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Raajaraman BR, Sheela NR, Muthu S. Spectroscopic, quantum computational and molecular docking studies on 1-phenylcyclopentane carboxylic acid. Comput Biol Chem 2019; 82:44-56. [PMID: 31260880 DOI: 10.1016/j.compbiolchem.2019.05.011] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2018] [Revised: 04/18/2019] [Accepted: 05/27/2019] [Indexed: 12/20/2022]
Abstract
The vibrational wavenumbers of optimized molecular structure of 1-phenylcyclopentane carboxylic acid (1PCPCA) molecule have been calculated by quantum chemical theory and compared with experimental results. The density functional theory (DFT) approach is followed using the method B3LYP and 6-311++G(d,p) basis set. Using potential energy distribution, all the assignments of the basic vibrational modes were calculated. Natural bond orbital (NBO) and atoms in molecules (AIM) topological studies applied to get the intermolecular interactions of the compound. 1H and 13C chemical shift of NMR was estimated on the molecule and also compared with the experimental spectra. In order to find the band gap, the time-dependent (TD-DFT) method is used to get the higher order energy levels properties and also compared with experimental data of UV-vis spectrum. From the analysis of various spectroscopic studies, there is a good relationship between the experimental and theoretical values obtained. Quantum characters, bio-active nature and reactive areas of the molecule are revealed by Fukui function, molecular electrostatic potential (MEP) and Hirshfeld surface studies. The human enzyme steroidogenic types and their protein targets were tested with this molecule by molecular docking.
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Affiliation(s)
- B R Raajaraman
- Department of Applied Physics, Sri Venkateswara College of Engineering, Sriperumbudur, 602 117, Tamil Nadu, India
| | - N R Sheela
- Department of Applied Physics, Sri Venkateswara College of Engineering, Sriperumbudur, 602 117, Tamil Nadu, India
| | - S Muthu
- Department of Physics, Arignar Anna Govt. Arts College, Cheyyar, 604 407, Tamil Nadu, India.
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Yang X, Cao ZH, Zhou Y, Cheng F, Lin ZW, Ou Z, Yuan Y, Huang YY. Petasis-Type gem-Difluoroallylation Reactions Assisted by the Neighboring Hydroxyl Group in Amines. Org Lett 2018; 20:2585-2589. [DOI: 10.1021/acs.orglett.8b00721] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Xing Yang
- Department of Chemistry, School of Chemistry, Chemical Engineering and Life Science, Wuhan University of Technology, Wuhan 430070, P.R. China
| | - Ze-Hun Cao
- Department of Chemistry, School of Chemistry, Chemical Engineering and Life Science, Wuhan University of Technology, Wuhan 430070, P.R. China
| | - Yang Zhou
- Department of Chemistry, School of Chemistry, Chemical Engineering and Life Science, Wuhan University of Technology, Wuhan 430070, P.R. China
| | - Feng Cheng
- Department of Chemistry, School of Chemistry, Chemical Engineering and Life Science, Wuhan University of Technology, Wuhan 430070, P.R. China
| | - Zi-Wei Lin
- Department of Chemistry, School of Chemistry, Chemical Engineering and Life Science, Wuhan University of Technology, Wuhan 430070, P.R. China
| | - Zhi Ou
- Department of Chemistry, School of Chemistry, Chemical Engineering and Life Science, Wuhan University of Technology, Wuhan 430070, P.R. China
| | - Ye Yuan
- Department of Chemistry, School of Chemistry, Chemical Engineering and Life Science, Wuhan University of Technology, Wuhan 430070, P.R. China
| | - Yi-Yong Huang
- Department of Chemistry, School of Chemistry, Chemical Engineering and Life Science, Wuhan University of Technology, Wuhan 430070, P.R. China
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Sanz-Vidal Á, Miró J, Sánchez-Roselló M, del Pozo C, Fustero S. Gold-Catalyzed Povarov-Type Reaction of Fluorinated Imino Esters and Furans. J Org Chem 2016; 81:6515-24. [DOI: 10.1021/acs.joc.6b01139] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Affiliation(s)
- Álvaro Sanz-Vidal
- Departamento
de Química Orgánica, Universidad de Valencia, 46100 Burjassot, Spain
| | - Javier Miró
- Departamento
de Química Orgánica, Universidad de Valencia, 46100 Burjassot, Spain
| | | | - Carlos del Pozo
- Departamento
de Química Orgánica, Universidad de Valencia, 46100 Burjassot, Spain
| | - Santos Fustero
- Departamento
de Química Orgánica, Universidad de Valencia, 46100 Burjassot, Spain
- Laboratorio
de Moléculas Orgánicas, Centro de Investigación Príncipe Felipe, 46012 Valencia, Spain
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Fustero S, Simón-Fuentes A, Barrio P, Haufe G. Olefin Metathesis Reactions with Fluorinated Substrates, Catalysts, and Solvents. Chem Rev 2014; 115:871-930. [DOI: 10.1021/cr500182a] [Citation(s) in RCA: 142] [Impact Index Per Article: 14.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Santos Fustero
- Departamento
de Química Orgánica, Universidad de Valencia, E-46100 Burjassot, Spain
- Laboratorio
de Moléculas Orgánicas, Centro de Investigación Príncipe Felipe, E-46012 Valencia, Spain
| | | | - Pablo Barrio
- Departamento
