankton and heterotrophic bacterial communities in Svalbard fjord waters through comprehensive eDNA metabarcoding with 16S and 18S rRNA genes. The 16S rRNA sequencing results revealed a homogenous community composition including a few dominant heterotrophic bacteria across fjord waters, whereas 18S rRNA results suggested a spatially diverse eukaryotic plankton distribution. The relative abundances of heterotrophic bacteria showed a depth-wise distribution. By contrast, the dominant phytoplankton populations exhibited variable distributions in surface waters. In the network model, the linkage of phytoplankton (Prasinophytae and Dinophyceae) to heterotrophic bacteria, particularly Actinobacteria, suggested the direct or indirect influence of bacterial contributions on the fate of phytoplankton-derived organic matter. Our prediction of the metabolic pathways for bacterial activity related to phytoplankton-derived organic matter suggested competitive advantages and symbiotic relationships between phytoplankton and heterotrophic bacteria. Our findings provide valuable insights into the response of phytoplankton-bacterial interactions to environmental changes in Arctic fjords.

Co-digestion of food waste and hydrothermal liquid digestate: Promotion effect of self-generated hydrochars

Hydrothermal treatment (HTT) can efficiently valorize the digestate after anaerobic digestion. However, the disposal of the HTT liquid is challenging. This paper proposes a method to recover energy through the anaerobic co-digestion of food waste and HTT liquid fraction. The effect of HTT liquid recirculation on anaerobic co-digestion performance was investigated. This study focused on the self-generated hydrochars that remained in the HTT supernatant after centrifugation. The effect of the self-generated hydrochars on the methane (CH₄) yield and microbial communities were discussed. After adding HTT liquids treated at 140 and 180 °C, the maximum CH₄ production increased to 309.36 and 331.61 mL per g COD, respectively. The HTT liquid exhibited a pH buffering effect and kept a favorable pH for the anaerobic co-digestion. In addition, the self-generated hydrochars with higher carbon content and large oxygen-containing functional groups remained in HTT liquid. They increased the electron transferring rate of the anaerobic co-digestion. The increased relative abundance of Methanosarcina, Syntrophomonadaceae, and Synergistota was observed with adding HTT liquid. The results of the principal component analysis indicate that the electron transferring rate constant had positive correlationships with the relative abundance of Methanosarcina, Syntrophomonadaceae, and Synergistota. This study can provide a good reference for the disposal of the HTT liquid and a novel insight regarding the mechanism for the anaerobic co-digestion.

Rapid Start-Up Characteristics of Anammox under Different Inoculation Conditions

The long multiplication time and extremely demanding enrichment environment requirements of Anammox bacteria (AAOB) have led to difficult reactor start-ups and hindered its practical dissemination. Few feasibility studies have been reported on the recovery of AAOB activity initiation after inlet substrate disconnection caused by an unfavorable condition, and few factors, such as indicators of the recovery process, have been explored. Therefore, in this experiment, two modified expanded granular sludge bed reactors (EGSB) were inoculated with 1.5 L anaerobic granular sludge (AGS) + 1 L Anammox sludge (AMS) (R1) and 2.5 L anaerobic granular sludge (AGS) (R2), respectively. After a long-term (140 days) starvation shock at a high temperature (38 °C), the bacteria population activity recovery experiments were conducted. After 160 days, both reactors were successfully started up, and the total nitrogen removal rates exceeded 87%. Due to the experimental period, the total nitrogen removal rate of R2 was slightly higher than that of R1 in the final stage. However, it is undeniable that R2 had a relatively long activity delay during startup, while R1 had no significant activity delay during startup. The sludge obtained from R1 had a higher specific anammox activity (SAA). Analysis of the extracellular polymer substances (EPS) results showed that the extracellular polymer content in R1 was higher than that in R2 throughout the recovery process, indicating that R1 had higher sludge stability and denitrification performance. Scanning electron microscopy (SEM) analysis showed that more extracellular filamentous bacteria could be seen in the R1 reactor with better morphology of Anammox bacteria. In contrast, the R2 reactor had fewer extracellular hyphae and micropores as a percentage and higher filamentous bacteria content. The results of microbial 16SrDNA analysis showed that R1 used AAOB as inoculum to initiate Anammox, and the reactor was enriched with Anammox bacteria earlier and in much greater abundance than R2. The experimental results indicated that inoculating mixed anaerobic granular sludge and Anammox sludge to initiate an anammox reactor was more effective.

The novel oligopeptide utilizing species Anaeropeptidivorans aminofermentans M3/9T, its role in anaerobic digestion and occurrence as deduced from large-scale fragment recruitment analyses

Research on biogas-producing microbial communities aims at elucidation of correlations and dependencies between the anaerobic digestion (AD) process and the corresponding microbiome composition in order to optimize the performance of the process and the biogas output. Previously, Lachnospiraceae species were frequently detected in mesophilic to moderately thermophilic biogas reactors. To analyze adaptive genome features of a representative Lachnospiraceae strain, Anaeropeptidivorans aminofermentans M3/9T was isolated from a mesophilic laboratory-scale biogas plant and its genome was sequenced and analyzed in detail. Strain M3/9T possesses a number of genes encoding enzymes for degradation of proteins, oligo- and dipeptides. Moreover, genes encoding enzymes participating in fermentation of amino acids released from peptide hydrolysis were also identified. Based on further findings obtained from metabolic pathway reconstruction, M3/9T was predicted to participate in acidogenesis within the AD process. To understand the genomic diversity between the biogas isolate M3/9T and closely related Anaerotignum type strains, genome sequence comparisons were performed. M3/9T harbors 1,693 strain-specific genes among others encoding different peptidases, a phosphotransferase system (PTS) for sugar uptake, but also proteins involved in extracellular solute binding and import, sporulation and flagellar biosynthesis. In order to determine the occurrence of M3/9T in other environments, large-scale fragment recruitments with the M3/9T genome as a template and publicly available metagenomes representing different environments was performed. The strain was detected in the intestine of mammals, being most abundant in goat feces, occasionally used as a substrate for biogas production.

