1
|
Ma C, Zhao T, Baoyin T, Han X, Frey B, Yang J, Dong S. Long-term grazing reduces soil fungal network complexity but enhances plant-soil microbe network connectivity in a semi-arid grassland. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 954:176498. [PMID: 39326755 DOI: 10.1016/j.scitotenv.2024.176498] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2024] [Revised: 09/20/2024] [Accepted: 09/23/2024] [Indexed: 09/28/2024]
Abstract
Grazing plays a significant role in shaping both aboveground vegetation and belowground microbial communities in arid and semi-arid grasslands, which in turn affects ecosystem functions and sustainability. Therefore, it was essential to implement effective grazing management practices to preserve ecological balance and support sustainable development in these delicate environments. To optimize the traditional continuous grazing policy, we conducted a 10-year seasonal grazing experiment with five treatments in a typical grassland in northern China: no grazing (NG), continuous summer grazing (CG), and three seasonal grazing treatments (G57 in May and July, G68 in June and August, and G79 in July and September). Our study found that although grazing reduced plant community biomass, G68 treatment maintained high plant height and community diversity (P < 0.05). Grazing did not affect soil bacterial and archaeal alpha diversity, but CG treatment reduced soil fungal diversity (P < 0.05). CG reduced the archaeal network's vertices (which represent microbial taxa, OTUs) and connections (ecological interactions between taxa), but seasonal grazing increased its complexity. Furthermore, grazing did not change bacterial networks but enhanced cross-domain interactions (relationships between different biological groups) of plant-soil fungi and plant-soil archaea. Overall, we used the Mantel test to find that soil microbial diversity was positively correlated with soil physicochemical properties rather than plant community characteristics after grazing. These findings are beneficial for the optimization of sustainable grassland management policies and the protection of plant and soil biodiversity.
Collapse
Affiliation(s)
- Chunhui Ma
- School of Grassland Science, Beijing Forestry University, Beijing 100083, China
| | - Tianqi Zhao
- Yinshanbeilu Grassland Eco-hydrology National Observation and Research Station, China Institute of Water Resources and Hydropower Research, Beijing 100038, China
| | - Taogetao Baoyin
- School of Ecology and Environment, Inner Mongolia University, Hohhot 010021, China
| | - Xingguo Han
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zurich, Birmensdorf 8903, Switzerland
| | - Beat Frey
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zurich, Birmensdorf 8903, Switzerland
| | - Juejie Yang
- School of Grassland Science, Beijing Forestry University, Beijing 100083, China.
| | - Shikui Dong
- School of Grassland Science, Beijing Forestry University, Beijing 100083, China.
| |
Collapse
|
2
|
Qiao J, Zheng J, Li S, Zhang F, Zhang B, Zhao M. Impact of climate warming on soil microbial communities during the restoration of the inner Mongolian desert steppe. Front Microbiol 2024; 15:1458777. [PMID: 39309524 PMCID: PMC11412859 DOI: 10.3389/fmicb.2024.1458777] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2024] [Accepted: 08/23/2024] [Indexed: 09/25/2024] Open
Abstract
Introduction Grazer exclosure is widely regarded as an effective measure for restoring degraded grasslands, having positive effects on soil microbial diversity. The Intergovernmental Panel on Climate Change (IPCC) predicts that global surface temperatures will increase by 1.5-4.5°C by the end of the 21st century, which may affect restoration practices for degraded grasslands. This inevitability highlights the urgent need to study the effect of temperature on grassland soil microbial communities, given their critical ecological functions. Methods Here, we assessed the effects of heavy grazing (control), grazer exclosure, and grazer exclosure plus warming by 1.5°C on soil microbial community diversity and network properties as well as their relationships to soil physicochemical properties. Results and discussion Our results showed that grazer closure increased soil microbial richness relative to heavy grazing controls. Specifically, bacterial richness increased by 7.9%, fungal richness increased by 20.2%, and the number of fungal network nodes and edges increased without altering network complexity and stability. By contrast, grazer exclosure plus warming decreased bacterial richness by 9.2% and network complexity by 12.4% compared to heavy grazing controls, while increasing fungal network complexity by 25.8%. Grazer exclosure without warming increased soil ammonium nitrogen content, while warming increased soil nitrate nitrogen content. Soil pH and organic carbon were not affected by either exclosure strategy, but nitrate nitrogen was the dominant soil factor explaining changes in bacterial communities. Conclusion Our findings show that grazer exclosure increases soil microbial diversity which are effective soil restoration measures for degraded desert steppe, but this effect is weakened under warming conditions. Thus, global climate change should be considered when formulating restoration measures for degraded grasslands.
