Nanomechanics of surface DNA switches probed by captive contact angle

Automatic Sensing Setup for Methamphetamine Based on the Reactional Wettability Variation Strategy

An automatic setup for reactional wettability variation (RWV) was developed by interlinking liquid selection and transportation, object movement, and image recognition. In this way, the performance of the RWV strategy is updated to a nearly unmanned control manner with the example of methamphetamine and its aptamer. On the automatic RWV detection setup, the sensing surface acts similarly as before. The aptamer-based sensing surface resulted from the breakdown of the hydrophobic basis. The hydrophobicity is constructed on the metastable aptamer layer, which is responsive to the corresponding target. Methamphetamine interacts with its corresponding aptamer and destroys the basis of the hydrophobicity. A decrease in contact angle indicates the existence of methamphetamine. The RWV phenomenon is also affected by concentration and temperature. The development of an automatic detection ability would bring new possibilities to the surface reaction on smarter detection.

BMP6 binding to heparin and heparan sulfate is mediated by N-terminal and C-terminal clustered basic residues

BACKGROUND

The bone morphogenetic protein 6 (BMP6) is a crucial inducer of hepcidin, the peptide hormone that regulates the iron availability in our body. Hepcidin expression is influenced by hepatic heparan sulfate (HS) and by heparin administration, suggesting BMP6 interaction with heparin/HS. The BMP2/4 subfamily has been deeply characterized to have a N-terminal heparin/HS binding domain (HBD), whose basic residues contact the sulfate groups on heparin and HS. Such detailed characterization is still required for other, structurally different BMPs, including BMP6.

METHODS

BMP6 peptides encompassing potential HBDs were analysed on heparin-functionalized plates and microcantilevers, and on membrane HS expressing CHO-K1 cells. Monomeric wild-type BMP6 and mutants were produced, substituting the basic residues with non-charged ones, and their affinity to the heparin-column was measured. The BMP6-heparin interaction was also predicted at atomic level by in silico molecular dynamics.

RESULTS

N-terminal and C-terminal BMP6 peptides showed high heparin affinity in solid-phase assays. The mutation of the two sites (R5L, R6S, R7L and K126N, K127N, R129S) abolished the heparin-binding activity of the recombinant monomeric BMP6. Monomeric BMP6 and peptides specifically bound to membrane HS of CHO-K1 cells through the same domains. Molecular dynamic studies supported the role of the two HBDs, suggesting a cooperative behaviour.

CONCLUSIONS

In BMP6, N-terminal (R5, R6, R7) and C-terminal (K126, K127, R129) domains mediate the interaction with heparin and HS.

GENERAL SIGNIFICANCE

This study provides the molecular mechanism supporting the use of heparin to sequester BMP6 and inhibit hepcidin expression, a novel clinical approach for high-hepcidin iron disorders.

Wettability read-out strategy for aptamer target binding based on a recognition/hydrophobic bilayer surface

We established a wettability read-out strategy for an aptasensor with a bilayer surface, using hydrophobicity reduction as the signal. The signal was induced by a fracture of the nanoneedle layer resulting from recognition by the supporting aptamer layer. The kinetics and influencing factors of this process were investigated with time curves.

A nanoneedle-based reactional wettability variation sensor array for on-site detection of metal ions with a smartphone

An enhancement of the reactional wettability variation (RWV) sensing strategy is achieved based on the wettability switch of a nanoneedle surface. The sensor unit is formed by coating hydrophobic azoimidazole compounds, as the responder compounds onto the originally hydrophilic surface of cobalt hydroxide nanoneedles. The complexation reaction between metal ions and azoimidazole ligands etches the hydrophobic coating and switches the surface wettability, making the surface hydrophilic again. This switch is revealed by a decrease in the static contact angle (CA) and an increase in the sliding angle of the surface. The reactivity is tuned by the derivatization and conformational manipulation of the azoimidazole compounds. A sensor array composed of six as-tuned sensor units is constructed to distinguish among the species and concentrations of Fe³⁺, Ni²⁺ and La³⁺ at a low limit of 10^-6 M using the chemometric method of principal component analysis (PCA). In addition, a new on-site detection strategy is developed based on PCA of the sliding angle, which can be measured conveniently and swiftly with a smartphone app and a commercially available setup. The application of the general RWV strategy is envisioned to open new possibilities for on-site detection.