Effect of asparagine, corncob biochar and Fe(II) on anaerobic biological treatment under low temperature: Enhanced performance and microbial community dynamic

To ensure the efficiency of anaerobic biological treatment technology at lower temperature will expand the application of anaerobic reactor in practical industrial wastewater treatment. Through a batch experiment, asparagine, corncob biochar and Fe²⁺ were selected as strengthening measures to analyze the effects on the anaerobic sludge characteristics, microbial community and functional genes in the low temperature (15 °C). Results showed that after 21 days, asparagine began to promote chemical oxygen demand (COD) removal by the anaerobic treatment, with highest COD removal rate (81.65%) observed when the asparagine concentration was 1 mmol/L. When adding 3 g biochar, 25 mg/L Fe²⁺, and the combination of biochar and Fe²⁺, the COD removal rates reached to 82%, 92% and 97%, respectively. In the presence of asparagine, both biochar and Fe²⁺ alone or in combination increased the activity of protease (16.35%-120.71%) and coenzyme F₄₂₀ (5.63%-130.2%). The relative abundance of Proteobacteria and Methanobacterium increased in the presence of biochar and Fe²⁺. In addition, the KEGG results showed that the combined addition of biochar and Fe²⁺ enhanced bacterial replication and repair and promoted amino acid metabolism of archaea.

Influence of organic loading rate and temperature fluctuation caused by solar energy heating on food waste anaerobic digestion

Anaerobic digestion, one of the most currently remarkable techniques for biogas production, has provided a method of high organic solid waste disposal. Operating temperature, especially in the winter of northern city, makes biomass degradation less efficient. The microorganisms that take on the role of gas production are greatly affected by temperature. In our study, solar energy was selected for anaerobic digestion and winter was selected as the experimental environment. Anaerobic digestion was performed with solar heating and electric heating separately. Parameters were tested (pH, soluble chemical oxygen demand, total ammonia nitrogen, total volatile fatty acids), and microbial structure was monitored. The volume of methane produced was measured over 60 days. The methane yield differed by 15.92% under different conditions. It is clearly shown that methane yield can be improved by a steady temperature environment. Nevertheless, dominant bacteria and microbial structure did not seem to be much different. This study may provide more energy-saving ideas for winter anaerobic digestion projects in northern regions.

Effects of PFOA on the physicochemical properties of anaerobic granular sludge: Performance evaluation, microbial community and metagenomic analysis

The impact of perfluorooctanoic acid (PFOA) on the anaerobic granular sludge was evaluated through a sequential batch experiment. Results showed that PFOA inhibited the chemical oxygen demand (COD) removal rate of the sludge and the dosage of 100 mg/L PFOA was more obvious. However, this negative effect would gradually weaken with the adaptation of microorganisms. For the 50 mg/L PFOA experimental group, the proteins content in the extracellular polymeric substances (EPS) of the anaerobic granular sludge increased from 1.53 mg/g to 3.65 mg/g. Meanwhile, PFOA inhibited the 2-(p-iodophenyl)-3-(p-nitrophenyl)-5-phenyltetrazolium chloride (INT) activity of the anaerobic granular sludge. Furthermore, 100 mg/L PFOA reduced the relative abundance of Proteobacteria by 5.99% and Longilinea by 1.11%. 100 mg/L PFOA mainly restricted COD removal by affecting the glycolysis process, with the abundances of glucokinase and pyruvate kinase reduced by 8% and 28.1%, respectively. Compared with the control group, the relative abundance of the methyl-coenzyme M reductase alpha subunit increased by 84%, respectively, under 100 mg/L PFOA.

Effects of organic loading rates on high-solids anaerobic digestion of food waste in horizontal flow reactor: Methane production, stability and mechanism

To maximize the methane production efficiency of high-solids anaerobic digestion (HSAD) of food waste (FW), a horizontal flow reactor was operated under mesophilic, semi-continuous condition at organic loading rates (OLRs) ranging from 1.00 to 13.80 kg-VS/(m³ d). The gas production, substrate transformation, and microbial community characteristics of the horizontal flow HSAD reactor were evaluated. The results indicated that the methane yield (0.173-0.516 L/(g d)) fluctuated with the increasing OLR, volumetric methane production rate (0.25-5.69 L/(L d)) increased with increasing OLR, and the volatile solids (VS) reduction rate ranged between 83.30% and 93.05%. The relationship of biogas or methane production with OLR and HRT in the horizontal flow HSAD reactor were characterized with an empirical equation. The concentrations of soluble COD and volatile fatty acid exhibited significant fluctuations, and free ammonia-nitrogen peaked at the OLR of 13.80 kg-VS/(m³ d). Microbial community analysis revealed that the methanogenic metabolic pathway changes along the propelling direction of the horizontal flow HSAD reactor from CH₃COOH and H₂/CO₂ pathways to CH₃COOH, H₂/CO₂, and H₂/methyl co-dominant pathways. These results provide theoretical support for stable methane production from FW and deeper insight into horizontal flow HSAD for FW treatment.

