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Morales-Reina S, Giri C, Leclercq M, Vela-Gallego S, de la Torre I, Castón JR, Surin M, de la Escosura A. Programmed Recognition between Complementary Dinucleolipids To Control the Self-Assembly of Lipidic Amphiphiles. Chemistry 2020; 26:1082-1090. [PMID: 31729787 DOI: 10.1002/chem.201904217] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2019] [Revised: 10/25/2019] [Indexed: 01/01/2023]
Abstract
One of the major goals in systems chemistry is to create molecular assemblies with emergent properties that are characteristic of life. An interesting approach toward this goal is based on merging different biological building blocks into synthetic systems with properties arising from the combination of their molecular components. The covalent linkage of nucleic acids (or their constituents: nucleotides, nucleosides and nucleobases) with lipids in the same hybrid molecule leads, for example, to the so-called nucleolipids. Herein, we describe nucleolipids with a very short sequence of two nucleobases per lipid, which, in combination with hydrophobic effects promoted by the lipophilic chain, allow control of the self-assembly of lipidic amphiphiles to be achieved. The present work describes a spectroscopic and microscopy study of the structural features and dynamic self-assembly of dinucleolipids that contain adenine or thymine moieties, either pure or in mixtures. This approach leads to different self-assembled nanostructures, which include spherical, rectangular and fibrillar assemblies, as a function of the sequence of nucleobases and chiral effects of the nucleolipids involved. We also show evidence that the resulting architectures can encapsulate hydrophobic molecules, revealing their potential as drug delivery vehicles or as compartments to host interesting chemistries in their interior.
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Affiliation(s)
- Sara Morales-Reina
- Department of Organic Chemistry, Universidad Autónoma de Madrid, Campus de Cantoblanco, 28049, Madrid, Spain
| | - Chandan Giri
- Department of Organic Chemistry, Universidad Autónoma de Madrid, Campus de Cantoblanco, 28049, Madrid, Spain
| | - Maxime Leclercq
- Laboratory for Chemistry of Novel Materials, Center for Innovation in Materials and Polymers, University of Mons-UMONS, 20 Place du Parc, 7000, Mons, Belgium
| | - Sonia Vela-Gallego
- Department of Organic Chemistry, Universidad Autónoma de Madrid, Campus de Cantoblanco, 28049, Madrid, Spain
| | - Isabel de la Torre
- Department of Organic Chemistry, Universidad Autónoma de Madrid, Campus de Cantoblanco, 28049, Madrid, Spain
| | - José R Castón
- Department of Structure of Macromolecules, Centro Nacional de Biotecnología/CSIC, Campus de Cantoblanco, 28049, Madrid, Spain
| | - Mathieu Surin
- Laboratory for Chemistry of Novel Materials, Center for Innovation in Materials and Polymers, University of Mons-UMONS, 20 Place du Parc, 7000, Mons, Belgium
| | - Andrés de la Escosura
- Department of Organic Chemistry, Universidad Autónoma de Madrid, Campus de Cantoblanco, 28049, Madrid, Spain.,Institute for Advanced Research in Chemistry (IAdChem), Campus de Cantoblanco, 28049, Madrid, Spain
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Rouquette M, Lepetre-Mouelhi S, Couvreur P. Adenosine and lipids: A forced marriage or a love match? Adv Drug Deliv Rev 2019; 151-152:233-244. [PMID: 30797954 DOI: 10.1016/j.addr.2019.02.005] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2019] [Revised: 02/12/2019] [Accepted: 02/13/2019] [Indexed: 12/21/2022]
Abstract
Adenosine is a fascinating compound, crucial in many biochemical processes: this ubiquitous nucleoside serves as an essential building block of RNA, is also a component of ATP and regulates numerous pathophysiological mechanisms via binding to four extracellular receptors. Due to its hydrophilic nature, it belongs to a different world than lipids, and has no affinity for them. Since the 1970's, however, new discoveries have emerged and prompted the scientific community to associate adenosine with the lipid family, especially via liposomal preparations and bioconjugation. This seems to be an arranged marriage, but could it turn into a true love match? This review considered all types of unions established between adenosine and lipids. Even though exciting supramolecular structures were observed with adenosine-lipid conjugates, as well as with liposomal preparations which resulted in promising pre-clinical results, the translation of these technologies to the clinic is still limited.
