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Castaño Plaza O, Loi QK, Herrera Diaz LF, Do DD. Adsorption Mechanism and Characteristic Temperatures of the Monolayer Adsorption of CO 2 on Graphite: The Role of Graphene Dimensions. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2024; 40:14570-14582. [PMID: 38963260 DOI: 10.1021/acs.langmuir.4c01428] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/05/2024]
Abstract
Although simulation results for gaseous adsorption on a surface of infinite extent, modeled with periodic conditions at the boundaries of the simulation box, agree with experimental data at high temperatures, simulated isotherms at temperatures below the triple point temperature show unphysical substeps because of the compromise of interactions within the box and interactions between the box and its mirror image boxes. This has been alleviated with surfaces of finite dimensions (Loi, Q. K.; Colloids Surf., A 2021, 622, 126690 and Castaño Plaza, O.; Langmuir 2023, 39 (21), 7456-7468) to account for free boundaries at the adsorbate patch on the surface, and the critical parameter of this model substrate is the size of the finite surface. If it is too small, the adsorbate patch does not model the physical reality; however, if it is too large, the computation time is excessive, making the simulation impractical. In this study, we used carbon dioxide/graphite as the model system to explore the effects of finite dimensions on the description of experimental data of Terlain, A.; Larher, Y. Surf. Sci. 1983, 125 (1), 304-311, especially for temperatures below the bulk triple point temperature. With the appropriate choice of graphene size, we derived the 2D triple point and 2D critical point temperatures of the monolayer, and most importantly, for temperatures below the 2D critical point temperature, the adsorption mechanism for the formation of the monolayer is due to the interplay between the boundary growth process and the vacancy filling. The extent of this interplay is found to depend on the fractional coverage of the surface.
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Affiliation(s)
- Octavio Castaño Plaza
- Energy and Resources Institute, Charles Darwin University, Darwin, NT 0909, Australia
| | - Quang K Loi
- Centre for Theoretical and Computational Molecular Science, Australian Institute for Bioengineering and Nanotechnology, The University of Queensland, St. Lucia, QLD 4072, Australia
| | - Luis F Herrera Diaz
- Energy and Resources Institute, Charles Darwin University, Darwin, NT 0909, Australia
| | - Duong D Do
- School of Chemical Engineering, The University of Queensland, St. Lucia, QLD 4072, Australia
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Castaño Plaza O, Loi QK, Herrera Diaz LF, Do DD, Nicholson D. Effects of a Free Adsorbate Boundary on the Description of an Argon Adsorbed Film on Graphite below the Bulk Triple Point. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2023; 39:7456-7468. [PMID: 37192409 DOI: 10.1021/acs.langmuir.3c00722] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
Monte Carlo simulations have been carried out to study argon adsorption on graphite at temperatures below the bulk triple point temperature, Ttr(bulk) = 83.8 K. Two models for graphite have been used to investigate the effects of an adsorbate patch with a free boundary on the layering temperatures, the two-dimensional (2D)-triple point and the 2D-critical point for the three adsorbate layers on the surface. The first model (S-model) has a planar surface of infinite extent in the two directions parallel to the surface, and the second is a finite (2D-patch model). Although simulations using both models describe the characteristic temperatures, only the 2D-patch model can represent the experimental isotherms accurately, and the condensation pressures at which first-order transitions occur, while simulations with the S-model yield many unphysical substeps that are not observed experimentally in the first layer adsorbate, which leads to a poor description of higher adsorbate layers. These results support the interpretation that boundary growth of an adsorbate patch is the mechanism for argon adsorption at temperatures below the bulk triple point temperature. Combining the results derived from this simulation study for temperatures below the bulk triple point temperature, with results reported in the literature for temperatures above Ttr(bulk) and experimental data, we have constructed a generic pattern for the adsorption isotherms of simple gases on graphite at temperatures ranging from well below the bulk triple point temperature up to the bulk critical temperature, a comprehensive description not widely recognized in the literature.