Hydrogenotrophic methanogenic granular sludge formation for highly efficient transforming hydrogen to CH4

This paper presents a potential process that can enhance H₂ transformation to CH₄ and simultaneously upgrading biogas by using hydrogenotrophic methanogens. For the first time, anaerobic granules were developed in upflow anaerobic sludge blanket (UASB) reactor feeding H₂/CO₂ syngas as the sole substrate and the granule characterization was thoroughly investigated. The results from experiment revealed that the H₂ consumption rates of UASB reactor increased from 32.2 mmol L^-1·d^-1 at H₂ feeding rate 0.08 g L^-1·d^-1 to 132.0 mmol L^-1·d^-1 at 0.37 g L^-1·d^-1, indicating that the hydrogenotrophic methanogenesis pathway was stimulated by injection of H₂. Abundant cavities and cracks were observed on the surface and cross-section of granules, which greatly facilitated internally transferring H₂/CO₂ synthesis gas and biogas escape. The abundance of hydrogenotrophic Methanobacterium increased, while Methanosaeta, Methanosarcina, and Methanomassiliicoccus decreased with increasing H₂ feeding rate. In general, this paper offers a feasible solution in terms of energy transformation and connecting power to fuel.

Biomethane enhancement from corn straw using anaerobic digestion by-products as pretreatment agents: A highly effective and green strategy

The development of biogas projects feed by lignocellulosic biomass has been constrained by the high cost of pre- and post-treatment. In this study, a novel strategy for pretreatment by using two by-products, i.e., CO₂ and liquid digestate (LD), generated from anaerobic digestion (AD) was developed to overcome these shortcomings. Results showed that corn straw pretreated in LD pressurized under 1 Mpa CO₂ at 55 ℃ resulted in increased glucose and xylose contents and a 9.80% decrease in cellulose crystallinity. After 45 days of AD conversion, the methane yield increased by 50.97% compared with untreated straw. However, pretreatment in LD pressurized under 1 Mpa CO₂ at 170 ℃ produced 5-hydroxymethylfurfural and furfural, which led to a decrease in methane production from the straw in the subsequent AD conversion. The alteration of the microbial community in the pretreated slurry at 55 °C was another potential contributor to the enhanced performance of AD.

Study on the mechanism of inhibiting the calcification of anaerobic granular sludge induced by the addition of trace signal molecule (3O-C6-HSL)

Microbiota quorum sensing (QS) induced by 3O-C6-HSL (N-(β-ketocaproyl)-DL-homoserine lactone) inhibited the calcification of anaerobic granular sludge (AnGS), and the mechanism of promoting the activity recovery of calcified AnGS was studied in this paper. Through research, it was speculated that 3O-C6-HSL acted on calcified AnGS residual microorganisms to trigger QS. It enriched many functional microorganisms. For example, it promoted the growth of Methanospirillum. The CO₂ could be consumed quickly by Methanospirillum and reduced the calcium carbonate formation. The increase of microbial biomass would promote the activity of sludge. What's more, the pore size and porosity of sludge would increase, so the mass transfer channel will be broadened at same time. All those, could help the calcified AnGS quickly restore the activity and anaerobic system recover normal, which provided a new idea for the emergency rescue of anaerobic system in the future.

Evaluation of biochar addition and circulation control strengthening measures on efficiency and microecology of food waste treatment in anaerobic reactor

The process of strengthening an expanded granular sludge blanket (EGSB) reactor under ammonia nitrogen stress conditions and by adopting three strengthening measures, namely, opening the circulation (OC), adding modified biochar (MB), adding modified biochar along with opening the circulation (MBOC), to treat food waste was studied. When the ammonia nitrogen concentration of influent increased to 1200 mg/L, the removal rate of COD reduced to about 75%, while the removal rate of ammonia nitrogen was about 6%. The average COD removal rate of the anaerobic reactor in the last 5 days of each operating cycle i.e. OC, MB and MBOC, was 85.51%, 84.11% and 90.03%, respectively. At the 30th day of each treatment-OC, MB and MBOC, the protease content in the sludge was 44.61, 42.47, 46.24 NH₂-N (mg)/mg, respectively. and the content of coenzyme F₄₂₀ was 0.244, 0.217 and 0.267 mmol/g, respectively. Proteobacteria was the most abundant phylum in the stage I (OC), reaching 34.36%. It was accounted for 16.68% and 21.38%, respectively, in the stage II (MB) and stage III (MBOC). The dominant archaea in the three stages were Methanosaeta, whose abundance was 38.98% in stage I, which increased to 64.94% and 64.01% in stage II and III, respectively. Among the active carbohydrate enzymes, the gene abundance of Glycoside transferases in the MBOC stage was the largest among the three stages.

Biomethane Yield, Physicochemical Structures, and Microbial Community Characteristics of Corn Stover Pretreated by Urea Combined with Mild Temperature Hydrotherm

The corn stover (CS)’s compact structure makes it challenging for microorganisms to use in anaerobic digestion (AD). Therefore, improving CS biodegradability has become a key focus in AD studies. Methods are being targeted at the pretreatment of CS, combining advanced urea with mild temperature hydrotherm pretreatment to study its effect on promoting the AD process of CS. The biomethane yield, physicochemical structure, and microbial community characteristics were investigated. CS samples were assigned into groups differed by a range of pretreatment times (from 24 to 96 h) and set at a temperature of 50 °C with a 2% urea addition. Results revealed that the 72-h group obtained the highest biomethane yield of 205 mL/g VS⁻¹, volatile solid (VS) and total solid (TS) removal rates of 69.3% and 47.7%, which were 36.7%, 25.3% and 27.5% higher than those of untreated one, respectively. After conducting several analyses, results confirmed the pretreatment as a method for altering CS microstructures benefits biomethane production. The most resounding differences between pretreated and untreated groups were observed within a microbial community, an integral factor for improved AD performance. This study serves to confirm that this specific pretreatment is an effective method for enhancing biomethane production in CS.