DNA Quadruple Helices in Nanotechnology

DNA has played an early and powerful role in the development of bottom-up nanotechnologies, not least because of DNA's precise, predictable, and controllable properties of assembly on the nanometer scale. Watson-Crick complementarity has been used to build complex 2D and 3D architectures and design a number of nanometer-scale systems for molecular computing, transport, motors, and biosensing applications. Most of such devices are built with classical B-DNA helices and involve classical A-T/U and G-C base pairs. However, in addition to the above components underlying the iconic double helix, a number of alternative pairing schemes of nucleobases are known. This review focuses on two of these noncanonical classes of DNA helices: G-quadruplexes and the i-motif. The unique properties of these two classes of DNA helix have been utilized toward some remarkable constructions and applications: G-wires; nanostructures such as DNA origami; reconfigurable structures and nanodevices; the formation and utilization of hemin-utilizing DNAzymes, capable of generating varied outputs from biosensing nanostructures; composite nanostructures made up of DNA as well as inorganic materials; and the construction of nanocarriers that show promise for the therapeutics of diseases.

Graphene as Barrier to Prevent Volume Increment of Air Bubbles over Silicone Polymer in Aqueous Environment

The interaction of air bubbles with surfaces immersed in water is of fundamental importance in many fields of application ranging from energy to biology. However, many aspects of this topic such as the stability of surfaces in contact with bubbles remain unexplored. For this reason, in this work, we investigate the interaction of air bubbles with different kinds of dispersive surfaces immersed in water. The surfaces studied were polydimethylsiloxane (PDMS), graphite, and single layer graphene/PDMS composite. X-ray photoelectron spectroscopy (XPS) analysis allows determining the elemental surface composition, while Raman spectroscopy was used to assess the effectiveness of graphene monolayer transfer on PDMS. Atomic force microscopy (AFM) was used to study the surface modification of samples immersed in water. The surface wettability has been investigated by contact angle measurements, and the stability of the gas bubbles was determined by captive contact angle (CCA) measurements. CCA measurements show that the air bubble on graphite surface exhibits a stable behavior while, surprisingly, the volume of the air bubble on PDMS increases as a function of immersion time (bubble dynamic evolution). Indeed, the air bubble volume on the PDMS rises by increasing immersion time in water. The experimental results indicate that the dynamic evolution of air bubble in contact with PDMS is related to the rearrangement of surface polymer chains via the migration of the polar groups. On the contrary, when a graphene monolayer is present on PDMS, it acts as an absolute barrier suppressing the dynamic evolution of the bubble and preserving the optical transparency of PDMS.

Nanomedicine delivery: does protein corona route to the target or off road?

Nanomedicine aims to find novel solutions for urgent biomedical needs. Despite this, one of the most challenging hurdles that nanomedicine faces is to successfully target therapeutic nanoparticles to cells of interest in vivo. As for any biomaterials, once in vivo, nanoparticles can interact with plasma biomolecules, forming new entities for which the name protein coronas (PCs) have been coined. The PC can influence the in vivo biological fate of a nanoparticle. Thus for guaranteeing the desired function of an engineered nanomaterial in vivo, it is crucial to dissect its PC in terms of formation and evolution within the body. In this contribution we will review the 'good' and 'bad' sides of the PC, starting from the scientific aspects to the technological applications.

Cavitand-grafted silicon microcantilevers as a universal probe for illicit and designer drugs in water

The direct, clean, and unbiased transduction of molecular recognition into a readable and reproducible response is the biggest challenge associated to the use of synthetic receptors in sensing. All possible solutions demand the mastering of molecular recognition at the solid-liquid interface as prerequisite. The socially relevant issue of screening amine-based illicit and designer drugs is addressed by nanomechanical recognition at the silicon-water interface. The methylamino moieties of different drugs are all first recognized by a single cavitand receptor through a synergistic set of weak interactions. The peculiar recognition ability of the cavitand is then transferred with high fidelity and robustness on silicon microcantilevers and harnessed to realize a nanomechanical device for label-free detection of these drugs in water.

Scanning electrochemical microscopy for study of aptamer-thrombin interfacial interactions on gold disk microelectrodes

A feasibility for the determination of thrombin on gold disk microelectrodes (GDMs) using scanning electrochemical microscopy (SECM) is reported. The assembly process step-by-step of thrombin aptasensor on GDMs is monitored by SECM. SECM analysis reveals the immobilization of thrombin aptamers on GDMs. The interaction between thrombin aptamers and thrombin on GDMs is imaged by SECM with feedback mode using ferrocenemethanol as an electrochemical mediator. The formation of thrombin/thrombin aptamer complex on GDMs results in a decrease in the tip peak current on spatial SECM images. This method is able to linearly and selectively detect thrombin over a linear range from 10(-12) to 10(-5)M with a detection limit of 6.07 fM.