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Affiliation(s)
- Octavio Castaño Plaza
- Energy and Resources Institute, Charles Darwin University, Darwin, NT 0909, Australia
| | - Quang K Loi
- Centre for Theoretical and Computer Molecular Science, Australian Institute for the Bioengineering and Nanotechnology, St Lucia, QLD 4072, Australia
| | - Luis F Herrera Diaz
- Energy and Resources Institute, Charles Darwin University, Darwin, NT 0909, Australia
| | - D D Do
- School of Chemical Engineering, University of Queensland, St Lucia, QLD 4072, Australia
| | - D Nicholson
- School of Chemical Engineering, University of Queensland, St Lucia, QLD 4072, Australia
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Sorichetti V, Hugouvieux V, Kob W. Determining the Mesh Size of Polymer Solutions via the Pore Size Distribution. Macromolecules 2020. [DOI: 10.1021/acs.macromol.9b02166] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Valerio Sorichetti
- Laboratoire Charles Coulomb (L2C), Université Montpellier, CNRS, F-34095, Montpellier, France
- IATE, INRAE, CIRAD, Montpellier SupAgro, Université Montpellier, F-34060, Montpellier, France
| | - Virginie Hugouvieux
- IATE, INRAE, CIRAD, Montpellier SupAgro, Université Montpellier, F-34060, Montpellier, France
| | - Walter Kob
- Laboratoire Charles Coulomb (L2C), Université Montpellier, CNRS, F-34095, Montpellier, France
- Institut Universitaire de France
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Dilokekunakul W, Klomkliang N, Sakdaronnarong C, Chaemchuen S, Do DD, Nicholson D. Structure of methanol sub-monolayer on functionalized graphite at temperatures below the triple point. Colloids Surf A Physicochem Eng Asp 2019. [DOI: 10.1016/j.colsurfa.2019.05.048] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Herrera LF, Prasetyo L, Do DD. Characterisation of the absolute accessible volume of porous materials. ADSORPTION 2019. [DOI: 10.1007/s10450-019-00078-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
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Effects of temperature on methanol adsorption on functionalized graphite: Saturation of functional groups. Chem Eng Sci 2018. [DOI: 10.1016/j.ces.2018.04.063] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Phadungbut P, Herrera LF, Do DD, Tangsathitkulchai C, Nicholson D, Junpirom S. Computational methodology for determining textural properties of simulated porous carbons. J Colloid Interface Sci 2017; 503:28-38. [PMID: 28500937 DOI: 10.1016/j.jcis.2017.05.004] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2017] [Revised: 05/02/2017] [Accepted: 05/02/2017] [Indexed: 11/30/2022]
Abstract
We have refined and improved the computational efficiency of the TriPOD technique, used to determine the accessible characteristics of porous solids with a known configuration of solid atoms. Instead of placing a probe molecule randomly, as described in the original version of the TriPOD method (Herrera et al., 2011), we implemented a scheme for dividing the porous solid into 3D-grids and computing the solid-fluid potential energies at these grid points. We illustrate the potential of this technique in determining the total pore volume, the surface area and the pore size distribution of various molecular models of porous carbons, ranging from simple pore models to a more complex simulated porous carbon model; the latter is constructed from a canonical Monte Carlo simulation of carbon microcrystallites of various sizes.
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Affiliation(s)
- Poomiwat Phadungbut
- School of Chemical Engineering, University of Queensland, St. Lucia, QLD 4072, Australia; Department of Chemical Engineering, Mahidol University, Nakhon Pathom 73170, Thailand
| | - L F Herrera
- School of Engineering and Information Technology, Charles Darwin University, Darwin, NT 0909, Australia
| | - D D Do
- School of Chemical Engineering, University of Queensland, St. Lucia, QLD 4072, Australia.