Roles of modified biochar in the performance, sludge characteristics, and microbial community features of anaerobic reactor for treatment food waste

Anaerobic digestion (AD) is a green technology widely applied to food waste treatment. Although the AD has high efficiency, instability often occurs. The main purpose of the study is to understand the mechanism of modified biochar improving AD performance. The effects of different modified biochar on the efficiency and microecology of an anaerobic reactor treating food waste were investigated. Bagasse biochar was used as the substrate to explore the effects of iron-modified (A), chitosan-modified (B), iron-chitosan-modified (C) and iron‑magnesium-chitosan-modified (D) biochar on the anaerobic digestion process, sludge characteristics and microbial community. The results show that the average COD removal efficiency of the four reactors during the last five days of the experimentation period was 86.95%, 85.90%, 92.22% and 93.29%, respectively. Adding iron‑magnesium-chitosan-modified biochar could improve the efficiency of COD removal in the anaerobic reactor under ammonia nitrogen stress. On day 10 of operation, the content of coenzyme F₄₂₀ in the sludge of anaerobic reactors C and D reached to 0.44 and 0.57 mmol/g, respectively, indicating that the metal-chitosan complex biochar could promote the production of coenzyme F₄₂₀ in the early stage of the experiment. Within the four anaerobic reactors, Firmicutes, Bacteroidetes, Proteobacteria and Chloroflexi were the dominant bacteria, and the abundance of Chloroflexi reached a maximum of 26.24% in the reactor C. As for archaea, Methanobacterium and Methanothrix were the most dominant accounting for 44.03%, 49.88%, 31.29%, 52.01% and 38.34%, 34.52%, 50.9%, 35.72% respectively in the four reactors. KEGG functional analysis showed that the energy metabolism of bacteria and archaea in the reactor D was the largest among the four reactors. Meanwhile, the gene abundance associated with carbohydrate metabolism and membrane transport of microorganisms in the reactor D was greater than that of other groups.

Methane-fueled microbial fuel cells with the formate-acclimating electroactive culture

Methane gas is widespread in natural environments and anaerobic wastewater treatment sites, bringing the risk of the greenhouse effect and energy loss if left unmanaged. A methane-fueled microbial fuel cell (MFC) can convert methane to electricity under mild condition, but faced difficulties in startup. In this study, the new startup strategy and operation performance for methane-fueled MFCs were investigated. After the pre-cultivation of formate-acclimating electroactive culture, the methane-fueled MFC was successfully started up in a short time of 53 d. Increasing concentrations of molybdenum and tungsten in medium facilitated both methane consumption and electricity generation. Under the optimal condition (batch duration of 11 h, 30 °C, pH 7 buffered by phosphate buffer solution), the methane-fueled MFC achieved the maximum power density of 166 mW/m³, a coulomb production of 6.58 ± 0.07C/batch, a CE of 27.4 ± 0.4% and a methane consumption of 31.2 ± 0.3 μmol/batch. This work explored a suitable inoculum (formate-acclimating electroactive culture) for methane-fueled MFCs.

Severe Corrosion of Carbon Steel in Oil Field Produced Water Can Be Linked to Methanogenic Archaea Containing a Special Type of [NiFe] Hydrogenase

Methanogenic archaea have long been implicated in microbially influenced corrosion (MIC) of oil and gas infrastructure, yet a first understanding of the underlying molecular mechanisms has only recently emerged. We surveyed pipeline-associated microbiomes from geographically distinct oil field facilities and found methanogens to account for 0.2 to 9.3% of the 16S rRNA gene sequencing reads. Neither the type nor the abundance of the detected methanogens was correlated with the perceived severity of MIC in these pipelines. Using fluids from one pipeline, MIC was reproduced in the laboratory, both under stagnant conditions and in customized corrosion reactors simulating pipeline flow. High corrosion rates (up to 2.43 mm Fe⁰ · yr^-1) with macroscopic, localized corrosion features were attributed to lithotrophic, mesophilic microbial activity. Other laboratory tests with the same waters yielded negligible corrosion rates (<0.08 mm Fe⁰ · yr^-1). Recently, a novel [NiFe] hydrogenase from Methanococcus maripaludis strain OS7 was demonstrated to accelerate corrosion. We developed a specific quantitative PCR (qPCR) assay and detected the gene encoding the large subunit of this hydrogenase (labeled micH) in corrosive (>0.15 mm Fe⁰ · yr^-1) biofilms. The micH gene, on the other hand, was absent in noncorrosive biofilms, despite an abundance of methanogens. Reconstruction of a nearly complete Methanococcus maripaludis genome from a highly corrosive mixed biofilm revealed micH and associated genes in nearly identical genetic configuration to that in strain OS7, thereby supporting our hypothesis that the encoded molecular mechanism contributed to corrosion. Lastly, the proposed MIC biomarker was detected in multiple oil fields, indicating a geographically widespread involvement of this [NiFe] hydrogenase in MIC.IMPORTANCE Microorganisms can deteriorate built environments, which is particularly problematic in the case of pipelines transporting hydrocarbons to industrial end users. MIC is notoriously difficult to detect and monitor and, as a consequence, is a particularly difficult corrosion mechanism to manage. Despite the advent of molecular tools and improved microbial monitoring strategies for oil and gas operations, specific underlying MIC mechanisms in pipelines remain largely enigmatic. Emerging mechanistic understanding of methanogenic MIC derived from pure culture work allowed us to develop a qPCR assay that distinguishes technically problematic from benign methanogens in a West African oil field. Detection of the same gene in geographically diverse samples from North America hints at the widespread applicability of this assay. The research presented here offers a step toward a mechanistic understanding of biocorrosion in oil fields and introduces a binary marker for (methanogenic) MIC that can find application in corrosion management programs in industrial settings.

