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Ahmad MAB, Lee LC, Mohd Rosdi NAN, Abd Hamid NB, Ishak AA, Sino H. Comparing baseline correction algorithms in discriminating brownish soils from five proximity locations based on UPLC and PLS-DA methods. Forensic Sci Res 2023; 8:313-320. [PMID: 38405627 PMCID: PMC10894064 DOI: 10.1093/fsr/owad045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2022] [Accepted: 09/26/2023] [Indexed: 02/27/2024] Open
Abstract
Soil is commonly collected from an outdoor crime scene, and thus it is helpful in linking a suspect and a victim to a crime scene. The chemical profiles of soils can be acquired via chemical instruments such as Ultra-Performance Liquid Chromatography (UPLC). However, the UPLC chromatogram often interferes with an unstable baseline. In this paper, we compared the performance of five baseline correction (BC) algorithms, i.e. asymmetric least squares (AsLS), fill peak, iterative restricted least squares, median window (MW), and modified polynomial fitting, in discriminating 30 chromatograms of brownish soils by five locations of origin, i.e. PP, HK, KU, BL, and KB. The performances of the preprocessed sub-datasets were first visually inspected through the mean chromatograms and then further explored via scores plots of principal component analysis (PCA). Eventually, the predictive performances of the partial least squares-discriminant analysis (PLS-DA) models estimated from 1 000 pairs of training and testing samples (i.e. prepared via iterative random resampling split at 75:25) were studied to identify the best BC method. Mean raw chromatograms of the 10 soil samples were different from each other, with evident fluctuated baselines. AsLS and MW corrected chromatograms demonstrated the most significant improvement compared with the raw counterpart. Meanwhile, the scores plot of PCA revealed that most of the sub-datasets produced three separate clusters. Then, the sub-datasets were modelled via the PLS-DA technique. MW emerged as the excellent BC method based on the mean prediction accuracy estimated using 1 000 pairs of training and testing samples. In conclusion, MW outperformed the other BC methods in correcting the UPLC data of soil. Key points UPLC data of soil interfere with baseline drifts.BC can improve the quality of the pixel-level UPLC data.MW emerges as the most desired algorithm in improving the quality of UPLC data of soil.
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Affiliation(s)
- Muhamad Adib bin Ahmad
- Forensic Science Program, CODTIS, Faculty of Health Sciences, Universiti Kebangsaan Malaysia, 43600 Bangi, Selangor, Malaysia
| | - Loong Chuen Lee
- Forensic Science Program, CODTIS, Faculty of Health Sciences, Universiti Kebangsaan Malaysia, 43600 Bangi, Selangor, Malaysia
- Institute of IR 4.0, Universiti Kebangsaan Malaysia, 43600 Bangi, Selangor, Malaysia
| | - Nur Ain Najihah Mohd Rosdi
- Forensic Science Program, CODTIS, Faculty of Health Sciences, Universiti Kebangsaan Malaysia, 43600 Bangi, Selangor, Malaysia
| | - Nadirah Binti Abd Hamid
- Forensic Science Program, CODTIS, Faculty of Health Sciences, Universiti Kebangsaan Malaysia, 43600 Bangi, Selangor, Malaysia
| | - Ab Aziz Ishak
- Forensic Science Program, CODTIS, Faculty of Health Sciences, Universiti Kebangsaan Malaysia, 43600 Bangi, Selangor, Malaysia
| | - Hukil Sino
- Forensic Science Program, CODTIS, Faculty of Health Sciences, Universiti Kebangsaan Malaysia, 43600 Bangi, Selangor, Malaysia
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Koulis GA, Tsagkaris AS, Aalizadeh R, Dasenaki ME, Panagopoulou EI, Drivelos S, Halagarda M, Georgiou CA, Proestos C, Thomaidis NS. Honey Phenolic Compound Profiling and Authenticity Assessment Using HRMS Targeted and Untargeted Metabolomics. Molecules 2021; 26:2769. [PMID: 34066694 PMCID: PMC8125859 DOI: 10.3390/molecules26092769] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2021] [Revised: 05/04/2021] [Accepted: 05/06/2021] [Indexed: 11/16/2022] Open
Abstract
Honey consumption is attributed to potentially advantageous effects on human health due to its antioxidant capacity as well as anti-inflammatory and antimicrobial activity, which are mainly related to phenolic compound content. Phenolic compounds are secondary metabolites of plants, and their content in honey is primarily affected by the botanical and geographical origin. In this study, a high-resolution mass spectrometry (HRMS) method was applied to determine the phenolic profile of various honey matrices and investigate authenticity markers. A fruitful sample set was collected, including honey from 10 different botanical sources (n = 51) originating from Greece and Poland. Generic liquid-liquid extraction using ethyl acetate as the extractant was used to apply targeted and non-targeted workflows simultaneously. The method was fully validated according to the Eurachem guidelines, and it demonstrated high accuracy, precision, and sensitivity resulting in the detection of 11 target analytes in the samples. Suspect screening identified 16 bioactive compounds in at least one sample, with abscisic acid isomers being the most abundant in arbutus honey. Importantly, 10 markers related to honey geographical origin were revealed through non-targeted screening and the application of advanced chemometric tools. In conclusion, authenticity markers and discrimination patterns were emerged using targeted and non-targeted workflows, indicating the impact of this study on food authenticity and metabolomic fields.