Collapse
Affiliation(s)
| | | | | | | | | | - Mengli Zhao
- Key Laboratory of Grassland Resources of the Ministry of Education, Key Laboratory of Forage Cultivation, Processing and High Efficient Utilization of the Ministry of Agriculture and Rural Affairs, Inner Mongolia Key Laboratory of Grassland Management and Utilization, College of Grassland, Resources and Environment, Inner Mongolia Agricultural University, Hohhot, China
| |
Collapse
|
3
|
Al-Shammary AAG, Al-Shihmani LSS, Fernández-Gálvez J, Caballero-Calvo A. Optimizing sustainable agriculture: A comprehensive review of agronomic practices and their impacts on soil attributes. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 364:121487. [PMID: 38889650 DOI: 10.1016/j.jenvman.2024.121487] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2024] [Revised: 06/10/2024] [Accepted: 06/12/2024] [Indexed: 06/20/2024]
Abstract
This study explores agronomic management (AM) effects on soil parameters under diverse conditions. Investigating tillage practices (TP), nutrient management (NM), crop rotation (CR), organic matter (OM), irrigation management (IM), and mulching (MS), it aims to reveal impacts on soil productivity, nutrient availability, microbial activity, and overall health. Varied TP affect soil quality through compaction, porosity, and erosion risk. Proper NM is vital for nutrient cycling, preventing imbalances and acidification. CR disrupts pest cycles, reduces weed pressure, and boosts nutrient recycling. OM management enhances soil quality by influencing organic carbon, nutrient availability, pH, fertility, and water retention. Optimizing IM regulates soil water content without inducing waterlogging. MS contributes to OM content, nutrient retention, soil structure, and temperature-moisture regulation, benefiting soil biota, aggregation, soil health and agricultural productivity. The review emphasizes integrated nutrient, CR, and OM management's positive impact on fertility and microbial activity. Different TP and IM variations impact soil health and crop production. Judicious implementation of these practices is essential for sustainable agriculture. This synthesis identifies uncertainties and proposes research directions for optimizing productivity while ensuring environmental sustainability. Ongoing inquiry can guide a balanced approach between yields and resilient soil stewardship for future generations.
Collapse
Affiliation(s)
| | | | - Jesús Fernández-Gálvez
- Department of Regional Geographical Analysis and Physical Geography, University of Granada, 18071, Granada, Spain.
| | - Andrés Caballero-Calvo
- Department of Regional Geographical Analysis and Physical Geography, University of Granada, 18071, Granada, Spain.
| |
Collapse
|
4
|
Wang X, Wang J, Zou Y, Bie Y, Mahmood A, Zhang L, Liao L, Song Z, Liu G, Zhang C. Urea fertilization increased CO 2 and CH 4 emissions by enhancing C-cycling genes in semi-arid grasslands. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 356:120718. [PMID: 38537467 DOI: 10.1016/j.jenvman.2024.120718] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2023] [Revised: 03/10/2024] [Accepted: 03/19/2024] [Indexed: 04/07/2024]
Abstract
Global climate change is predicted to increase exogenous N input into terrestrial ecosystems, leading to significant changes in soil C-cycling. However, it remains largely unknown how these changes affect soil C-cycling, especially in semi-arid grasslands, which are one of the most vulnerable ecosystems. Here, based on a 3-year field study involving N additions (0, 25, 50, and 100 kg ha-1 yr-1 of urea) in a semi-arid grassland on the Loess Plateau, we investigated the impact of urea fertilization on plant characteristics, soil properties, CO2 and CH4 emissions, and microbial C cycling genes. The compositions of genes involved in C cycling, including C fixation, degradation, methanogenesis, and methane oxidation, were determined using metagenomics analysis. We found that N enrichment increased both above- and belowground biomasses and soil organic C content, but this positive effect was weakened when excessive N was input (N100). N enrichment also altered the C-cycling processes by modifying C-cycle-related genes, specifically stimulating the Calvin cycle C-fixation process, which led to an increase in the relative abundance of cbbS, prkB, and cbbL genes. However, it had no significant effect on the Reductive citrate cycle and 3-hydroxypropionate bi-cycle. N enrichment led to higher soil CO2 and CH4 emissions compared to treatments without added N. This increase showed significant correlations with C degradation genes (bglA, per, and lpo), methanogenesis genes (mch, ftr, and mcr), methane oxidation genes (pmoA, pmoB, and pmoC), and the abundance of microbial taxa harboring these genes. Microbial C-cycling genes were primarily influenced by N-induced changes in soil properties. Specifically, reduced soil pH largely explained the alterations in methane metabolism, while elevated available N levels were mainly responsible for the shift in C fixation and C degradation genes. Our results suggest that soil N enrichment enhances microbial C-cycling processes and soil CO2 and CH4 emissions in semi-arid ecosystems, which contributes to more accurate predictions of ecosystem C-cycling under future climate change.