Influence of biodegradable polybutylene succinate and non-biodegradable polyvinyl chloride microplastics on anammox sludge: Performance evaluation, suppression effect and metagenomic analysis

Microplastics (MPs) has been widely detected in wastewater treatment plants. However, there is a lack of research on its influence on anaerobic ammonia oxidation (anammox) process. Therefore, the effects of polybutylene succinate (PBS) and polyvinyl chloride (PVC) MPs on the nitrogen removal performance, microbial community and metabolites of anammox sludge were investigated. Results showed that PBS and PVC MPs reduced the nitrite removal efficiency of the anammox sludge, and PVC1 (0.1 g/L PVC) group was the most significant at 19.2 %. Fourier transform infrared (FTIR) and X-ray photoelectron spectroscopy (XPS) spectra showed that PBS2 (0.5 g/L PBS) group increased the polysaccharide content in the anammox sludge. This may be because of the byproduct, which was produce during the biodegradation of PBS MPs, and decrease the agglomeration capacity of sludge, so as to increase the mass transfer. PBS2 group reduced the relative abundance of Methanosaeta (10.18 %) and the methane modules, and stimulated the anammox bacteria Ca. Brocadia (1.17 %) and the relative nitrogen metabolism modules. PVC2 group reduced the relative abundance of Ca. Brocadia (3.02 %), while was enriched Methanosaeta (2.1 %). Non-biodegradable PVC MPs was more harmful to anammox sludge, which would draw attention to the entry of PVC MPs into the anammox system.

The Role of Petrimonas mucosa ING2-E5AT in Mesophilic Biogas Reactor Systems as Deduced from Multiomics Analyses

Members of the genera Proteiniphilum and Petrimonas were speculated to represent indicators reflecting process instability within anaerobic digestion (AD) microbiomes. Therefore, Petrimonas mucosa ING2-E5AT was isolated from a biogas reactor sample and sequenced on the PacBio RSII and Illumina MiSeq sequencers. Phylogenetic classification positioned the strain ING2-E5AT in close proximity to Fermentimonas and Proteiniphilum species (family Dysgonomonadaceae). ING2-E5AT encodes a number of genes for glycosyl-hydrolyses (GH) which are organized in Polysaccharide Utilization Loci (PUL) comprising tandem susCD-like genes for a TonB-dependent outer-membrane transporter and a cell surface glycan-binding protein. Different GHs encoded in PUL are involved in pectin degradation, reflecting a pronounced specialization of the ING2-E5AT PUL systems regarding the decomposition of this polysaccharide. Genes encoding enzymes participating in amino acids fermentation were also identified. Fragment recruitments with the ING2-E5AT genome as a template and publicly available metagenomes of AD microbiomes revealed that Petrimonas species are present in 146 out of 257 datasets supporting their importance in AD microbiomes. Metatranscriptome analyses of AD microbiomes uncovered active sugar and amino acid fermentation pathways for Petrimonas species. Likewise, screening of metaproteome datasets demonstrated expression of the Petrimonas PUL-specific component SusC providing further evidence that PUL play a central role for the lifestyle of Petrimonas species.

Biohythane production via single-stage fermentation using gel-entrapped anaerobic microorganisms: Effect of hydraulic retention time

Research of single-stage anaerobic biohythane production is still in an infant stage. A single-stage dark fermentation system using separately-entrapped H₂- and CH₄-producing microbes was operated to produce biohythane at hydraulic retention times (HRTs) of 48, 36, 24, 12 and 6 h. Peak biohythane production was obtained at HRT 12 h with H₂ and CH₄ production rates of 3.16 and 4.25 L/L-d, respectively. At steady-state conditions, H₂ content in biohythane and COD removal efficiency were in ranges of 7.3-84.6 % and 70.4-77.9%, respectively. During the fermentation, the microbial community structure of the entrapped H₂-producing microbes was HRT-independent whereas entrapped CH₄-producing microbes changed at HRTs 12 and 6 h. Caproiciproducens and Methanobacterium were the dominant genera for producing H₂ and CH₄, respectively. The novelty of this work is to develop a single-stage biohythane production system using entrapped anaerobic microbes which requires fewer controls than two-stage systems.

A Membership-Fusing Model for Characterizing the Shift of Methanogen Community in a Three-Stage Sludge-Treatment Process

Anaerobic digestion (AD) is an economical and effective method to treat sludge. AD with several pretreatments is the prior process to treat surplus sludge for a wastewater treatment plant. During a sludge-treatment process, various methanogens play their specific role in each sludge-processing stage where different methanogens predominate. Therefore, an expert in the shift of methanogen community could facilitate the workers in a plant to understand the efficiency of the sludge-treatment process. In this paper, a membership-fusing model is established to characterize the shift of methanogen community in a three-stage sludge-treatment process. The introduction of fuzzy sets clarifies the vagueness of the methanogen community structure between two processing stages. Dempster–Shafer (DS) evidence theory effectively alleviates the data error generated among paralleling samples. The accuracy of the model was verified, and the result shows the model could clearly distinguish the methanogen community structure of the three stages and make accurate judgment on the processing stage affiliation. The reliability of the model in dealing with different numbers of conflict data was proved and the experiment indicates the model could make a reliable judgment on the processing stage affiliation by reasonably fusing the interference data.