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Swastika, Chaturvedi S, Kaul A, Hazari PP, Jha P, Pal S, Lal S, Singh B, Barthélémy P, Mishra AK. Evaluation of BBB permeable nucleolipid (NLDPU): A di-C15-ketalised palmitone appended uridine as neuro-tracer for SPECT. Int J Pharm 2019; 565:269-282. [DOI: 10.1016/j.ijpharm.2019.04.074] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2018] [Revised: 04/16/2019] [Accepted: 04/27/2019] [Indexed: 12/17/2022]
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Baillet J, Desvergnes V, Hamoud A, Latxague L, Barthélémy P. Lipid and Nucleic Acid Chemistries: Combining the Best of Both Worlds to Construct Advanced Biomaterials. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2018; 30:1705078. [PMID: 29341288 DOI: 10.1002/adma.201705078] [Citation(s) in RCA: 42] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2017] [Revised: 10/20/2017] [Indexed: 06/07/2023]
Abstract
Hybrid synthetic amphiphilic biomolecules are emerging as promising supramolecular materials for biomedical and technological applications. Herein, recent progress in the field of nucleic acid based lipids is highlighted with an emphasis on their molecular design, synthesis, supramolecular properties, physicochemical behaviors, and applications in the field of health science and technology. In the first section, the design and the study of nucleolipids are in focus and then the glyconucleolipid family is discussed. In the last section, recent contributions of responsive materials involving nucleolipids and their use as smart drug delivery systems are discussed. The supramolecular materials generated by nucleic acid based lipids open new challenges for biomedical applications, including the fields of medicinal chemistry, biosensors, biomaterials for tissue engineering, drug delivery, and the decontamination of nanoparticles.
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Affiliation(s)
- Julie Baillet
- ARNA Laboratory, INSERM, U1212, CNRS UMR 5320, Université de Bordeaux, F-33076, Bordeaux, France
| | - Valérie Desvergnes
- ARNA Laboratory, INSERM, U1212, CNRS UMR 5320, Université de Bordeaux, F-33076, Bordeaux, France
| | - Aladin Hamoud
- ARNA Laboratory, INSERM, U1212, CNRS UMR 5320, Université de Bordeaux, F-33076, Bordeaux, France
| | - Laurent Latxague
- ARNA Laboratory, INSERM, U1212, CNRS UMR 5320, Université de Bordeaux, F-33076, Bordeaux, France
| | - Philippe Barthélémy
- ARNA Laboratory, INSERM, U1212, CNRS UMR 5320, Université de Bordeaux, F-33076, Bordeaux, France
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5
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Aimé A, Beztsinna N, Patwa A, Pokolenko A, Bestel I, Barthélémy P. Quantum dot lipid oligonucleotide bioconjugates: toward a new anti-microRNA nanoplatform. Bioconjug Chem 2014; 24:1345-55. [PMID: 23888900 DOI: 10.1021/bc400157z] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
The construction of new nanotools is presented here using the example of fluorescent semiconductor nanocrystals, quantum dots (QDs). In this study, the implementation of the new lipid oligonucleotide conjugate-functionalized quantum dots (LON-QDs) is realized in four steps: (i) the synthesis of the lipid oligonucleotide conjugates (LONs), (ii) the encapsulation of QDs by nucleolipids and LONs, (iii) the study of the duplex formation of LON-QDs with the complementary ON partners, and (iv) the cellular uptake of the LON-QD platform and hybridization with the target ONs (microRNA and miR-21).
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Cho E, Kim H, Yang JE, Jun BH, Paik SR, Jung S. Supramolecular self-assembled aggregates formed by pentacosa-10,12-diynyl amidomethyl-β-cyclodextrin. Carbohydr Res 2014; 391:37-42. [DOI: 10.1016/j.carres.2014.03.022] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2014] [Revised: 03/28/2014] [Accepted: 03/31/2014] [Indexed: 10/25/2022]
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Patwa A, Salgado G, Dole F, Navailles L, Barthélémy P. Tuning molecular interactions in lipid-oligonucleotides assemblies via locked nucleic acid (LNA)-based lipids. Org Biomol Chem 2014; 11:7108-12. [PMID: 24065175 DOI: 10.1039/c3ob41707g] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Hybrid nucleotide-lipids containing locked nucleic acid (LNA) show enhanced hybridization properties with complementary single strand RNAs compared to DNA lipid analogues. The LNA adenosine lipid features unique binding properties with a high binding affinity for poly-uridine and the entropically driven formation of a stable complex (K(d) ≈ 43 nM). Enhanced hybridization properties of LNA-based lipids should be applicable for the development of oligonucleotide (ON) delivery systems or as small molecule binders to RNA for novel therapeutic strategies.