de Química Orgánica, Universidad de Valencia, E-46100 Burjassot, Spain
| | - Günter Haufe
- Organisch-Chemisches
Institut, Westfälische Wilhelms-Universität, Corrensstrasse 40, D-48149 Münster, Germany
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Fustero S, Rodrigo V, Sánchez‐Roselló M, del Pozo C, Timoneda J, Frizler M, Sisay MT, Bajorath J, Calle LP, Cañada FJ, Jiménez‐Barbero J, Gütschow M. New Cathepsin Inhibitors to Explore the Fluorophilic Properties of the S
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Pocket of Cathepsin B: Design, Synthesis, and Biological Evaluation. Chemistry 2011; 17:5256-60. [DOI: 10.1002/chem.201100113] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2011] [Indexed: 11/07/2022]
Affiliation(s)
- Santos Fustero
- Departamento de Química Orgánica, Universidad de Valencia, 46100 Burjassot (Spain), Fax: (+34) 963‐544‐939
- Laboratorio de Moléculas Orgánicas, Centro de Investigación Príncipe Felipe, 46012 Valencia (Spain)
| | - Vanessa Rodrigo
- Laboratorio de Moléculas Orgánicas, Centro de Investigación Príncipe Felipe, 46012 Valencia (Spain)
| | - María Sánchez‐Roselló
- Laboratorio de Moléculas Orgánicas, Centro de Investigación Príncipe Felipe, 46012 Valencia (Spain)
| | - Carlos del Pozo
- Departamento de Química Orgánica, Universidad de Valencia, 46100 Burjassot (Spain), Fax: (+34) 963‐544‐939
| | - Joaquín Timoneda
- Departamento de Bioquímica y Biología Molecular, Universidad de Valencia, 46100 Burjassot (Spain)
| | - Maxim Frizler
- Pharmaceutical Institute, Pharmaceutical Chemistry I, University of Bonn, 53121 Bonn (Germany), Fax: (+49) 228‐732567
- NRW International Graduate Research School Biotech‐Pharma, 53105 Bonn (Germany)
| | - Mihiret T. Sisay
- Pharmaceutical Institute, Pharmaceutical Chemistry I, University of Bonn, 53121 Bonn (Germany), Fax: (+49) 228‐732567
- Department of Life Science Informatics, B‐IT, University of Bonn, 53113 Bonn (Germany)
| | - Jürgen Bajorath
- Department of Life Science Informatics, B‐IT, University of Bonn, 53113 Bonn (Germany)
| | - Luis P. Calle
- Chemical and Physical Biology, Centro de Investigaciones Biológicas, CSIC, 28040 Madrid (Spain), Fax: (+34) 915‐360‐432
| | - F. Javier Cañada
- Chemical and Physical Biology, Centro de Investigaciones Biológicas, CSIC, 28040 Madrid (Spain), Fax: (+34) 915‐360‐432
| | - Jesús Jiménez‐Barbero
- Chemical and Physical Biology, Centro de Investigaciones Biológicas, CSIC, 28040 Madrid (Spain), Fax: (+34) 915‐360‐432
| | - Michael Gütschow
- Pharmaceutical Institute, Pharmaceutical Chemistry I, University of Bonn, 53121 Bonn (Germany), Fax: (+49) 228‐732567
- NRW International Graduate Research School Biotech‐Pharma, 53105 Bonn (Germany)
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Fustero S, Sánchez-Roselló M, Báez C, del Pozo C, García Ruano JL, Alemán J, Marzo L, Parra A. Asymmetric synthesis of quaternary α-amino acid derivatives and their fluorinated analogues. Amino Acids 2011; 41:559-73. [DOI: 10.1007/s00726-011-0881-7] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2011] [Accepted: 03/04/2011] [Indexed: 10/18/2022]
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Synthetic and Biological Applications of Fluorous Reagents as Phase Tags. Top Curr Chem (Cham) 2011; 308:45-67. [DOI: 10.1007/128_2011_263] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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Fustero S, Mateu N, Simón-Fuentes A, Aceña JL. Diastereoselective Intramolecular Additions of Allyl- and Propargylsilanes to Iminium Ions: Synthesis of Cyclic and Bicyclic Quaternary Amino Acids. Org Lett 2010; 12:3014-7. [DOI: 10.1021/ol1010246] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Santos Fustero
- Departamento de Química Orgánica, Universidad de Valencia, E-46100 Burjassot, Spain, and Laboratorio de Moléculas Orgánicas, Centro de Investigación Príncipe Felipe, E-46012 Valencia, Spain
| | - Natalia Mateu
- Departamento de Química Orgánica, Universidad de Valencia, E-46100 Burjassot, Spain, and Laboratorio de Moléculas Orgánicas, Centro de Investigación Príncipe Felipe, E-46012 Valencia, Spain
| | - Antonio Simón-Fuentes
- Departamento de Química Orgánica, Universidad de Valencia, E-46100 Burjassot, Spain, and Laboratorio de Moléculas Orgánicas, Centro de Investigación Príncipe Felipe, E-46012 Valencia, Spain
| | - José Luis Aceña
- Departamento de Química Orgánica, Universidad de Valencia, E-46100 Burjassot, Spain, and Laboratorio de Moléculas Orgánicas, Centro de Investigación Príncipe Felipe, E-46012 Valencia, Spain
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The chemistry of the carbon-transition metal double and triple bond: Annual survey covering the year 2008. Coord Chem Rev 2010. [DOI: 10.1016/j.ccr.2009.07.018] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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Min QQ, He CY, Zhou H, Zhang X. Highly diastereoselective synthesis of quaternary α-trifluoromethyl α-amino acids from chiral imines of trifluoropyruvate. Chem Commun (Camb) 2010; 46:8029-31. [DOI: 10.1039/c0cc02408b] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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