Enhanced hydrolysis and acidification strategy for efficient co-digestion of pretreated corn stover with chicken manure: Digestion performance and microbial community structure

The effect of enhanced hydrolysis and acidification (EHA) strategy on co-digestion performance of pretreated corn stover (CS) with chicken manure (CM) was investigated. The EHA process was applied to the CS pretreated with KOH and liquid fraction of digestate (LFD), prior to anaerobic digestion. The results showed that the efficiencies of hydrolysis and acidification for the pretreated CS group were significantly higher than the CS group. The maximum cumulative biomethane yield of 240.5 mL·gVS^-1 and 242.0 mL·gVS^-1 were obtained for the KOH CS group and LFD CS group during the EHA process at 1 day, showing 26.6% and 27.4% improvement over that of the control, respectively. T₉₀ was shortened by 38.2%-44.1% and 17.7%-38.2%, correspondingly. The synergistic effects and hydrolysis kinetics were also enhanced by the EHA process. The communities of bacteria (Firmicutes, Proteobacteria, and Bacteroidetes) and archaea (Methanosaeta, Methanobacterium, and Methanosarcina) were enriched by the EHA process, and their interactions contributed to the improved digestion performance. Therefore, the EHA process was recommended for efficient biomethane conversion in co-digestion of CS and CM.

Volatile Fatty Acids Production from Microalgae Biomass: Anaerobic Digester Performance and Population Dynamics during Stable Conditions, Starvation, and Process Recovery

Disturbances in anaerobic digestion (AD) negatively impact the overall reactor performance. These adverse effects have been widely investigated for methane generation. However, AD recently appeared as a potential technology to obtain volatile fatty acids (VFAs) and thus, the impact of process disturbances must be evaluated. In this sense, microbial response towards a starvation period of two weeks was investigated resulting in a conversion of organic matter into VFAs of 0.39 ± 0.03 COD-VFAs/CODin. However, the lack of feeding reduced the yield to 0.30 ± 0.02 COD-VFAs/CODin. Microbial analysis revealed that the starvation period favored the syntrophic acetate-oxidizing bacteria coupled with hydrogenotrophic methanogens. Finally, the system was fed at 9 g COD/Ld resulting in process recovery (0.39 ± 0.04 COD-VFAs/CODin). The different microbiome obtained at the end of the process was proved to be functionally redundant, highlighting the AD robustness for VFAs production.

Performance of different methanogenic species for the microbial electrosynthesis of methane from carbon dioxide

Microbial electrosynthesis (MES) is a promising technology to convert CO₂ and electricity into the biofuel methane using methanogens. Until now, most investigations on electro-methanogenesis are "proof-of-principle" studies. In this paper, different strains were quantitatively compared in regard to final methane concentration, yields based on CO₂-conversion, productivities as well as Coulombic efficiencies in order to identify suitable organisms for MES. Methanococcus vannielii, Methanococcus maripaludis, Methanolacinia petrolearia, Methanobacterium congolense, and Methanoculleus submarinus were able to produce methane via MES at -700 mV vs. standard hydrogen electrode (SHE). Beside methane also biological H₂ production was detected during MES, which might be due to the involvement of hydrogenases. A direct electron transfer pathway is most likely. Obviously, M. maripaludis is the most resource efficient methane producer in microbial electrosynthesis regarding the methane productivity (8.81 ± 0.51 mmol m^-2 d^-1) and the Coulombic efficiency (58.9 ± 0.8%).

Enhanced biodegradation of coal gasification wastewater with anaerobic biofilm on polyurethane (PU), powdered activated carbon (PAC), and biochar

The primary objective was to explore the feasibility of anaerobic biofilm on polyurethane (PU), powdered activated carbon (PAC), and biochar in strengthening anaerobic degradation of phenolic compounds and selected nitrogen heterocyclic compounds (NHCs) in coal gasification wastewater (CGW). When total phenols (TPh) was less than 300 mg/L, PAC-based biofilm was more efficient. Whereas, when the TPh concentration was more than 450 mg/L, PU-based biofilm performed the optimal degradation efficiency. Furthermore, microbial community structure analysis showed that PAC and biochar had little effect on the microbial community structure after 120 days of operation, while the addition of PU could lead to the enrichment of Giesbergeria, Caldisericum, Thauera, Methanolinea, and Methanoregula.

Natural freezing-thawing pretreatment of corn stalk for enhancing anaerobic digestion performance

Natural freezing-thawing (NFT) was proposed as a low energy input and alternative pretreatment method for high biomethane production from corn stalk (CS) by anaerobic digestion (AD). The CS was pretreated by freezing-thawing in winter season using different pretreatment time periods (7d, 14d, 21d and 28d) and solid-to-liquid ratios (1:2, 1:4, 1:6, 1:8 and 1:10). The results showed that CS pretreated for 21d coupled with a solid-to-liquid ratio of 1:6 achieved the best result among all pretreatment conditions. In this case, the biomethane yield and VS removal rate of CS reached the highest values of 253 mL·g_vs^-1 and 58.6%, respectively_, which were 40.5% and 27.4% higher than that of the untreated. It was also found that the predominant bacterial and archaeal at genus level in AD were Clostridium_sensu_stricto_1 (36.1%) and Methanobacterium (54.0%), respectively. This study provided that NFT is a simple pretreatment strategy for efficient AD bioconversion of CS to biomethane.