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Affiliation(s)
- Amit Patwa
- Univ. Bordeaux, ARNA laboratory, F-33076 Bordeaux, France.
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Zhang Y, Xin X, Shen J, Tang W, Ren Y, Wang L. Biodegradable, multiple stimuli-responsive sodium deoxycholate–amino acids–NaCl mixed systems for dye delivery. RSC Adv 2014. [DOI: 10.1039/c4ra13353f] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023] Open
Abstract
Multiple stimuli-responsiveness of NaDC–amino acid–NaCl mixed systems.
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Affiliation(s)
- Yongjie Zhang
- National Engineering Technology Research Center for Colloidal Materials
- Shandong University
- Jinan, P. R. China
- Key Laboratory of Colloid and Interface Chemistry (Shandong University)
- Ministry of Education
| | - Xia Xin
- National Engineering Technology Research Center for Colloidal Materials
- Shandong University
- Jinan, P. R. China
- Key Laboratory of Colloid and Interface Chemistry (Shandong University)
- Ministry of Education
| | - Jinglin Shen
- Key Laboratory of Colloid and Interface Chemistry (Shandong University)
- Ministry of Education
- Jinan, P. R. China
| | - Weiyue Tang
- China Research Institute of Daily Chemical Industry
- Taiyuan Shanxi, P. R. China
| | - Yingjie Ren
- China Research Institute of Daily Chemical Industry
- Taiyuan Shanxi, P. R. China
| | - Lin Wang
- Key Laboratory of Colloid and Interface Chemistry (Shandong University)
- Ministry of Education
- Jinan, P. R. China
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Luvino D, Khiati S, Oumzil K, Rocchi P, Camplo M, Barthélémy P. Efficient delivery of therapeutic small nucleic acids to prostate cancer cells using ketal nucleoside lipid nanoparticles. J Control Release 2013; 172:954-61. [DOI: 10.1016/j.jconrel.2013.09.006] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2013] [Revised: 09/02/2013] [Accepted: 09/05/2013] [Indexed: 01/19/2023]
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Mukai M, Minamikawa H, Aoyagi M, Asakawa M, Shimizu T, Kogiso M. A hydro/organo/hybrid gelator: A peptide lipid with turning aspartame head groups. J Colloid Interface Sci 2013; 395:154-60. [DOI: 10.1016/j.jcis.2012.12.060] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2012] [Revised: 12/12/2012] [Accepted: 12/13/2012] [Indexed: 10/27/2022]
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Taib N, Aimé A, Houmadi S, Castano S, Barthélémy P, Laguerre M, Bestel I. Chemical details on nucleolipid supramolecular architecture: molecular modeling and physicochemical studies. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2012; 28:7452-7460. [PMID: 22482866 DOI: 10.1021/la300744x] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Nucleolipids are currently under investigation as vectors for oligonucleotides (ON) delivery thanks to their supramolecular organization properties and their ability to develop specific interactions (i.e., stacking and potential Watson and Crick hydrogen bonds) for lipoplexes formation. To investigate the factors that govern the interaction events at a molecular level and optimize nucleolipid chemical structures, physicochemical experiments (tensiometry, AFM, BAM, and ellipsometry) combined with molecular dynamics simulation were performed on a series of zwitterionic nucleolipids (PUPC, DPUPC, PAPC) featuring a phosphocholine chain (PC). After construction and initial equilibration, simulations of pure nucleolipid bilayers were run for 100 ns at constant temperature and pressure, and their properties were compared to experimental data and to natural dipalmitoylphosphatidylcholine (DPPC) bilayers. Nucleolipid-based membranes are significantly more ordered and compact than DPPC bilayers mainly due to the presence of many intermolecular interactions between nucleoside polar heads. The hydrophilic phosphocholine moieties connected to the 5' hydroxyls are located above the bilayers, penalizing nucleic bases accessibility for further interactions with ON. Hence, a neutral nucleolipid (PUOH) without hydrophilic phosphocholine was inserted in the membranes. Simulations and experimental analysis of nucleolipid membranes in interaction with a single strand RNA structure indicate that PUOH interacts with ON in the subphase. This study demonstrates that molecular modeling can be used to determine the interactions between oligonucleotide and nucleolipids.
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Affiliation(s)
- Nada Taib
- Université Bordeaux Segalen, Bordeaux, F-33076, France
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