| | - Chaiyot Tangsathitkulchai
- School of Chemical Engineering, Suranaree University of Technology, Nakhon Ratchasima 30000, Thailand
| | - D Nicholson
- School of Chemical Engineering, University of Queensland, St. Lucia, QLD 4072, Australia
| | - Supunnee Junpirom
- School of Chemical Engineering, Suranaree University of Technology, Nakhon Ratchasima 30000, Thailand
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Phadungbut P, Fan C, Do D, Nicholson D, Tangsathitkulchai C. Determination of absolute adsorption for argon on flat surfaces under sub- and supercritical conditions. Colloids Surf A Physicochem Eng Asp 2015. [DOI: 10.1016/j.colsurfa.2015.04.011] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Colón YJ, Snurr RQ. High-throughput computational screening of metal-organic frameworks. Chem Soc Rev 2015; 43:5735-49. [PMID: 24777001 DOI: 10.1039/c4cs00070f] [Citation(s) in RCA: 187] [Impact Index Per Article: 20.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
There is an almost unlimited number of metal-organic frameworks (MOFs). This creates exciting opportunities but also poses a problem: how do we quickly find the best MOFs for a given application? Molecular simulations have advanced sufficiently that many MOF properties - especially structural and gas adsorption properties - can be predicted computationally, and molecular modeling techniques are now used increasingly to guide the synthesis of new MOFs. With increasing computational power and improved simulation algorithms, it has become possible to conduct high-throughput computational screening to identify promising MOF structures and uncover structure-property relations. We review these efforts and discuss future directions in this new field.
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Affiliation(s)
- Yamil J Colón
- Department of Chemical and Biological Engineering, Northwestern University, Evanston, IL 60208, USA.
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Generation of reasonable atomic model structures of amorphous materials for atomic scale simulations. COMPUT THEOR CHEM 2015. [DOI: 10.1016/j.comptc.2015.02.009] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Li Y, Yu J. New stories of zeolite structures: their descriptions, determinations, predictions, and evaluations. Chem Rev 2014; 114:7268-316. [PMID: 24844459 DOI: 10.1021/cr500010r] [Citation(s) in RCA: 272] [Impact Index Per Article: 27.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Affiliation(s)
- Yi Li
- State Key Laboratory of Inorganic Synthesis and Preparative Chemistry, College of Chemistry, Jilin University , Qianjin Street 2699, Changchun 130012, China
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Klomkliang N, Do DD, Nicholson D. On the hysteresis loop and equilibrium transition in slit-shaped ink-bottle pores. ADSORPTION 2013. [DOI: 10.1007/s10450-013-9569-5] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Characterization and comparison of pore landscapes in crystalline porous materials. J Mol Graph Model 2013; 44:208-19. [PMID: 23876827 DOI: 10.1016/j.jmgm.2013.05.007] [Citation(s) in RCA: 60] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2013] [Revised: 05/03/2013] [Accepted: 05/11/2013] [Indexed: 11/23/2022]
Abstract
Crystalline porous materials have many applications, including catalysis and separations. Identifying suitable materials for a given application can be achieved by screening material databases. Such a screening requires automated high-throughput analysis tools that characterize and represent pore landscapes with descriptors, which can be compared using similarity measures in order to select, group and classify materials. Here, we discuss algorithms for the calculation of two types of pore landscape descriptors: pore size distributions and stochastic rays. These descriptors provide histogram representations that encode the geometrical properties of pore landscapes. Their calculation involves the Voronoi decomposition as a technique to map and characterize accessible void space inside porous materials. Moreover, we demonstrate pore landscape comparisons for materials from the International Zeolite Association (IZA) database of zeolite frameworks, and illustrate how the choice of pore descriptor and similarity measure affects the perspective of material similarity exhibiting a particular emphasis and sensitivity to certain aspects of structures.