Microbiome digital signature of MCR genes - an in silico approach to study the diversity of methanogenic population in laboratory-developed and pilot-scale anaerobic digesters

The production of biogas by anaerobic digestion (AD) of organic/biological wastes has a firm place in sustainable energy production. A simple and cost-effective anaerobic jar at a laboratory scale is a prerequisite to study the microbial community involved in biomass conversion and releasing of methane gas. In this study, a simulation was carried out using a laboratory-modified anaerobic-jar-converted digester (AD1) with that of a commercial/pilot-scale anaerobic digester (AD2). Taxonomic profiling of biogas-producing communities by means of high-throughput methyl coenzyme-M reductase α-subunit (mcrA) gene amplicon sequencing provided high-resolution insights into bacterial and archaeal structures of AD assemblages and their linkages to fed substrates and process parameters. Commonly, the bacterial phyla Euryarchaeota, Chordata, Firmicutes and Proteobacteria appeared to dominate biogas communities in varying abundances depending on the apparent process conditions. Key micro-organisms identified from AD were Methanocorpusculum labreanum and Methanobacterium formicicum. Specific biogas production was found to be significantly correlating to Methanosarcinaceae. It can be implied from this study that the metagenomic sequencing data was able to dissect the microbial community structure in the digesters. The data gathered indicates that the anaerobic-jar system could throw light on the population dynamics of the methanogens at laboratory scale and its effectiveness at large-scale production of bio-methane. The genome sequence information of non-cultivable biogas community members, metagenome sequencing including assembly and binning strategies will be highly valuable in determining the efficacy of an anaerobic digester.

How Low Can You Go: Methane Production of Methanobacterium congolense at Low CO2 Concentrations

Autotrophic hydrogenotrophic methanogens use H2/CO2 as sole carbon and energy source. In contrast to H2, CO2 is present in high concentrations in environments dominated by methanogens e.g., anaerobic digesters (AD), and is therefore rarely considered to be a limiting factor. Nonetheless, potential CO2 limitation can be relevant in the process of biomethanation, a power-to-gas technology, where biogas is upgraded by the addition of H2 and ideally reduce the CO2 concentration in the produced biogas to 0-6%. H2 is effectively utilized by methanogens even at very low concentrations, but little is known about the impact of low CO2 concentrations on methanogenic activity. In this study, CO2 consumption and CH4 production kinetics under low CO2 concentrations were studied, using a hydrogenotrophic methanogen, Methanobacterium congolense, as model organism. We found that both cellular growth and methane production were limited at low CO2 concentrations (here expressed as Dissolved Inorganic Carbon, DIC). Maximum rates (V max) were reached at [DIC] of 100 mM (extrapolated), with a CO2 consumption rate of 69.2 fmol cell-1 d-1 and a CH4 production rate of 48.8 fmol cell-1 d-1. In our experimental setup, 80% of V max was achieved at [DIC] >9 mM. DIC half-saturation concentrations (K m) was about 2.5 mM for CO2 consumption and 2.2 mM for CH4 production. No CH4 production could be detected below 44.4 μM [DIC]. These data revealed that the limiting concentration of DIC may be much higher than that of H2 for a hydrogenotrophic methanogen. However, DIC is not a limiting factor in ADs running under standard operating conditions. For biomethanation, the results are applicable for both in situ and ex situ biomethanation reactors and show that biogas can be upgraded to concentrations of 2% CO2 (98% CH4) while still retaining 80% V max at pH 7.5 evaluated from M. congolense. Since DIC concentration can vary significantly with pH and pCO2 during biomethanation, monitoring DIC concentration through pH and pCO2 is therefore important for keeping optimal operational conditions for the biomethanation process.

Formate-removing inoculum dominated by Methanobacterium congolense supports succinate production from crude glycerol fermentation

We developed a formate-removing methanogenic inoculum (FRI) to facilitate succinate production from crude glycerol by Escherichia coli. FRI converted formate to methane, thereby enabling glycerol fermentation without additional electron acceptors under neutral pH. FRI was selectively enriched from sludge from the anaerobic digester of the Seonam sewage treatment plant (Seoul); this process was assessed via Illumina sequencing and scanning electron microscopy imaging. Methanobacterium congolense species occupied only 0.3% of the archaea community in the sludge and was enriched to 99.5% in complete FRI, wherein succinate-degrading bacteria were successfully eliminated. Co-culture with FRI improved glycerol fermentation and yielded 7.3 mM succinate from 28.7 mM crude glycerol, whereby FRI completely converted formate into methane. This study is the first to demonstrate methane production by M. congolense species, using formate. M. congolense-dominated FRI can serve as a renewable facilitator of waste feedstock fermentation and enable the production of commercially important compounds.

An extracellular [NiFe] hydrogenase mediating iron corrosion is encoded in a genetically unstable genomic island in Methanococcus maripaludis

Certain methanogens deteriorate steel surfaces through a process called microbiologically influenced corrosion (MIC). However, the mechanisms of MIC, whereby methanogens oxidize zerovalent iron (Fe⁰), are largely unknown. In this study, Fe⁰-corroding Methanococcus maripaludis strain OS7 and its derivative (strain OS7mut1) defective in Fe⁰-corroding activity were isolated. Genomic analysis of these strains demonstrated that the strain OS7mut1 contained a 12-kb chromosomal deletion. The deleted region, termed "MIC island", encoded the genes for the large and small subunits of a [NiFe] hydrogenase, the TatA/TatC genes necessary for the secretion of the [NiFe] hydrogenase, and a gene for the hydrogenase maturation protease. Thus, the [NiFe] hydrogenase may be secreted outside the cytoplasmic membrane, where the [NiFe] hydrogenase can make direct contact with Fe⁰, and oxidize it, generating hydrogen gas: Fe⁰ + 2 H⁺ → Fe²⁺ + H₂. Comparative analysis of extracellular and intracellular proteomes of strain OS7 supported this hypothesis. The identification of the MIC genes enables the development of molecular tools to monitor epidemiology, and to perform surveillance and risk assessment of MIC-inducing M. maripaludis.