Collapse
Affiliation(s)
- Xiaojun Wang
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Shaanxi, 712100, PR China; Institute of Soil and Water Conservation, Chinese Academy of Science, Shaanxi, 712100, PR China
| | - Jie Wang
- College of Forestry, Guizhou University, Guiyang, 550025, PR China
| | - Yanuo Zou
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Shaanxi, 712100, PR China; Institute of Soil and Water Conservation, Chinese Academy of Science, Shaanxi, 712100, PR China
| | - Yujing Bie
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Shaanxi, 712100, PR China; Institute of Soil and Water Conservation, Chinese Academy of Science, Shaanxi, 712100, PR China
| | - Athar Mahmood
- Department of Agronomy, University of Agriculture Faisalabad, Faisalabad, 38000, Pakistan
| | - Lu Zhang
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Shaanxi, 712100, PR China; Institute of Soil and Water Conservation, Chinese Academy of Science, Shaanxi, 712100, PR China
| | - Lirong Liao
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Shaanxi, 712100, PR China; Institute of Soil and Water Conservation, Chinese Academy of Science, Shaanxi, 712100, PR China
| | - Zilin Song
- College of Natural Resources and Environment, Northwest A&F University, Shaanxi, 712100, PR China
| | - Guobin Liu
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Shaanxi, 712100, PR China; Institute of Soil and Water Conservation, Chinese Academy of Science, Shaanxi, 712100, PR China.
| | - Chao Zhang
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Shaanxi, 712100, PR China; Institute of Soil and Water Conservation, Chinese Academy of Science, Shaanxi, 712100, PR China.
| |
Collapse
|
5
|
Shu X, Ye Q, Huang H, Xia L, Tang H, Liu X, Wu J, Li Y, Zhang Y, Deng L, Liu W. Effects of grazing exclusion on soil microbial diversity and its functionality in grasslands: a meta-analysis. FRONTIERS IN PLANT SCIENCE 2024; 15:1366821. [PMID: 38567132 PMCID: PMC10985342 DOI: 10.3389/fpls.2024.1366821] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/07/2024] [Accepted: 02/28/2024] [Indexed: 04/04/2024]
Abstract
Grazing exclusion (GE) is considered an effective strategy for restoring the degradation of overgrazed grasslands on the global scale. Soil microbial diversity plays a crucial role in supporting multiple ecosystem functions (multifunctionality) in grassland ecosystems. However, the impact of grazing exclusion on soil microbial diversity remains uncertain. Here, we conducted a meta-analysis using a dataset comprising 246 paired observations from 46 peer-reviewed papers to estimate how GE affects microbial diversity and how these effects vary with climatic regions, grassland types, and GE duration ranging from 1 to 64 years. Meanwhile, we explored the relationship between microbial diversity and its functionality under grazing exclusion. Overall, grazing exclusion significantly increased microbial Shannon (1.9%) and microbial richness (4.9%) compared to grazing group. For microbial groups, GE significantly increased fungal richness (8.6%) and bacterial richness (5.3%), but decreased specific microbial richness (-11.9%). The responses of microbial Shannon to GE varied among climatic regions, grassland types, and GE duration. Specifically, GE increased microbial diversity in in arid, semi-arid, and dry sub-humid regions, but decreased it in humid regions. Moreover, GE significantly increased microbial Shannon in semidesert grasslands (5.9%) and alpine grasslands (3.0%), but not in temperate grasslands. Long-term (>20 year) GE had greater effects on microbial diversity (8.0% for Shannon and 6.7% for richness) compared to short-term (<10 year) GE (-0.8% and 2.4%). Furthermore, grazing exclusion significantly increased multifunctionality, and both microbial and plant Shannon positively correlated with multifunctionality. Overall, our findings emphasize the importance of considering climate, GE duration, and grassland type for biodiversity conservation and sustainable grassland ecosystem functions.