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On the hysteresis and equilibrium phase transition of argon and benzene adsorption in finite slit pores: Monte Carlo vs. Bin-Monte Carlo. Chem Eng Sci 2013. [DOI: 10.1016/j.ces.2012.11.003] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Klomkliang N, Do DD, Nicholson D. Affinity and Packing of Benzene, Toluene, and p-Xylene Adsorption on a Graphitic Surface and in Pores. Ind Eng Chem Res 2012. [DOI: 10.1021/ie300121p] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Nikom Klomkliang
- School of Chemical Engineering, University of Queensland, St. Lucia, Qld 4072, Australia
- School of Chemical Engineering, Suranaree University of Technology, Nakhon Ratchasima 30000, Thailand
| | - D. D. Do
- School of Chemical Engineering, University of Queensland, St. Lucia, Qld 4072, Australia
| | - D. Nicholson
- School of Chemical Engineering, University of Queensland, St. Lucia, Qld 4072, Australia
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Liu Z, Horikawa T, Do DD, Nicholson D. Packing effects on argon and methanol adsorption inside graphitic cylindrical and slit pores: A GCMC simulation study. J Colloid Interface Sci 2012; 368:474-87. [PMID: 22082798 DOI: 10.1016/j.jcis.2011.10.046] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2011] [Revised: 10/13/2011] [Accepted: 10/14/2011] [Indexed: 11/30/2022]
Affiliation(s)
- Zhongjun Liu
- School of Chemical Engineering, University of Queensland, St. Lucia, Qld 4072, Australia
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17
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Sarkisov L, Harrison A. Computational structure characterisation tools in application to ordered and disordered porous materials. MOLECULAR SIMULATION 2011. [DOI: 10.1080/08927022.2011.592832] [Citation(s) in RCA: 416] [Impact Index Per Article: 32.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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A method for the determination of accessible surface area, pore volume, pore size and its volume distribution for homogeneous pores of different shapes. ADSORPTION 2011. [DOI: 10.1007/s10450-010-9314-2] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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19
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A novel and consistent method (TriPOD) to characterize an arbitrary porous solid for its accessible volume, accessible geometrical surface area and accessible pore size. ADSORPTION 2010. [DOI: 10.1007/s10450-010-9289-z] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Chen YF, Babarao R, Sandler SI, Jiang JW. Metal-organic framework MIL-101 for adsorption and effect of terminal water molecules: from quantum mechanics to molecular simulation. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2010; 26:8743-8750. [PMID: 20102235 DOI: 10.1021/la904502h] [Citation(s) in RCA: 62] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
MIL-101 is a chromium terephthalate-based mesoscopic metal-organic framework and one of the most porous materials reported to date. In this study, we investigate the adsorption of CO(2) and CH(4) in dehydrated and hydrated MIL-101 and the effect of terminal water molecules on adsorption. The atomistic structures of MIL-101 are constructed from experimental crystallographic data, energy minimization, and quantum mechanical optimization. The adsorption isotherm of CO(2) predicted from molecular simulation agrees well with experiment and is relatively insensitive to the method (Merz-Kollman or Mulliken) used to estimate the framework charges. Both the united-atom and five-site models of CH(4) predict the isotherm fairly well, though the former overestimates and the latter underestimates. Adsorption first occurs in the microporous supertetrahedra at low pressures and then in the mesoscopic cages with increasing pressure. In the dehydrated MIL-101, more adsorbate molecules are located near the exposed Cr(2) sites than the fluorine saturated Cr(1) sites. The terminal water molecules in the hydrated MIL-101 act as additional interaction sites and enhance adsorption at low pressures. This enhancement is more pronounced for CO(2) than for CH(4), because CO(2) is quadrapolar and interacts more strongly with the terminal water molecules. At high pressures, however, the reverse is observed, as the presence of terminal water molecules reduces free volume and adsorption. For the adsorption of CO(2)/CH(4) mixture, a higher selectivity is found in the hydrated MIL-101.
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Affiliation(s)
- Y F Chen
- Department of Chemical and Biomolecular Engineering, National University of Singapore, 117576, Singapore
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Do DD, Herrera L, Fan C, Wongkoblap A, Nicholson D. The role of accessibility in the characterization of porous solids and their adsorption properties. ADSORPTION 2009. [DOI: 10.1007/s10450-009-9203-8] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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