Complete Genome Sequence of Clostridium kluyveri JZZ Applied in Chinese Strong-Flavor Liquor Production

Chinese strong-flavor liquor (CSFL), accounting for more than 70% of both Chinese liquor production and sales, was produced by complex fermentation with pit mud. Clostridium kluyveri, an important species coexisted with other microorganisms in fermentation pit mud (FPM), could produce caproic acid, which was subsequently converted to the key CSFL flavor substance ethyl caproate. In this study, we present the first complete genome sequence of C. kluyveri isolated from FPM. Clostridium kluyveri JZZ contains one circular chromosome and one circular plasmid with length of 4,454,353 and 58,581 bp, respectively. 4158 protein-coding genes were predicted and 2792 genes could be assigned with COG categories. It possesses the pathway predicted for biosynthesis of caproic acid with ethanol. Compared to other two C. kluyveri genomes, JZZ consists of longer chromosome with multiple gene rearrangements, and contains more genes involved in defense mechanisms, as well as DNA replication, recombination, and repair. Meanwhile, JZZ contains fewer genes involved in secondary metabolites biosynthesis, transport, and catabolism, including genes encoding Polyketide Synthases/Non-ribosomal Peptide Synthetases. Additionally, JZZ possesses 960 unique genes with relatively aggregating in defense mechanisms and transcription. Our study will be available for further research about C. kluyveri isolated from FPM, and will also facilitate the genetic engineering to increase biofuel production and improve fragrance flavor of CSFL.

Fascinating Fasciclins: A Surprisingly Widespread Family of Proteins that Mediate Interactions between the Cell Exterior and the Cell Surface

The Fasciclin 1 (FAS1) domain is an ancient structural motif in extracellular proteins present in all kingdoms of life and particularly abundant in plants. The FAS1 domain accommodates multiple interaction surfaces, enabling it to bind different ligands. The frequently observed tandem FAS1 arrangement might both positively and negatively regulate ligand binding. Additional protein domains and post-translational modifications are partially conserved between different evolutionary clades. Human FAS1 family members are associated with multiple aspects of health and disease. At the cellular level, mammalian FAS1 proteins are implicated in extracellular matrix structure, cell to extracellular matrix and cell to cell adhesion, paracrine signaling, intracellular trafficking and endocytosis. Mammalian FAS1 proteins bind to the integrin family of receptors and to protein and carbohydrate components of the extracellular matrix. FAS1 protein encoding plant genes exert effects on cellulosic and non-cellulosic cell wall structure and cellular signaling but to establish the modes of action for any plant FAS1 protein still requires biochemical experimentation. In fungi, eubacteria and archaea, the differential presence of FAS1 proteins in closely related organisms and isolated biochemical data suggest functions in pathogenicity and symbiosis. The inter-kingdom comparison of FAS1 proteins suggests that molecular mechanisms mediating interactions between cells and their environment may have evolved at the earliest known stages of evolution.

Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes

BACKGROUND

To elucidate biogas microbial communities and processes, the application of high-throughput DNA analysis approaches is becoming increasingly important. Unfortunately, generated data can only partialy be interpreted rudimentary since databases lack reference sequences.

RESULTS

Novel cellulolytic, hydrolytic, and acidogenic/acetogenic Bacteria as well as methanogenic Archaea originating from different anaerobic digestion communities were analyzed on the genomic level to assess their role in biomass decomposition and biogas production. Some of the analyzed bacterial strains were recently described as new species and even genera, namely Herbinix hemicellulosilytica T3/55^T, Herbinix luporum SD1D^T, Clostridium bornimense M2/40^T, Proteiniphilum saccharofermentans M3/6^T, Fermentimonas caenicola ING2-E5B^T, and Petrimonas mucosa ING2-E5A^T. High-throughput genome sequencing of 22 anaerobic digestion isolates enabled functional genome interpretation, metabolic reconstruction, and prediction of microbial traits regarding their abilities to utilize complex bio-polymers and to perform specific fermentation pathways. To determine the prevalence of the isolates included in this study in different biogas systems, corresponding metagenome fragment mappings were done. Methanoculleus bourgensis was found to be abundant in three mesophilic biogas plants studied and slightly less abundant in a thermophilic biogas plant, whereas Defluviitoga tunisiensis was only prominent in the thermophilic system. Moreover, several of the analyzed species were clearly detectable in the mesophilic biogas plants, but appeared to be only moderately abundant. Among the species for which genome sequence information was publicly available prior to this study, only the species Amphibacillus xylanus, Clostridium clariflavum, and Lactobacillus acidophilus are of importance for the biogas microbiomes analyzed, but did not reach the level of abundance as determined for M. bourgensis and D. tunisiensis.

CONCLUSIONS

Isolation of key anaerobic digestion microorganisms and their functional interpretation was achieved by application of elaborated cultivation techniques and subsequent genome analyses. New isolates and their genome information extend the repository covering anaerobic digestion community members.