Collapse
Affiliation(s)
- Xiangyang Shu
- Key Laboratory of Land Resources Evaluation and Monitoring in Southwest, Ministry of Education, Sichuan Normal University, Chengdu, China
| | - Qinxin Ye
- Institute of Agricultural Bioenvironment and Energy, Chengdu Academy of Agriculture and Forestry Sciences, Chengdu, China
| | - Han Huang
- College of Economics and Management, Xinjiang Agricultural University, Urumqi, China
| | - Longlong Xia
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China
| | - Hao Tang
- Key Laboratory of Land Resources Evaluation and Monitoring in Southwest, Ministry of Education, Sichuan Normal University, Chengdu, China
| | - Xingyi Liu
- Institute of Agricultural Bioenvironment and Energy, Chengdu Academy of Agriculture and Forestry Sciences, Chengdu, China
| | - Jianwei Wu
- Institute of Agricultural Bioenvironment and Energy, Chengdu Academy of Agriculture and Forestry Sciences, Chengdu, China
| | - Yiding Li
- College of Resources, Sichuan Agricultural University, Chengdu, China
| | - Yanyan Zhang
- College of Resources, Sichuan Agricultural University, Chengdu, China
| | - Liangji Deng
- College of Resources, Sichuan Agricultural University, Chengdu, China
| | - Weijia Liu
- Institute of Agricultural Bioenvironment and Energy, Chengdu Academy of Agriculture and Forestry Sciences, Chengdu, China
| |
Collapse
|
6
|
Wang Y, Wang Z, Kang Y, Zhang Z, Bao D, Sun X, Su J. Assessing the win-win situation of forage production and soil organic carbon through a short-term active restoration strategy in alpine grasslands. FRONTIERS IN PLANT SCIENCE 2024; 14:1290808. [PMID: 38273956 PMCID: PMC10808524 DOI: 10.3389/fpls.2023.1290808] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/08/2023] [Accepted: 12/19/2023] [Indexed: 01/27/2024]
Abstract
Introduction Grassland degradation has seriously affected the ecological environment and human livelihood. To abate these, implementing effective management strategies to restore and improve the service functions and productivity of degraded grasslands is crucial. Methods To evaluate the influences of restoration measures combined with different grazing intensities on short-term (1 year) grassland restoration, the changes in soil physicochemical properties, as well as plant traits under restoration measures of different grazing intensities, reseeding, and fertilization, were analyzed. Results Soil organic carbon (SOC) increased to varying degrees, whereas available nutrients decreased under all combined restoration measures. Reseeding, alone and in combination with fertilization, substantially increased SOC, improved grassland vegetation status, and enhanced grassland productivity. The aboveground biomass of Gramineae and the total aboveground biomass increased under the combined restoration measures of transferring livestock out of the pasture 45 days in advance, reseeding, and fertilization (T4). Redundancy analysis revealed a strong correlation between grassland vegetation characteristics, SOC, and available potassium. Considering soil and vegetation factors, the short-term results suggested that the combination measures in T4had the most marked positive impact on grassland restoration. Discussion These findings offer valuable theoretical insights for the ecological restoration of degraded grasslands in alpine regions.
Collapse
Affiliation(s)
- Yan Wang
- College of Grassland Science, Gansu Agricultural University, Lanzhou, China
- Key Laboratory of Grassland Ecosystem, Ministry of Education, Gansu Agricultural University, Lanzhou, China
- Gansu Agricultural University-Massey University Research Centre for Grassland Biodiversity, Gansu Agricultural University, Lanzhou, China
| | - Zhicheng Wang
- College of Grassland Science, Gansu Agricultural University, Lanzhou, China
- Key Laboratory of Grassland Ecosystem, Ministry of Education, Gansu Agricultural University, Lanzhou, China
- Gansu Agricultural University-Massey University Research Centre for Grassland Biodiversity, Gansu Agricultural University, Lanzhou, China
| | - Yukun Kang
- College of Grassland Science, Gansu Agricultural University, Lanzhou, China
- Key Laboratory of Grassland Ecosystem, Ministry of Education, Gansu Agricultural University, Lanzhou, China
- Gansu Agricultural University-Massey University Research Centre for Grassland Biodiversity, Gansu Agricultural University, Lanzhou, China
| | - Zhiming Zhang
- College of Grassland Science, Gansu Agricultural University, Lanzhou, China
- Key Laboratory of Grassland Ecosystem, Ministry of Education, Gansu Agricultural University, Lanzhou, China
- Gansu Agricultural University-Massey University Research Centre for Grassland Biodiversity, Gansu Agricultural University, Lanzhou, China
| | - Duanhong Bao