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Affiliation(s)
- Georgios A. Koulis
- Analytical Chemistry Laboratory, Chemistry Department, National and Kapodistrian University of Athens, Panepistimiopolis Zographou, 15771 Athens, Greece; (G.A.K.); (A.S.T.); (R.A.); (E.I.P.); (N.S.T.)
- Food Chemistry Laboratory, Department of Chemistry, National and Kapodistrian University of Athens, Panepistimiopolis Zographou, 15771 Athens, Greece;
| | - Aristeidis S. Tsagkaris
- Analytical Chemistry Laboratory, Chemistry Department, National and Kapodistrian University of Athens, Panepistimiopolis Zographou, 15771 Athens, Greece; (G.A.K.); (A.S.T.); (R.A.); (E.I.P.); (N.S.T.)
- Department of Food Analysis and Nutrition, Faculty of Food and Biochemical Technology, University of Chemistry and Technology Prague, Technická 5, Prague 6—Dejvice, 16628 Prague, Czech Republic
| | - Reza Aalizadeh
- Analytical Chemistry Laboratory, Chemistry Department, National and Kapodistrian University of Athens, Panepistimiopolis Zographou, 15771 Athens, Greece; (G.A.K.); (A.S.T.); (R.A.); (E.I.P.); (N.S.T.)
| | - Marilena E. Dasenaki
- Analytical Chemistry Laboratory, Chemistry Department, National and Kapodistrian University of Athens, Panepistimiopolis Zographou, 15771 Athens, Greece; (G.A.K.); (A.S.T.); (R.A.); (E.I.P.); (N.S.T.)
- Food Chemistry Laboratory, Department of Chemistry, National and Kapodistrian University of Athens, Panepistimiopolis Zographou, 15771 Athens, Greece;
| | - Eleni I. Panagopoulou
- Analytical Chemistry Laboratory, Chemistry Department, National and Kapodistrian University of Athens, Panepistimiopolis Zographou, 15771 Athens, Greece; (G.A.K.); (A.S.T.); (R.A.); (E.I.P.); (N.S.T.)
| | - Spyros Drivelos
- Chemistry Laboratory, Department of Food Science and Human Nutrition, Agricultural University of Athens, 75 Iera Odos, 11855 Athens, Greece; (S.D.); (C.A.G.)
| | - Michał Halagarda
- Department of Food Product Quality, Cracow University of Economics, ul. Sienkiewicza 5, 30033 Krakow, Poland;
| | - Constantinos A. Georgiou
- Chemistry Laboratory, Department of Food Science and Human Nutrition, Agricultural University of Athens, 75 Iera Odos, 11855 Athens, Greece; (S.D.); (C.A.G.)
| | - Charalampos Proestos
- Food Chemistry Laboratory, Department of Chemistry, National and Kapodistrian University of Athens, Panepistimiopolis Zographou, 15771 Athens, Greece;
| | - Nikolaos S. Thomaidis
- Analytical Chemistry Laboratory, Chemistry Department, National and Kapodistrian University of Athens, Panepistimiopolis Zographou, 15771 Athens, Greece; (G.A.K.); (A.S.T.); (R.A.); (E.I.P.); (N.S.T.)
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Jiménez-Carvelo AM, González-Casado A, Bagur-González MG, Cuadros-Rodríguez L. Alternative data mining/machine learning methods for the analytical evaluation of food quality and authenticity - A review. Food Res Int 2019; 122:25-39. [PMID: 31229078 DOI: 10.1016/j.foodres.2019.03.063] [Citation(s) in RCA: 123] [Impact Index Per Article: 24.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2019] [Revised: 03/25/2019] [Accepted: 03/26/2019] [Indexed: 12/31/2022]
Abstract
In recent years, the variety and volume of data acquired by modern analytical instruments in order to conduct a better authentication of food has dramatically increased. Several pattern recognition tools have been developed to deal with the large volume and complexity of available trial data. The most widely used methods are principal component analysis (PCA), partial least squares-discriminant analysis (PLS-DA), soft independent modelling by class analogy (SIMCA), k-nearest neighbours (kNN), parallel factor analysis (PARAFAC), and multivariate curve resolution-alternating least squares (MCR-ALS). Nevertheless, there are alternative data treatment methods, such as support vector machine (SVM), classification and regression tree (CART) and random forest (RF), that show a great potential and more advantages compared to conventional ones. In this paper, we explain the background of these methods and review and discuss the reported studies in which these three methods have been applied in the area of food quality and authenticity. In addition, we clarify the technical terminology used in this particular area of research.
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Affiliation(s)
- Ana M Jiménez-Carvelo
- Department of Analytical Chemistry, Faculty of Science, University of Granada, C/ Fuentenueva s/n, E-18071 Granada, Spain.
| | - Antonio González-Casado
- Department of Analytical Chemistry, Faculty of Science, University of Granada, C/ Fuentenueva s/n, E-18071 Granada, Spain
| | - M Gracia Bagur-González
- Department of Analytical Chemistry, Faculty of Science, University of Granada, C/ Fuentenueva s/n, E-18071 Granada, Spain
| | - Luis Cuadros-Rodríguez
- Department of Analytical Chemistry, Faculty of Science, University of Granada, C/ Fuentenueva s/n, E-18071 Granada, Spain
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Use of principal component analysis (PCA) and hierarchical cluster analysis (HCA) for multivariate association between bioactive compounds and functional properties in foods: A critical perspective. Trends Food Sci Technol 2018. [DOI: 10.1016/j.tifs.2017.12.006] [Citation(s) in RCA: 399] [Impact Index Per Article: 66.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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