- College of Grassland Science, Gansu Agricultural University, Lanzhou, China
- Key Laboratory of Grassland Ecosystem, Ministry of Education, Gansu Agricultural University, Lanzhou, China
- Gansu Agricultural University-Massey University Research Centre for Grassland Biodiversity, Gansu Agricultural University, Lanzhou, China
| | - Xiaomei Sun
- Gansu Agricultural University-Massey University Research Centre for Grassland Biodiversity, Gansu Agricultural University, Lanzhou, China
- College of Resource and Environmental Science, Gansu Agricultural University, Lanzhou, China
| | - Junhu Su
- College of Grassland Science, Gansu Agricultural University, Lanzhou, China
- Key Laboratory of Grassland Ecosystem, Ministry of Education, Gansu Agricultural University, Lanzhou, China
- Gansu Agricultural University-Massey University Research Centre for Grassland Biodiversity, Gansu Agricultural University, Lanzhou, China
| |
Collapse
|
7
|
Liang X, Wang H, Wang C, Yao Z, Qiu X, Ju H, Wang J. Disentangling the impact of biogas slurry topdressing as a replacement for chemical fertilizers on soil bacterial and fungal community composition, functional characteristics, and co-occurrence networks. ENVIRONMENTAL RESEARCH 2023; 238:117256. [PMID: 37775013 DOI: 10.1016/j.envres.2023.117256] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2023] [Revised: 09/21/2023] [Accepted: 09/23/2023] [Indexed: 10/01/2023]
Abstract
The application of biogas slurry topdressing with drip irrigation systems can compensate for the limitation of traditional solid organic fertilizer, which can only be applied at the bottom. Based on this, we attempted to define the response of soil bacterial and fungal communities of maize during the tasseling and full maturity stages, by using a no-topdressing control and different ratios of biogas slurry nitrogen in place of chemical fertilizer topdressing. The application of biogas slurry resulted in the emergence of new bacterial phyla led by Synergistota. Compared with pure urea chemical topdressing, the pure biogas slurry topdressing treatment significantly enriched Firmicutes and Basidiomycota communities during the tasseling stage, in addition to affecting the separation of bacterial and fungal α-diversity indices between the tasseling and full maturity stages. Based on the prediction of community composition and function, the changes in bacterial and fungal communities caused by biogas slurry treatment stimulated the ability of microorganisms to decompose refractory organic components, which was conducive to turnover in the soil carbon cycle, and improved multi-element (such as sulfur) cycles; however it may also bring potential risks of heavy metal and pathogenic microbial contamination. Notably, the biogas slurry treatment reduced the correlation and aggregation of bacterial and fungal symbiotic networks, and had a dual effect on ecological randomness. These findings contribute to a deeper comprehension of the alterations occurring in soil microbial communities when substituting chemical fertilizers treated with biogas slurry topdressing, and promote the efficient and sustainable utilization of biogas slurry resources.
Collapse
Affiliation(s)
- Xiaoyang Liang
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Beijing, 100081, China; Western Agricultural Research Center, Chinese Academy of Agricultural Sciences, Changji, Xinjiang, 831100, China; Key Laboratory of Low-carbon Green Agriculture in North China, Ministry of Agriculture and Rural Affairs, Beijing, 100081, China
| | - Haitao Wang
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Beijing, 100081, China; Key Laboratory of Low-carbon Green Agriculture in North China, Ministry of Agriculture and Rural Affairs, Beijing, 100081, China
| | - Chuanjuan Wang
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Beijing, 100081, China; Western Agricultural Research Center, Chinese Academy of Agricultural Sciences, Changji, Xinjiang, 831100, China; Key Laboratory of Low-carbon Green Agriculture in North China, Ministry of Agriculture and Rural Affairs, Beijing, 100081, China
| | - Zonglu Yao
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Beijing, 100081, China; Key Laboratory of Low-carbon Green Agriculture in North China, Ministry of Agriculture and Rural Affairs, Beijing, 100081, China
| | - Xuefeng Qiu
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Beijing, 100081, China; Key Laboratory of Low-carbon Green Agriculture in North China, Ministry of Agriculture and Rural Affairs, Beijing, 100081, China
| | - Hui Ju
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Jiandong Wang
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Beijing, 100081, China; Key Laboratory of Low-carbon Green Agriculture in North China, Ministry of Agriculture and Rural Affairs, Beijing, 100081, China.
| |
Collapse
|
8
|
Zhang X, Feng Q, Cao J, Liu W, Qin Y, Zhu M, Han T. Grazing practices affect soil microbial networks but not diversity and composition in alpine meadows of northeastern Qinghai-Tibetan plateau. ENVIRONMENTAL RESEARCH 2023; 235:116656. [PMID: 37451580 DOI: 10.1016/j.envres.2023.116656] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2023] [Revised: 07/04/2023] [Accepted: 07/11/2023] [Indexed: 07/18/2023]
Abstract
Livestock grazing is the primary practice in alpine meadows and can alter soil microbiomes, which is critical for ecosystem functions and services. Seasonal grazing (SG) and continuous grazing (CG) are two kinds of different grazing practices that dominate alpine meadows on the Qinghai-Tibetan Plateau (QTP), and how they affect soil microbial communities remains in-depth exploration. The present study was conducted to investigate the effects of different grazing practices (i.e., SG and CG) on the diversity, composition, and co-occurrence networks of soil bacteria and fungi in QTP alpine meadows. Soil microbial α- and β-diversity showed no obvious difference between SG and CG grasslands. Grazing practices had little impact on soil microbial composition, except that the relative abundance of Proteobacteria and Ascomycota showed significant difference between SG and CG grasslands. Soil microbial networks were more complex and less stable in SG grasslands than that in CG grasslands, and the bacterial networks were more complex than fungal networks. Soil fungal diversity was more strongly correlated with environmental factors than bacteria, whereas both fungal and bacterial structures were mainly influenced by soil pH, total nitrogen, and ammonium nitrogen. These findings indicate that microbial associations are more sensitive to grazing practices than microbial diversity and composition, and that SG may be a better grazing practice for ecological benefits in alpine meadows.
Collapse
Affiliation(s)
- Xiaofang Zhang
- Key Laboratory of Ecohydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, 730000, China; University of Chinese Academy of Sciences, Beijing, 100049, China.
| | - Qi Feng
- Key Laboratory of Ecohydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, 730000, China.
| | - Jianjun Cao
- College of Geography and Environmental Science, Northwest Normal University, Lanzhou, 730070, China.
| | - Wei Liu
- Key Laboratory of Ecohydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, 730000, China; Qilian Mountains Eco-Environment Research Center in Gansu Province, Lanzhou, 730000, China
| | - Yanyan Qin
- Qilian Mountains Eco-Environment Research Center in Gansu Province, Lanzhou, 730000, China; Key Laboratory of Land Surface Process and Climate Change in Cold and Arid Regions, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, 730000, China
| | - Meng Zhu
- Key Laboratory of Ecohydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, 730000, China
| | - Tuo Han
- Key Laboratory of Ecohydrology of Inland River Basin, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, 730000, China
| |
Collapse
|
9
|
Krivonos DV, Konanov DN, Ilina EN. FunFun: ITS-based functional annotator of fungal communities. Ecol Evol 2023; 13:e9874. [PMID: 36911300 PMCID: PMC9994472 DOI: 10.1002/ece3.9874] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2022] [Revised: 02/05/2023] [Accepted: 02/16/2023] [Indexed: 03/14/2023] Open
Abstract
The study of individual fungi and their communities is of great interest to modern biology because they might be both producers of useful compounds, such as antibiotics and organic acids, and pathogens of various diseases. And certain features associated with the functional capabilities of fungi are determined by differences in gene content. Information about gene content is most often taken from the results of functional annotation of the whole genome. However, in practice, whole genome sequencing of fungi is rarely performed. At the same time, usually sequence amplicons of the ITS region to identify fungal taxonomy. But in the case of amplicon sequencing there is no way to perform a functional annotation. Here, we present FunFun, the instrument that allows to evaluate the gene content of an individual fungus or mycobiome from ITS sequencing data. FunFun algorithm based on a modified K-nearest neighbors algorithm. As input, the program can use ITS1, ITS2, or a full-size ITS cluster (ITS1-5.8S-ITS2). FunFun was realized as a pip-installed command line instrument and validated using a shuffle-split approach. The developed instrument can be very useful in the fungal community comparing and estimating functional capabilities of fungi under study. Also, the program can predict with high accuracy the most variable functions.
Collapse
Affiliation(s)
- Danil V. Krivonos
- Research Institute for Systems Biology and Medicine (RISBM)MoscowRussia
| | - Dmitry N. Konanov
- Research Institute for Systems Biology and Medicine (RISBM)MoscowRussia
| | - Elena N. Ilina
- Research Institute for Systems Biology and Medicine (RISBM)MoscowRussia
| |
Collapse
|